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(-) Description

Title :  X-RAY STRUCTURE OF YB61_HAEIN NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET IR63
 
Authors :  A. P. Kuzin, I. Lee, Y. Chiang, T. B. Acton, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date :  11 Feb 04  (Deposition) - 30 Mar 04  (Release) - 31 Mar 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Structural Genomics, Unknown Function, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. P. Kuzin, I. Lee, Y. Chiang, T. B. Acton, G. T. Montelione, J. F. Hunt, L. Tong
X-Ray Structure Of Yb61_haein Northeast Structural Genomics Consortium Target Ir63.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN HI1161
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PIR63-21-1
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PET21D
    Gene: HI1161
    Organism Scientific: HAEMOPHILUS INFLUENZAE
    Organism Taxid: 727

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1SC0)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1SC0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1SC0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1SC0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1SC0)

(-) Exons   (0, 0)

(no "Exon" information available for 1SC0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:137
 aligned with Y1161_HAEIN | P45083 from UniProtKB/Swiss-Prot  Length:138

    Alignment length:137
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       
          Y1161_HAEIN     2 LWKKTFTLENLNQLCSNSAVSHLGIEISAFGEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLCLEEGKTVVGLDINANHLRPVRSGKVTARATPINLGRNIQVWQIDIRTEENKLCCVSRLTLSVINL 138
               SCOP domains d1sc0a_ A: Hypothetical protein HI1161                                                                                                    SCOP domains
               CATH domains 1sc0A00 A:2-138  [code=3.10.129.10, no name defined]                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhh..hhhhhh..eeeee....eeeeee............hhhhhhhhhhhhhhhhhhhh.....eeeeeeeeeee.......eeeeeeeeeee...eeeeeeeee.....eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sc0 A   2 LWKKTFTLENLNQLCSNSAVSHLGIEISAFGEDWIEATmPVDHRTmQPFGVLHGGVSVALAETIGSLAGSLCLEEGKTVVGLDINANHLRPVRSGKVTARATPINLGRNIQVWQIDIRTEENKLCCVSRLTLSVINL 138
                                    11        21        31        41     |  51        61        71        81        91       101       111       121       131       
                                                                 40-MSE 47-MSE                                                                                       


Chain B from PDB  Type:PROTEIN  Length:137
 aligned with Y1161_HAEIN | P45083 from UniProtKB/Swiss-Prot  Length:138

    Alignment length:137
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       
          Y1161_HAEIN     2 LWKKTFTLENLNQLCSNSAVSHLGIEISAFGEDWIEATMPVDHRTMQPFGVLHGGVSVALAETIGSLAGSLCLEEGKTVVGLDINANHLRPVRSGKVTARATPINLGRNIQVWQIDIRTEENKLCCVSRLTLSVINL 138
               SCOP domains d1sc0b_ B: Hypothetical protein HI1161                                                                                                    SCOP domains
               CATH domains 1sc0B00 B:2-138  [code=3.10.129.10, no name defined]                                                                                      CATH domains
           Pfam domains (1) ------------------------------------------------4HBT-1sc0B01 B:50-127                                                         ----------- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------4HBT-1sc0B02 B:50-127                                                         ----------- Pfam domains (2)
         Sec.struct. author ......hhhhhhhhh..hhhhhh..eeeee....eeeeee............hhhhhhhhhhhhhhhhhhh......eeeeeeeeeee.......eeeeeeeeeee...eeeeeeeee.....eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sc0 B   2 LWKKTFTLENLNQLCSNSAVSHLGIEISAFGEDWIEATmPVDHRTmQPFGVLHGGVSVALAETIGSLAGSLCLEEGKTVVGLDINANHLRPVRSGKVTARATPINLGRNIQVWQIDIRTEENKLCCVSRLTLSVINL 138
                                    11        21        31        41     |  51        61        71        81        91       101       111       121       131       
                                                                 40-MSE 47-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: HotDog (52)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Y1161_HAEIN | P45083)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Y1161_HAEIN | P45083: 2b6e 3lz7

(-) Related Entries Specified in the PDB File

1o0i THE SAME PROTEIN MODEL WITH POOR GEOMETRY.
ir63