1RTP - JenaLib

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP 1:51 , ASP 1:53 , SER 1:55 , PHE 1:57 , GLU 1:59 , GLU 1:62	BINDING SITE FOR RESIDUE CA 1 110
02	AC2	SOFTWARE	ASP 1:90 , ASP 1:92 , ASP 1:94 , LYS 1:96 , GLU 1:101 , HOH 1:121	BINDING SITE FOR RESIDUE CA 1 111
03	AC3	SOFTWARE	ASP 2:51 , ASP 2:53 , SER 2:55 , PHE 2:57 , GLU 2:59 , GLU 2:62	BINDING SITE FOR RESIDUE CA 2 110
04	AC4	SOFTWARE	ASP 2:90 , ASP 2:92 , ASP 2:94 , LYS 2:96 , GLU 2:101 , HOH 2:148	BINDING SITE FOR RESIDUE CA 2 111
05	AC5	SOFTWARE	ASP 3:51 , ASP 3:53 , SER 3:55 , PHE 3:57 , GLU 3:59 , GLU 3:62	BINDING SITE FOR RESIDUE CA 3 110
06	AC6	SOFTWARE	ASP 3:90 , ASP 3:92 , ASP 3:94 , LYS 3:96 , GLU 3:101 , HOH 3:145	BINDING SITE FOR RESIDUE CA 3 111
07	CA1	UNKNOWN	ASP 1:51 , ASP 1:53 , SER 1:55 , PHE 1:57 , GLU 1:59 , GLU 1:62	NULL
08	CA2	UNKNOWN	ASP 1:90 , ASP 1:92 , ASP 1:94 , LYS 1:96 , GLU 1:101 , HOH 1:121	NULL
09	CB1	UNKNOWN	ASP 2:51 , ASP 2:53 , SER 2:55 , PHE 2:57 , GLU 2:59 , GLU 2:62	NULL
10	CB2	UNKNOWN	ASP 2:90 , ASP 2:92 , ASP 2:94 , LYS 2:96 , GLU 2:101 , HOH 1:121	NULL
11	CC1	UNKNOWN	ASP 3:51 , ASP 3:53 , SER 3:55 , PHE 3:57 , GLU 3:59 , GLU 3:62	NULL
12	CC2	UNKNOWN	ASP 3:90 , ASP 3:92 , ASP 3:94 , LYS 3:96 , GLU 3:101 , HOH 1:121	NULL

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 12)

Asymmetric Unit (2, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EF_HAND_2	PS50222	EF-hand calcium-binding domain profile.	PRVA_RAT	39-74 78-110	6	1:38-73 2:38-73 3:38-73 1:77-109 2:77-109 3:77-109
2	EF_HAND_1	PS00018	EF-hand calcium-binding domain.	PRVA_RAT	52-64 91-103	6	1:51-63 2:51-63 3:51-63 1:90-102 2:90-102 3:90-102

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EF_HAND_2	PS50222	EF-hand calcium-binding domain profile.	PRVA_RAT	39-74 78-110	2	1:38-73 - - 1:77-109 - -
2	EF_HAND_1	PS00018	EF-hand calcium-binding domain.	PRVA_RAT	52-64 91-103	2	1:51-63 - - 1:90-102 - -

Biological Unit 2 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EF_HAND_2	PS50222	EF-hand calcium-binding domain profile.	PRVA_RAT	39-74 78-110	2	- 2:38-73 - - 2:77-109 -
2	EF_HAND_1	PS00018	EF-hand calcium-binding domain.	PRVA_RAT	52-64 91-103	2	- 2:51-63 - - 2:90-102 -

Biological Unit 3 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EF_HAND_2	PS50222	EF-hand calcium-binding domain profile.	PRVA_RAT	39-74 78-110	2	- - 3:38-73 - - 3:77-109
2	EF_HAND_1	PS00018	EF-hand calcium-binding domain.	PRVA_RAT	52-64 91-103	2	- - 3:51-63 - - 3:90-102

