1RXT - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HUMAN MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE.

Authors :   J. Yang, Y. Wang, G. Frey, R. H. Abeles, G. A. Petsko, D. Ringe

Date :   18 Dec 03 (Deposition) - 12 Apr 05 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Alpha-Beta Structure; Unique N-Myristoyltransferase Fold (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Yang, Y. Wang, G. Frey, R. H. Abeles, G. A. Petsko, D. Ringe
Crystal Structure Of Human Myristoyl-Coa:Protein N-Myristoyltransferase
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE 1
	Chains	:	A, B, C, D
	Coa	:	PROTEIN N-MYRISTOYLTRANSFERASE 1
	EC Number	:	2.3.1.97
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	CATALYTIC DOMAIN
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	PEPTIDE N-MYRISTOYLTRANSFERASE 1; MYRISTOYL-

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 5)

No.	Name	Count	Type	Full Name
1	CO	1	Ligand/Ion	COBALT (II) ION
2	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 4 (0, 0)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	SO4	-1	Ligand/Ion	SULFATE ION

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU C:276 , PHE C:298 , PHE C:326 , TYR C:352 , VAL C:354	BINDING SITE FOR RESIDUE CO C 990
2	AC2	SOFTWARE	PHE B:314 , LYS B:391	BINDING SITE FOR RESIDUE SO4 B 901
3	AC3	SOFTWARE	LYS A:176 , ARG A:178 , ARG B:239	BINDING SITE FOR RESIDUE SO4 A 902
4	AC4	SOFTWARE	ASN A:426 , LYS A:428	BINDING SITE FOR RESIDUE SO4 A 903
5	AC5	SOFTWARE	PRO C:376	BINDING SITE FOR RESIDUE SO4 C 904

(no "SS Bond" information available for 1RXT)

(no "Cis Peptide Bond" information available for 1RXT)

(no "SAP(SNP)/Variant" information available for 1RXT)

Asymmetric Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NMT_1	PS00975	Myristoyl-CoA:protein N-myristoyltransferase signature 1.	NMT1_HUMAN	244-252	4	A:167-175 B:167-175 C:167-175 D:167-175
2	NMT_2	PS00976	Myristoyl-CoA:protein N-myristoyltransferase signature 2.	NMT1_HUMAN	466-472	4	A:412-418 B:412-418 C:412-418 D:412-418

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NMT_1	PS00975	Myristoyl-CoA:protein N-myristoyltransferase signature 1.	NMT1_HUMAN	244-252	1	A:167-175 - - -
2	NMT_2	PS00976	Myristoyl-CoA:protein N-myristoyltransferase signature 2.	NMT1_HUMAN	466-472	1	A:412-418 - - -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NMT_1	PS00975	Myristoyl-CoA:protein N-myristoyltransferase signature 1.	NMT1_HUMAN	244-252	1	- B:167-175 - -
2	NMT_2	PS00976	Myristoyl-CoA:protein N-myristoyltransferase signature 2.	NMT1_HUMAN	466-472	1	- B:412-418 - -

Biological Unit 3 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NMT_1	PS00975	Myristoyl-CoA:protein N-myristoyltransferase signature 1.	NMT1_HUMAN	244-252	1	- - C:167-175 -
2	NMT_2	PS00976	Myristoyl-CoA:protein N-myristoyltransferase signature 2.	NMT1_HUMAN	466-472	1	- - C:412-418 -

Biological Unit 4 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NMT_1	PS00975	Myristoyl-CoA:protein N-myristoyltransferase signature 1.	NMT1_HUMAN	244-252	1	- - - D:167-175
2	NMT_2	PS00976	Myristoyl-CoA:protein N-myristoyltransferase signature 2.	NMT1_HUMAN	466-472	1	- - - D:412-418

