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Title :   ANTI-COCAINE ANTIBODY M82G2 COMPLEXED WITH NORBENZOYLECGONINE

Authors :   E. Pozharski, A. Hewagama, A. Shanafelt, G. Petsko, D. Ringe

Date :   18 Nov 03 (Deposition) - 02 Dec 03 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : H,L

Keywords :   Anti-Cocaine Antibody, Fab, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Pozharski, A. Hewagama, A. Shanafelt, G. Petsko, D. Ringe
Carving A Binding Site: Structural Study Of An Anti-Cocaine Antibody In Complex With Three Cocaine Analogs
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - FAB M82G2, LIGHT CHAIN
	Chains	:	L
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090

Molecule 2 - FAB M82G2, HEAVY CHAIN
	Chains	:	H
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090

		1	2
Asymmetric/Biological Unit	:	H	L

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 1)

No.	Name	Count	Type	Full Name
1	RBE	1	Ligand/Ion	3-(BENZOYLOXY)-8-AZA-BICYCLO[3.2.1]OCTANE-2-CARBOXYLIC ACID

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP H:31 , TRP H:33 , VAL H:95 , LEU H:98 , GLY H:99 , HOH H:229 , HOH H:230 , TYR L:32 , HIS L:91 , TYR L:94 , HOH L:281	BINDING SITE FOR RESIDUE RBE H 201

Asymmetric/Biological Unit

No.	Residues
1	H:22	-	H:92
2	H:142	-	H:208
3	L:23	-	L:88
4	L:134	-	L:194

Asymmetric/Biological Unit

No.	Residues
1	Tyr L:94	-	Pro L:95
2	Tyr L:140	-	Pro L:141
3	Phe H:148	-	Pro H:149
4	Glu H:150	-	Pro H:151
5	Trp H:199	-	Pro H:200

(no "SAP(SNP)/Variant" information available for 1RIU)

(no "PROSITE Motif" information available for 1RIU)

(no "Exon" information available for 1RIU)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain H from PDB  Type:PROTEIN  Length:220
                                                                                                                                                                                                                                                             
               SCOP domains d1riuh1 H:1-113 Immunoglobulin heavy chain variable domain, VH                                                           d1riuh2 H:114-228 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                     SCOP domains
               CATH domains 1riuH01 H:1-113 Immunoglobulins                                                                                          1riuH02 H:114-216 Immunoglobulins                                                        ---------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhheeeeeeee...eeeeeeee.hhhhh..eee.hhhh..eeeeeehhh.eeeeee...hhhhheeeeeeee........ee...eeeee........eeeee.........eeeeeeeeeee.....eeee.hhh....eee...eee..eeeeeeeeeee.........eeeeee....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1riu H    1 EVTLQESGGGLVQPGGSMKLSCAASGFTFSDAWVDWVRQSPGKGLEWVAEIRNKANNHATKYTESVKGRFTISRDDSKSSVYLQMNSLRAEDTGIYYCTSVPQLGRGFAYWGQGTLVTVSAASTTPPSVYPLAPGSGGAGSMVTLGCLVKGYFPEPVTVTWNSGALSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSQTVTCNVAHPASSTQVDKKIVPK  228
                                    10        20        30        40        50  |||   57        67        77     |||84        94      |102       112       122       135       145       156||     171       181|      193  || ||205||     216      |228
                                                                              52A||                            82A||               100A|                            131|                154|||    169|       181|         196| || 206|            223|  
                                                                               52B|                             82B|                100B                             135                 156||     171        184          198 ||  208             226  
                                                                                52C                              82C                                                                      157|                               200|                       
                                                                                                                                                                                           162                                202

Chain L from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                           
               SCOP domains d1riul1 L:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                      d1riul2 L:108-213 Immunoglobulin light chain kappa constant domain, CL-kappa                               SCOP domains
               CATH domains 1riuL01 L:1-108 Immunoglobulins                                                                                  1riuL02 L:109-205 Immunoglobulins                                                                -------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee....eeee.....eeeeeee............eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeee.......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..eee...eeeee.........eeeeeeeeeehhhhhhh.eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1riu L    1 DIVMTQAAPSVPVTPGESVSISCRSSKSLLHSNGYTYLHWFLQRPGQSPQLLIYRVSNLASGVPDRFSGSGSGTAFTLRFSRVEAEDVGVYYCMQHLEYPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPQDITVSWKIDGAERSSGVLNSWTDQDSSDSTYSMSSTLTLTKDEYERHSSYTCEATHKTSTSPITKSFNRGE  213
                                    10        20       27C||      35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205        
                                                     27A||||                                                                                                                                                                                          
                                                      27B|||                                                                                                                                                                                          
                                                       27C||                                                                                                                                                                                          
                                                        27D|                                                                                                                                                                                          
                                                         27E

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: Immunoglobulins (2282)

House mouse (Mus musculus) (616)

1a	1riuL02	L:109-205
1b	1riuL01	L:1-108
1c	1riuH01	H:1-113
1d	1riuH02	H:114-216

(no "Pfam Domain" information available for 1RIU)

Asymmetric/Biological Unit(hide GO term definitions)

(no "Gene Ontology" information available for 1RIU)

Asymmetric/Biological Unit
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		Phe H:148 - Pro H:149	[ RasMol ]
		Trp H:199 - Pro H:200	[ RasMol ]
		Tyr L:140 - Pro L:141	[ RasMol ]
		Tyr L:94 - Pro L:95	[ RasMol ]

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1q72	ANTI-COCAINE ANTIBODY M82G2 COMPLEXED WITH COCAINE
1qyg	ANTI-COCAINE ANTIBODY M82G2 COMPLEXED WITH BENZOYLECGONINE
1riv	ANTI-COCAINE ANTIBODY M82G2 COMPLEXED WITH META- OXYBENZOYLECGONINE

Description

Compounds

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Ligands, Modified Residues, Ions (1, 1)

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SS Bonds (4, 4)

Cis Peptide Bonds (5, 5)

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