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain 1 from PDB  Type:PROTEIN  Length:109
 aligned with PRVA_RAT | P02625 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:109
                                    11        21        31        41        51        61        71        81        91       101         
             PRVA_RAT     2 SMTDLLSAEDIKKAIGAFTAADSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLVAES 110
               SCOP domains d1rtp1_ 1: Parvalbumin                                                                                        SCOP domains
               CATH domains 1rtp100 1:1-109 EF-hand                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh...hhhhhhhhhhhhh......ehhhhhhhhhhhhh......hhhhhhhhhhhhh......ehhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------------------------------EF_HAND_2  PDB: 1:38-73             ---EF_HAND_2  PDB: 1:77-109          PROSITE (1)
                PROSITE (2) --------------------------------------------------EF_HAND_1    --------------------------EF_HAND_1    ------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 1rtp 1   1 SMTDLLSAEDIKKAIGAFTAADSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLVAES 109
                                    10        20        30        40        50        60        70        80        90       100

Chain 2 from PDB  Type:PROTEIN  Length:109
 aligned with PRVA_RAT | P02625 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:109
                                    11        21        31        41        51        61        71        81        91       101         
             PRVA_RAT     2 SMTDLLSAEDIKKAIGAFTAADSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLVAES 110
               SCOP domains d1rtp2_ 2: Parvalbumin                                                                                        SCOP domains
               CATH domains 1rtp200 2:1-109 EF-hand                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh...hhhhhhhhhhhhh......ehhhhhhhhhhhhh......hhhhhhhhhhhhh......ehhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------------------------------EF_HAND_2  PDB: 2:38-73             ---EF_HAND_2  PDB: 2:77-109          PROSITE (1)
                PROSITE (2) --------------------------------------------------EF_HAND_1    --------------------------EF_HAND_1    ------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 1rtp 2   1 SMTDLLSAEDIKKAIGAFTAADSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLVAES 109
                                    10        20        30        40        50        60        70        80        90       100

Chain 3 from PDB  Type:PROTEIN  Length:109
 aligned with PRVA_RAT | P02625 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:109
                                    11        21        31        41        51        61        71        81        91       101         
             PRVA_RAT     2 SMTDLLSAEDIKKAIGAFTAADSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLVAES 110
               SCOP domains d1rtp3_ 3: Parvalbumin                                                                                        SCOP domains
               CATH domains 1rtp300 3:1-109 EF-hand                                                                                       CATH domains
           Pfam domains (1) --EF_hand_5-1rtp301 3:3-106                                                                               --- Pfam domains (1)
           Pfam domains (2) --EF_hand_5-1rtp302 3:3-106                                                                               --- Pfam domains (2)
           Pfam domains (3) --EF_hand_5-1rtp303 3:3-106                                                                               --- Pfam domains (3)
           Pfam domains (4) --------------------------------------------------------------EF_hand_6-1rtp304 3:63-109                      Pfam domains (4)
           Pfam domains (5) --------------------------------------------------------------EF_hand_6-1rtp305 3:63-109                      Pfam domains (5)
           Pfam domains (6) --------------------------------------------------------------EF_hand_6-1rtp306 3:63-109                      Pfam domains (6)
         Sec.struct. author hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh...hhhhhhhhhhhhh......ehhhhhhhhhhhhh......hhhhhhhhhhhhh......ehhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------------------------------EF_HAND_2  PDB: 3:38-73             ---EF_HAND_2  PDB: 3:77-109          PROSITE (1)
                PROSITE (2) --------------------------------------------------EF_HAND_1    --------------------------EF_HAND_1    ------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 1rtp 3   1 SMTDLLSAEDIKKAIGAFTAADSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLVAES 109
                                    10        20        30        40        50        60        70        80        90       100

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 3)

CATH Domains (1, 3)

Pfam Domains (2, 6)

Gene Ontology (12, 12)

Asymmetric Unit(hide GO term definitions)

Chain 1,2,3 (PRVA_RAT | P02625)

molecular function
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0046982	protein heterodimerization activity	Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
	GO:0051480	regulation of cytosolic calcium ion concentration	Any process involved in the maintenance of an internal steady state of calcium ions within the cytosol of a cell or between the cytosol and its surroundings.
cellular component
	GO:0030424	axon	The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0043025	neuronal cell body	The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0043234	protein complex	A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.
	GO:0043195	terminal bouton	Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters. The axon terminus is considered to be the whole region of thickening and the terminal bouton is a specialized region of it.

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	1rtp
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 6)

Sites (12, 12)