Asymmetric Unit (9, 36)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000258960	1	ENSE00001324312	chr17:43138680-43138828	149	NMT1_HUMAN	1-44	44	0	-	-
1.2	ENST00000258960	2	ENSE00001134100	chr17:43159012-43159120	109	NMT1_HUMAN	44-80	37	0	-	-
1.3	ENST00000258960	3	ENSE00000924941	chr17:43163876-43164020	145	NMT1_HUMAN	81-129	49	0	-	-
1.4	ENST00000258960	4	ENSE00000924940	chr17:43171053-43171171	119	NMT1_HUMAN	129-168	40	4	A:78-91 B:78-91 C:85-91 D:85-91	14 14 7 7
1.5	ENST00000258960	5	ENSE00000924939	chr17:43173562-43173653	92	NMT1_HUMAN	169-199	31	4	A:92-122 B:92-122 C:92-122 D:92-122	31 31 31 31
1.6	ENST00000258960	6	ENSE00000924938	chr17:43174496-43174612	117	NMT1_HUMAN	199-238	40	4	A:122-161 B:122-161 C:122-161 (gaps) D:122-161 (gaps)	40 40 40 40
1.7	ENST00000258960	7	ENSE00000924937	chr17:43175750-43175920	171	NMT1_HUMAN	238-295	58	4	A:161-218 B:161-218 C:161-218 D:161-218	58 58 58 58
1.8	ENST00000258960	8	ENSE00000924936	chr17:43176773-43176881	109	NMT1_HUMAN	295-331	37	4	A:218-254 B:218-254 C:218-254 D:218-254	37 37 37 37
1.9	ENST00000258960	9	ENSE00000924935	chr17:43180319-43180489	171	NMT1_HUMAN	332-388	57	4	A:255-317 (gaps) B:255-317 (gaps) C:255-317 (gaps) D:255-317 (gaps)	63 63 63 63
1.10	ENST00000258960	10	ENSE00000924934	chr17:43181077-43181244	168	NMT1_HUMAN	389-444	56	4	A:318-390 (gaps) B:318-390 (gaps) C:318-390 (gaps) D:318-390 (gaps)	73 73 73 73
1.11	ENST00000258960	11	ENSE00000924933	chr17:43182227-43182364	138	NMT1_HUMAN	445-490	46	4	A:391-449 (gaps) B:391-449 (gaps) C:391-449 (gaps) D:391-449 (gaps)	59 59 59 59
1.12	ENST00000258960	12	ENSE00001110185	chr17:43182987-43186377	3391	NMT1_HUMAN	491-496	6	4	A:450-455 B:450-455 C:450-455 D:450-455	6 6 6 6

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:342
 aligned with NMT1_HUMAN | P30419 from UniProtKB/Swiss-Prot  Length:496

    Alignment length:342
                                   164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494  
           NMT1_HUMAN   155 GFTWDALDLGDRGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIHIYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLTRYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWKCPSMGAEKVGLVLQ 496
               SCOP domains d1rxta1 A:78-218 N-myristoyl transferase, NMT                                                                                                d1rxta2 A:219-455 N-myristoyl transferase, NMT                                                                                                                                                            SCOP domains
               CATH domains 1rxtA01 A:78-200  [code=3.40.630.30, no name defined]                                                                      1rxtA02 A:201-455  [code=3.40.630.30, no name defined]                                                                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhh..............hhhhhhhhhh....hhhhheeee......eeeee..ee............ee....ee........hhhhhhhhhhhhhh......eeeee..................hhhhhhhh...........hhhhhhh..........eee.hhhhhhhhhhhhhhhh........................eeeeee.........eeeee......................ee.......hhhhhhhhhhhhh...........hhhhhh............eeee.................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------NMT_1    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NMT_2  ------------------------ PROSITE
           Transcript 1 (1) Exon 1.4      Exon 1.5  PDB: A:92-122        --------------------------------------Exon 1.7  PDB: A:161-218 UniProt: 238-295                 ------------------------------------Exon 1.9  PDB: A:255-317 (gaps) UniProt: 332-388         Exon 1.10  PDB: A:318-390 (gaps) UniProt: 389-444       Exon 1.11  PDB: A:391-449 (gaps)              1.12   Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------Exon 1.6  PDB: A:122-161                --------------------------------------------------------Exon 1.8  PDB: A:218-254             --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1rxt A  78 GFTWDALDLGDRGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIHIYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLTRYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWKCPSMGAEKVGIVLQ 455
                                    87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297     ||313       323       333       343       353  ||   380       390       400       410       420       430  ||   453  
                                                                                                                                                                                                                                                           303|                                           356|                                                        433|        
                                                                                                                                                                                                                                                            310                                            374                                                         447

