1S5U - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN EC709 FROM ESCHERICHIA COLI

Authors :   Y. Kim, A. Joachimiak, T. Skarina, A. Savchenko, A. Edwards, Midwest Center For Structural Genomics (Mcsg)

Date :   21 Jan 04 (Deposition) - 11 May 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: E,F,G,H  (1x)
Biol. Unit 3: A (1x),B (1x),C (1x),D (1x),E (1x),F (1x),G (1x),H (1x)
Biol. Unit 4: A,B,C,D,E,F,G,H  (1x)
Biol. Unit 5: A (1x),B (1x),C (1x),D (1x),E (1x),F (1x),G (1x),H (1x)

Keywords :   Structural Genomics, Hypothetical Protein, Thioesterase Fold, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Kim, A. Joachimiak, T. Skarina, A. Savchenko, A. Edwards
Crystal Structure Of Hypothetical Protein Ec709 From Escherichia Coli
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - PROTEIN YBGC
	Chains	:	A, B, C, D, E, F, G, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Strain	:	BL21DE3
	Expression System Taxid	:	469008
	Gene	:	YBGC, B0736, C0815, Z0904, ECS0771, SF0561, S0574
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Synonym	:	HYPOTHETICAL PROTEIN EC709

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:					E	F	G	H
Biological Unit 3 (1x)	:	A (1x)	B (1x)	C (1x)	D (1x)	E (1x)	F (1x)	G (1x)	H (1x)
Biological Unit 4 (1x)	:	A	B	C	D	E	F	G	H
Biological Unit 5 (1x)	:	A (1x)	B (1x)	C (1x)	D (1x)	E (1x)	F (1x)	G (1x)	H (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 17)

No.	Name	Count	Type	Full Name
1	EDO	5	Ligand/Ion	1,2-ETHANEDIOL
2	SO4	12	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 8)

No.	Name	Count	Type	Full Name
1	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
2	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 9)

No.	Name	Count	Type	Full Name
1	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
2	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 3 (2, 8)

No.	Name	Count	Type	Full Name
1	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
2	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 4 (2, 17)

No.	Name	Count	Type	Full Name
1	EDO	5	Ligand/Ion	1,2-ETHANEDIOL
2	SO4	12	Ligand/Ion	SULFATE ION

Biological Unit 5 (2, 8)

No.	Name	Count	Type	Full Name
1	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
2	SO4	6	Ligand/Ion	SULFATE ION

Asymmetric Unit (17, 17)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:7 , HOH A:924 , HIS E:42	BINDING SITE FOR RESIDUE SO4 A 801
02	AC2	SOFTWARE	ARG B:7 , HOH B:834 , HOH B:869 , HIS F:42	BINDING SITE FOR RESIDUE SO4 B 802
03	AC3	SOFTWARE	ARG D:7	BINDING SITE FOR RESIDUE SO4 D 803
04	AC4	SOFTWARE	HIS C:42 , ARG G:7 , HOH G:821 , HOH G:850 , HOH G:857	BINDING SITE FOR RESIDUE SO4 G 804
05	AC5	SOFTWARE	HIS D:42 , ARG H:7 , HOH H:917 , HOH H:963 , HOH H:969 , HOH H:974	BINDING SITE FOR RESIDUE SO4 H 805
06	AC6	SOFTWARE	ARG E:122 , PRO E:125 , LYS E:126	BINDING SITE FOR RESIDUE SO4 E 806
07	AC7	SOFTWARE	PRO D:125 , LYS D:126 , HOH D:840 , HOH D:881 , ARG F:86 , GLY F:87	BINDING SITE FOR RESIDUE SO4 F 807
08	AC8	SOFTWARE	ARG F:122 , PRO F:125 , LYS F:126 , HOH F:977	BINDING SITE FOR RESIDUE SO4 F 808
09	AC9	SOFTWARE	ARG H:122 , PRO H:125 , LYS H:126 , HOH H:997	BINDING SITE FOR RESIDUE SO4 H 809
10	BC1	SOFTWARE	SER C:84 , MET C:85 , PHE C:132 , LYS C:133 , EDO C:905 , HOH C:906 , HOH C:958	BINDING SITE FOR RESIDUE SO4 C 810
11	BC2	SOFTWARE	ILE B:82 , THR B:83 , SER B:84 , MET B:85 , HOH B:861	BINDING SITE FOR RESIDUE SO4 B 811
12	BC3	SOFTWARE	SER C:84 , MET C:85 , ARG C:86 , HOH C:962 , HOH C:968	BINDING SITE FOR RESIDUE SO4 C 812
13	BC4	SOFTWARE	ARG B:41 , SER B:46 , ARG C:11 , ARG H:54 , HOH H:955	BINDING SITE FOR RESIDUE EDO H 901
14	BC5	SOFTWARE	ARG E:11 , ARG H:41 , HOH H:905	BINDING SITE FOR RESIDUE EDO E 902
15	BC6	SOFTWARE	ARG F:11 , ARG G:41 , SER G:46	BINDING SITE FOR RESIDUE EDO F 903
16	BC7	SOFTWARE	ARG A:122 , ALA A:123 , HOH A:957 , ARG B:54	BINDING SITE FOR RESIDUE EDO A 904
17	BC8	SOFTWARE	MET C:85 , VAL C:129 , SO4 C:810 , HOH C:958 , LYS E:120	BINDING SITE FOR RESIDUE EDO C 905

