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Asym./Biol. Unit (Jmol Viewer)

Title :   PUTATIVE CYTOPLASMIC PROTEIN FROM SALMONELLA TYPHIMURIUM

Authors :   M. E. Cuff, H. Li, F. Collart, A. Joachimiak, Midwest Center For Stru Genomics (Mcsg)

Date :   16 Jan 04 (Deposition) - 29 Jun 04 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym./Biol. Unit : A,B

Keywords :   Structural Genomics, Mcsg, Salmonella Typhimurium, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. E. Cuff, H. Li, F. Collart, A. Joachimiak
Putative Cytoplasmic Protein From Salmonella Typhimurium
To Be Published
PubMed: search

Molecule 1 - PUTATIVE CYTOPLASMIC PROTEIN YDIL
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21
	Expression System Plasmid	:	PMAGIC
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Gene	:	YDIL
	Organism Scientific	:	SALMONELLA TYPHIMURIUM
	Organism Taxid	:	99287
	Strain	:	LT2

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 10)

No.	Name	Count	Type	Full Name
1	MSE	10	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 1S4K)

(no "SS Bond" information available for 1S4K)

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Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:120
 aligned with Q8ZPR1_SALTY | Q8ZPR1 from UniProtKB/TrEMBL  Length:119

    Alignment length:120
                             1                                                                                                                      
                             |       9        19        29        39        49        59        69        79        89        99       109       119
         Q8ZPR1_SALTY     - -MMNALELQALRRIFDMTIEECTIYITQDNNSATWQRWEAGDIPISPEIIARLKEMKARRQRRINAIVDKINNRIGNNTMRYFPDLSSFQSIYTEGDFIEWKIYQSVAAELFAHDLERLC 119
               SCOP domains d1s4ka_ A: Putative cytoplasmic protein YdiL                                                                             SCOP domains
               CATH domains 1s4kA00 A:0-119 Putative cytoplasmic protein                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh..hhhhhhhhh....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh......eee...hhhhhhh.....hhhhhhhhhhhhhhhhhh...eee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 1s4k A   0 AmmNALELQALRRIFDmTIEECTIYITQDNNSATWQRWEAGDIPISPEIIARLKEmKARRQRRINAIVDKINNRIGNNTmRYFPDLSSFQSIYTEGDFIEWKIYQSVAAELFAHDLERLC 119
                             ||      9      | 19        29        39        49     |  59        69        79        89        99       109       119
                             ||            16-MSE                                 55-MSE                  79-MSE                                    
                             1-MSE                                                                                                                  
                              2-MSE

Chain B from PDB  Type:PROTEIN  Length:120
 aligned with Q8ZPR1_SALTY | Q8ZPR1 from UniProtKB/TrEMBL  Length:119

    Alignment length:120
                             1                                                                                                                      
                             |       9        19        29        39        49        59        69        79        89        99       109       119
         Q8ZPR1_SALTY     - -MMNALELQALRRIFDMTIEECTIYITQDNNSATWQRWEAGDIPISPEIIARLKEMKARRQRRINAIVDKINNRIGNNTMRYFPDLSSFQSIYTEGDFIEWKIYQSVAAELFAHDLERLC 119
               SCOP domains d1s4kb_ B: Putative cytoplasmic protein YdiL                                                                             SCOP domains
               CATH domains 1s4kB00 B:0-119 Putative cytoplasmic protein                                                                             CATH domains
           Pfam domains (1) --DUF1870-1s4kB01 B:2-119                                                                                                Pfam domains (1)
           Pfam domains (2) --DUF1870-1s4kB02 B:2-119                                                                                                Pfam domains (2)
         Sec.struct. author ...hhhhhhhhhhhh..hhhhhhhhh....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....ee....hhhhhhh.....hhhhhhhhhhhhhhhhhh...ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 1s4k B   0 AmmNALELQALRRIFDmTIEECTIYITQDNNSATWQRWEAGDIPISPEIIARLKEmKARRQRRINAIVDKINNRIGNNTmRYFPDLSSFQSIYTEGDFIEWKIYQSVAAELFAHDLERLC 119
                             ||      9      | 19        29        39        49     |  59        69        79        89        99       109       119
                             1-MSE         16-MSE                                 55-MSE                  79-MSE                                    
                              2-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

)

Protein Domains( (-)

)

Organisms( (-)

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Class: All alpha proteins (14657)

Fold: lambda repressor-like DNA-binding domains (180)

Superfamily: lambda repressor-like DNA-binding domains (180)

Family: YdiL-like (2)

Protein domain: Putative cytoplasmic protein YdiL (1)

Salmonella typhimurium [TaxId: 90371] (1)

1a	d1s4ka_	A:
1b	d1s4kb_	B:

Asymmetric/Biological Unit

Classes(

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Architectures( (-)

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Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

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Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Putative cytoplasmic protein (2)

Homologous Superfamily: Putative cytoplasmic protein (2)

Salmonella typhimurium lt2. Organism_taxid: 99287. Strain: lt2. (1)

1a	1s4kA00	A:0-119
1b	1s4kB00	B:0-119

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: HTH (544)

Family: DUF1870 (1)

Salmonella typhimurium (1)

1a	DUF1870-1s4kB01	B:2-119
1b	DUF1870-1s4kB02	B:2-119

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (Q8ZPR1_SALTY | Q8ZPR1)

molecular function
	GO:0003677		DNA binding		Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

Asymmetric/Biological Unit
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