Chain B from PDB  Type:PROTEIN  Length:342
 aligned with NMT1_HUMAN | P30419 from UniProtKB/Swiss-Prot  Length:496

    Alignment length:342
                                   164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494  
           NMT1_HUMAN   155 GFTWDALDLGDRGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIHIYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLTRYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWKCPSMGAEKVGLVLQ 496
               SCOP domains d1rxtb1 B:78-218 N-myristoyl transferase, NMT                                                                                                d1rxtb2 B:219-455 N-myristoyl transferase, NMT                                                                                                                                                            SCOP domains
               CATH domains 1rxtB01 B:78-200  [code=3.40.630.30, no name defined]                                                                      1rxtB02 B:201-455  [code=3.40.630.30, no name defined]                                                                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhh..............hhhhhhhhhh....hhhhheee........eeee..ee............ee..............hhhhhhhhhhhhhh......eeeee..................hhhhhhhh...........hhhhhhh..........eee.hhhhhhhhhhhhhhhh........................eeeeee.........eeeee......................ee.......hhhhhhhhhhhhh...........hhhhhh............eeee.................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------NMT_1    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NMT_2  ------------------------ PROSITE
           Transcript 1 (1) Exon 1.4      Exon 1.5  PDB: B:92-122        --------------------------------------Exon 1.7  PDB: B:161-218 UniProt: 238-295                 ------------------------------------Exon 1.9  PDB: B:255-317 (gaps) UniProt: 332-388         Exon 1.10  PDB: B:318-390 (gaps) UniProt: 389-444       Exon 1.11  PDB: B:391-449 (gaps)              1.12   Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------Exon 1.6  PDB: B:122-161                --------------------------------------------------------Exon 1.8  PDB: B:218-254             --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1rxt B  78 GFTWDALDLGDRGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIHIYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLTRYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWKCPSMGAEKVGIVLQ 455
                                    87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297     ||313       323       333       343       353  ||   380       390       400       410       420       430  ||   453  
                                                                                                                                                                                                                                                           303|                                           356|                                                        433|        
                                                                                                                                                                                                                                                            310                                            374                                                         447

Chain C from PDB  Type:PROTEIN  Length:325
 aligned with NMT1_HUMAN | P30419 from UniProtKB/Swiss-Prot  Length:496