(no "SS Bond" information available for 1S5U)

Asymmetric Unit

No.	Residues
1	Lys E:133	-	Gln E:134

(no "SAP(SNP)/Variant" information available for 1S5U)

Asymmetric Unit (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	4HBCOA_THIOESTERASE	PS01328	4-hydroxybenzoyl-CoA thioesterase family active site.	YBGC_ECOLI	11-28	8	A:11-28 B:11-28 C:11-28 D:11-28 E:11-28 F:11-28 G:11-28 H:11-28

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	4HBCOA_THIOESTERASE	PS01328	4-hydroxybenzoyl-CoA thioesterase family active site.	YBGC_ECOLI	11-28	4	A:11-28 B:11-28 C:11-28 D:11-28 - - - -

Biological Unit 2 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	4HBCOA_THIOESTERASE	PS01328	4-hydroxybenzoyl-CoA thioesterase family active site.	YBGC_ECOLI	11-28	4	- - - - E:11-28 F:11-28 G:11-28 H:11-28

Biological Unit 3 (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	4HBCOA_THIOESTERASE	PS01328	4-hydroxybenzoyl-CoA thioesterase family active site.	YBGC_ECOLI	11-28	8	A:11-28 B:11-28 C:11-28 D:11-28 E:11-28 F:11-28 G:11-28 H:11-28

Biological Unit 4 (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	4HBCOA_THIOESTERASE	PS01328	4-hydroxybenzoyl-CoA thioesterase family active site.	YBGC_ECOLI	11-28	8	A:11-28 B:11-28 C:11-28 D:11-28 E:11-28 F:11-28 G:11-28 H:11-28

Biological Unit 5 (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	4HBCOA_THIOESTERASE	PS01328	4-hydroxybenzoyl-CoA thioesterase family active site.	YBGC_ECOLI	11-28	8	A:11-28 B:11-28 C:11-28 D:11-28 E:11-28 F:11-28 G:11-28 H:11-28

(no "Exon" information available for 1S5U)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:129
 aligned with YBGC_ECOLI | P0A8Z3 from UniProtKB/Swiss-Prot  Length:134

    Alignment length:129
                                    13        23        33        43        53        63        73        83        93       103       113       123         
           YBGC_ECOLI     4 TLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEF 132
               SCOP domains d1s5ua_ A: Hypothetical protein YbgC                                                                                              SCOP domains
               CATH domains 1s5uA00 A:4-132  [code=3.10.129.10, no name defined]                                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhh..eeeeeeeeeee........eeeeeeeeeee...eeeeeeeee.....eeeeeeeeeeeee....ee...hhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------4HBCOA_THIOESTERAS-------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s5u A   4 TLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEF 132
                                    13        23        33        43        53        63        73        83        93       103       113       123

Chain B from PDB  Type:PROTEIN  Length:128
 aligned with YBGC_ECOLI | P0A8Z3 from UniProtKB/Swiss-Prot  Length:134