    Alignment length:335
                                   171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491     
           NMT1_HUMAN   162 DLGDRGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIHIYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLTRYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWKCPSMGAEKVGLVLQ 496
               SCOP domains d1rxtc1 C:85-218 N-myristoyl transferase, NMT                                                                                         d1rxtc2 C:219-455 N-myristoyl transferase, NMT                                                                                                                                                            SCOP domains
               CATH domains 1rxtC01 C:85-214,C:419-428  [code=3.40.630.30, no name         defined]                                                           1rxtC02 C:215-418,C:429-455  [code=3.40.630.30, no name defined]                                                                                                                     1rxtC01   1rxtC02 C:215- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh..............hhhhhhhhhh....hhhhhee..--------.ee..ee............ee..............hhhhhhhhhhhhhh......eeeee..................hhhhhhhh...........hhhhhhh..........eee.hhhhhhhhhhhhhhhh........................eeeeee.........eeeee........--............ee.......hhhhhhhhhhhhh...........hhhhhh............eeee........hhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------NMT_1    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NMT_2  ------------------------ PROSITE
           Transcript 1 (1) 1.4    Exon 1.5  PDB: C:92-122        --------------------------------------Exon 1.7  PDB: C:161-218 UniProt: 238-295                 ------------------------------------Exon 1.9  PDB: C:255-317 (gaps) UniProt: 332-388         Exon 1.10  PDB: C:318-390 (gaps) UniProt: 389-444       Exon 1.11  PDB: C:391-449 (gaps)              1.12   Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.6  PDB: C:122-161 (gaps)         --------------------------------------------------------Exon 1.8  PDB: C:218-254             --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1rxt C  85 DLGDRGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVR--------GFISAIPANIHIYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLTRYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMN--THKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWKCPSMGAEKVGIVLQ 455
                                    94       104       114       124       134   |     -  |    154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       310       320       330       | -|      350     ||377       387       397       407       417       427     ||450     
                                                                               138      147                                                                                                                                                         303|                         338  |            356|                                                        433|        
                                                                                                                                                                                                                                                     310                            341             374                                                         447

Chain D from PDB  Type:PROTEIN  Length:326
 aligned with NMT1_HUMAN | P30419 from UniProtKB/Swiss-Prot  Length:496

    Alignment length:335
                                   171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491     
           NMT1_HUMAN   162 DLGDRGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIHIYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLTRYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWKCPSMGAEKVGLVLQ 496
               SCOP domains d1rxtd1 D:85-218 N-myristoyl transferase, NMT                                                                                         d1rxtd2 D:219-455 N-myristoyl transferase, NMT                                                                                                                                                            SCOP domains
               CATH domains 1rxtD01 D:85-214,D:419-428  [code=3.40.630.30, no nam         e defined]                                                          1rxtD02 D:215-418,D:429-455  [code=3.40.630.30, no name defined]                                                                                                                     1rxtD01   1rxtD02 D:215- CATH domains
           Pfam domains (1) NMT-1rxtD01 D:85-217                                                                                                                 -------------NMT_C-1rxtD05 D:231-454                                                                                                                                                                     - Pfam domains (1)
           Pfam domains (2) NMT-1rxtD02 D:85-217                                                                                                                 -------------NMT_C-1rxtD06 D:231-454                                                                                                                                                                     - Pfam domains (2)
           Pfam domains (3) NMT-1rxtD03 D:85-217                                                                                                                 -------------NMT_C-1rxtD07 D:231-454                                                                                                                                                                     - Pfam domains (3)
           Pfam domains (4) NMT-1rxtD04 D:85-217                                                                                                                 -------------NMT_C-1rxtD08 D:231-454                                                                                                                                                                     - Pfam domains (4)
         Sec.struct. author ...hhhhhhhhhhhhhh..............hhhhhhhhhh....hhhhh...---------.....ee..ee........ee..............hhhhhhhhhhhhhh......eeeee..................hhhhhhhh...........hhhhhhh..........eee.hhhhhhhhhhhhhhhh.....ee...................eeee.........eee........................ee.......hhhhhhhhhhhhh...........hhhhhh............eeee........hhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------NMT_1    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NMT_2  ------------------------ PROSITE
           Transcript 1 (1) 1.4    Exon 1.5  PDB: D:92-122        --------------------------------------Exon 1.7  PDB: D:161-218 UniProt: 238-295                 ------------------------------------Exon 1.9  PDB: D:255-317 (gaps) UniProt: 332-388         Exon 1.10  PDB: D:318-390 (gaps) UniProt: 389-444       Exon 1.11  PDB: D:391-449 (gaps)              1.12   Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.6  PDB: D:122-161 (gaps)         --------------------------------------------------------Exon 1.8  PDB: D:218-254             --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1rxt D  85 DLGDRGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGV---------GFISAIPANIHIYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLTRYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWKCPSMGAEKVGIVLQ 455
                                    94       104       114       124       134  |      -  |    154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       310       320       330       340       350     ||377       387       397       407       417       427     ||450     
                                                                              137       147                                                                                                                                                         303|                                           356|                                                        433|        
                                                                                                                                                                                                                                                     310                                            374                                                         447

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Acyl-CoA N-acyltransferases (Nat) (250)

Superfamily: Acyl-CoA N-acyltransferases (Nat) (250)

Family: N-myristoyl transferase, NMT (7)

Protein domain: N-myristoyl transferase, NMT (7)

Human (Homo sapiens) [TaxId: 9606] (1)

1a	d1rxta1	A:78-218
1b	d1rxta2	A:219-455
1c	d1rxtb1	B:78-218
1d	d1rxtb2	B:219-455
1e	d1rxtc1	C:85-218
1f	d1rxtc2	C:219-455
1g	d1rxtd1	D:85-218
1h	d1rxtd2	D:219-455

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Aminopeptidase (284)

Homologous Superfamily: [code=3.40.630.30, no name defined] (126)

Human (Homo sapiens) (4)

1a	1rxtC01	C:85-214,C:419-428
1b	1rxtB01	B:78-200
1c	1rxtC02	C:215-418,C:429-455
1d	1rxtD02	D:215-418,D:429-455
1e	1rxtA02	A:201-455
1f	1rxtB02	B:201-455
1g	1rxtD01	D:85-214,D:419-428
1h	1rxtA01	A:78-200

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Acetyltrans (109)

Family: NMT (9)

Homo sapiens (Human) (2)

1a	NMT-1rxtD01	D:85-217
1b	NMT-1rxtD02	D:85-217
1c	NMT-1rxtD03	D:85-217
1d	NMT-1rxtD04	D:85-217

Clan: no clan defined [family: NMT_C] (9)

Family: NMT_C (9)

Homo sapiens (Human) (2)

2a	NMT_C-1rxtD05	D:231-454
2b	NMT_C-1rxtD06	D:231-454
2c	NMT_C-1rxtD07	D:231-454
2d	NMT_C-1rxtD08	D:231-454

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (NMT1_HUMAN | P30419)

molecular function
	GO:0004379	glycylpeptide N-tetradecanoyltransferase activity	Catalysis of the reaction: tetradecanoyl-CoA + glycyl-peptide = CoA + N-tetradecanoylglycyl-peptide.
	GO:0019107	myristoyltransferase activity	Catalysis of the transfer of a myristoyl (CH3-[CH2]12-CO-) group to an acceptor molecule.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
	GO:0018008	N-terminal peptidyl-glycine N-myristoylation	The myristoylation of the N-terminal glycine of proteins to form the derivative N-myristoyl-glycine.
	GO:0006499	N-terminal protein myristoylation	The covalent attachment of a myristoyl group to the N-terminal amino acid residue of a protein.
	GO:0001701	in utero embryonic development	The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth. An example of this process is found in Mus musculus.
	GO:1900740	positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway	Any process that activates or increases the frequency, rate or extent of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway.
	GO:0022400	regulation of rhodopsin mediated signaling pathway	Any process that modulates the frequency, rate or extent of rhodopsin-mediated signaling.
cellular component
	GO:0015629	actin cytoskeleton	The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
	GO:0030054	cell junction	A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0019898	extrinsic component of membrane	The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric Unit
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	1rxt
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	NMT1_HUMAN \| P30419
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	2.3.1.97
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	NMT1_HUMAN \| P30419	:	3iu1 3iu2 3iwe 3jtk 4c2y 4c2z

(no "Related Entries Specified in the PDB File" available for 1RXT)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 5)

Sites (5, 5)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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Exons (9, 36)

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