    Alignment length:128
                                    14        24        34        44        54        64        74        84        94       104       114       124        
           YBGC_ECOLI     5 LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEF 132
               SCOP domains d1s5ub_ B: Hypothetical protein YbgC                                                                                             SCOP domains
               CATH domains 1s5uB00 B:5-132  [code=3.10.129.10, no name defined]                                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhh..eeeeeeeeeee........eeeeeeeeeeee..eeeeeeeee.....eeeeeeeeeeee..........hhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------4HBCOA_THIOESTERAS-------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s5u B   5 LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEF 132
                                    14        24        34        44        54        64        74        84        94       104       114       124

Chain C from PDB  Type:PROTEIN  Length:130
 aligned with YBGC_ECOLI | P0A8Z3 from UniProtKB/Swiss-Prot  Length:134

    Alignment length:130
                                    13        23        33        43        53        63        73        83        93       103       113       123       133
           YBGC_ECOLI     4 TLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEFK 133
               SCOP domains d1s5uc_ C: Hypothetical protein YbgC                                                                                               SCOP domains
               CATH domains 1s5uC00 C:4-133  [code=3.10.129.10, no name defined]                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhh..eeeeeeeeeee........eeeeeeeeeeee..eeeeeeeee.....eeeeeeeeeeee..........hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------4HBCOA_THIOESTERAS--------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s5u C   4 TLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEFK 133
                                    13        23        33        43        53        63        73        83        93       103       113       123       133

Chain D from PDB  Type:PROTEIN  Length:129
 aligned with YBGC_ECOLI | P0A8Z3 from UniProtKB/Swiss-Prot  Length:134

    Alignment length:129
                                    13        23        33        43        53        63        73        83        93       103       113       123         
           YBGC_ECOLI     4 TLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEF 132
               SCOP domains d1s5ud_ D: Hypothetical protein YbgC                                                                                              SCOP domains
               CATH domains 1s5uD00 D:4-132  [code=3.10.129.10, no name defined]                                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhh..eeeeeeeeeee........eeeeeeeeeee...eeeeeeeee.....eeeeeeeeeeee..........hhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------4HBCOA_THIOESTERAS-------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s5u D   4 TLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEF 132
                                    13        23        33        43        53        63        73        83        93       103       113       123

Chain E from PDB  Type:PROTEIN  Length:136
 aligned with YBGC_ECOLI | P0A8Z3 from UniProtKB/Swiss-Prot  Length:134

    Alignment length:136
                              1                                                                                                                                     
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128      
           YBGC_ECOLI     - --MNTTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEFKQ 134
               SCOP domains d1s5ue_ E: Hypothetical protein YbgC                                                                                                     SCOP domains
               CATH domains 1s5uE00 E:-1-134  [code=3.10.129.10, no name defined]                                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhh..eeeeeeeeeee........eeeeeeeeeee...eeeeeeeee.....eeeeeeeeeeee..........hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------4HBCOA_THIOESTERAS---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s5u E  -1 GHMNTTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEFKQ 134
                                     8        18        28        38        48        58        68        78        88        98       108       118       128

Chain F from PDB  Type:PROTEIN  Length:130
 aligned with YBGC_ECOLI | P0A8Z3 from UniProtKB/Swiss-Prot  Length:134

    Alignment length:130
                                    13        23        33        43        53        63        73        83        93       103       113       123       133
           YBGC_ECOLI     4 TLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEFK 133
               SCOP domains d1s5uf_ F: Hypothetical protein YbgC                                                                                               SCOP domains
               CATH domains 1s5uF00 F:4-133  [code=3.10.129.10, no name defined]                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhh..eeeeeeeeeee........eeeeeeeeeee...eeeeeeeee.....eeeeeeeeeeeee....ee...hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------4HBCOA_THIOESTERAS--------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s5u F   4 TLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEFK 133
                                    13        23        33        43        53        63        73        83        93       103       113       123       133

Chain G from PDB  Type:PROTEIN  Length:130
 aligned with YBGC_ECOLI | P0A8Z3 from UniProtKB/Swiss-Prot  Length:134

    Alignment length:130
                                    12        22        32        42        52        62        72        82        92       102       112       122       132
           YBGC_ECOLI     3 TTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEF 132
               SCOP domains d1s5ug_ G: Hypothetical protein YbgC                                                                                               SCOP domains
               CATH domains 1s5uG00 G:3-132  [code=3.10.129.10, no name defined]                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhh..eeeeeeeeeee........eeeeeeeeeee...eeeeeeeee.....eeeeeeeeeeee..........hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------4HBCOA_THIOESTERAS-------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s5u G   3 TTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEF 132
                                    12        22        32        42        52        62        72        82        92       102       112       122       132

Chain H from PDB  Type:PROTEIN  Length:130
 aligned with YBGC_ECOLI | P0A8Z3 from UniProtKB/Swiss-Prot  Length:134

    Alignment length:130
                                    12        22        32        42        52        62        72        82        92       102       112       122       132
           YBGC_ECOLI     3 TTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEF 132
               SCOP domains d1s5uh_ H: Hypothetical protein YbgC                                                                                               SCOP domains
               CATH domains 1s5uH00 H:3-132  [code=3.10.129.10, no name defined]                                                                               CATH domains
           Pfam domains (1) -----------------4HBT-1s5uH01 H:20-105                                                                 --------------------------- Pfam domains (1)
           Pfam domains (2) -----------------4HBT-1s5uH02 H:20-105                                                                 --------------------------- Pfam domains (2)
           Pfam domains (3) -----------------4HBT-1s5uH03 H:20-105                                                                 --------------------------- Pfam domains (3)
           Pfam domains (4) -----------------4HBT-1s5uH04 H:20-105                                                                 --------------------------- Pfam domains (4)
           Pfam domains (5) -----------------4HBT-1s5uH05 H:20-105                                                                 --------------------------- Pfam domains (5)
           Pfam domains (6) -----------------4HBT-1s5uH06 H:20-105                                                                 --------------------------- Pfam domains (6)
           Pfam domains (7) -----------------4HBT-1s5uH07 H:20-105                                                                 --------------------------- Pfam domains (7)
           Pfam domains (8) -----------------4HBT-1s5uH08 H:20-105                                                                 --------------------------- Pfam domains (8)
         Sec.struct. author ...eeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhh..eeeeeeeeeee........eeeeeeeeeee...eeeeeeeee.....eeeeeeeeeeee..........hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------4HBCOA_THIOESTERAS-------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s5u H   3 TTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEF 132
                                    12        22        32        42        52        62        72        82        92       102       112       122       132

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Thioesterase/thiol ester dehydrase-isomerase (151)

Superfamily: Thioesterase/thiol ester dehydrase-isomerase (151)

Family: 4HBT-like (28)

Protein domain: Hypothetical protein YbgC (1)

Escherichia coli [TaxId: 562] (1)

1a	d1s5ua_	A:
1b	d1s5ub_	B:
1c	d1s5uc_	C:
1d	d1s5ud_	D:
1e	d1s5ue_	E:
1f	d1s5uf_	F:
1g	d1s5ug_	G:
1h	d1s5uh_	H:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Roll (3276)

Topology: Thiol Ester Dehydrase; Chain A (90)

Homologous Superfamily: [code=3.10.129.10, no name defined] (90)

Escherichia coli. Organism_taxid: 562. (8)

1a	1s5uE00	E:-1-134
1b	1s5uC00	C:4-133
1c	1s5uF00	F:4-133
1d	1s5uG00	G:3-132
1e	1s5uH00	H:3-132
1f	1s5uA00	A:4-132
1g	1s5uD00	D:4-132
1h	1s5uB00	B:5-132

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: HotDog (52)

Family: 4HBT (31)

Escherichia coli (strain K12) (2)

1a	4HBT-1s5uH01	H:20-105
1b	4HBT-1s5uH02	H:20-105
1c	4HBT-1s5uH03	H:20-105
1d	4HBT-1s5uH04	H:20-105
1e	4HBT-1s5uH05	H:20-105
1f	4HBT-1s5uH06	H:20-105
1g	4HBT-1s5uH07	H:20-105
1h	4HBT-1s5uH08	H:20-105

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H (YBGC_ECOLI | P0A8Z3)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0016790	thiolester hydrolase activity	Catalysis of the reaction: RCO-SR' + H2O = RCOOH + HSR'. This reaction is the hydrolysis of a thiolester bond, an ester formed from a carboxylic acid and a thiol (i.e., RCO-SR'), such as that found in acetyl-coenzyme A.
biological process
	GO:0006629	lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
cellular component
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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	1s5u
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(no "Related Entries Specified in the PDB File" available for 1S5U)

Description

Compounds

Structural Features

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Ligands, Modified Residues, Ions (2, 17)

Sites (17, 17)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

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