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(-) Description

Title :  F420-DEPENDENT SECONDARY ALCOHOL DEHYDROGENASE IN COMPLEX WITH AN F420-ACETONE ADDUCT
 
Authors :  S. W. Aufhammer, E. Warkentin, H. Berk, S. Shima, R. K. Thauer, U. Ermler
Date :  14 Nov 03  (Deposition) - 30 Mar 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  (Alpha, Beta)8 Barrel, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. W. Aufhammer, E. Warkentin, H. Berk, S. Shima, R. K. Thauer, U. Ermler
Coenzyme Binding In F(420)-Dependent Secondary Alcohol Dehydrogenase, A Member Of The Bacterial Luciferase Family.
Structure V. 12 361 2004
PubMed-ID: 15016352  |  Reference-DOI: 10.1016/J.STR.2004.02.010
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - F420-DEPENDENT ALCOHOL DEHYDROGENASE
    Chains: A
    EC Number: 1.1.99.-
    Organism Scientific: METHANOCULLEUS THERMOPHILUS
    Organism Taxid: 2200

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric Unit (4, 5)
No.NameCountTypeFull Name
1ACN1Ligand/IonACETONE
2CL2Ligand/IonCHLORIDE ION
3F421Ligand/IonCOENZYME F420
4K1Ligand/IonPOTASSIUM ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1ACN2Ligand/IonACETONE
2CL-1Ligand/IonCHLORIDE ION
3F422Ligand/IonCOENZYME F420
4K-1Ligand/IonPOTASSIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:14 , ARG A:15 , ASP A:18BINDING SITE FOR RESIDUE CL A 391
2AC2SOFTWARESER A:10 , GLN A:13 , TRP A:229 , TRP A:246 , ASN A:309BINDING SITE FOR RESIDUE CL A 392
3AC3SOFTWAREARG A:93 , GLY A:98 , ASP A:166 , HOH A:431BINDING SITE FOR RESIDUE K A 397
4AC4SOFTWAREASP A:37 , ASP A:38 , HIS A:39 , CYS A:72 , ILE A:73 , GLY A:107 , GLU A:108 , ASN A:111 , GLN A:126 , SER A:173 , MET A:175 , GLY A:176 , PRO A:177 , LYS A:178 , GLY A:179 , MET A:191 , THR A:192 , VAL A:193 , LEU A:227 , PHE A:255 , LYS A:256 , ACN A:352 , HOH A:405 , HOH A:407 , HOH A:417 , HOH A:523 , HOH A:554BINDING SITE FOR RESIDUE F42 A 351
5AC5SOFTWAREHIS A:39 , TRP A:43 , GLU A:108 , F42 A:351BINDING SITE FOR RESIDUE ACN A 352

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1RHC)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Cys A:72 -Ile A:73

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1RHC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1RHC)

(-) Exons   (0, 0)

(no "Exon" information available for 1RHC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:330
 aligned with O93734_9EURY | O93734 from UniProtKB/TrEMBL  Length:330

    Alignment length:330
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330
         O93734_9EURY     1 MKTQIGYFASLEQYRPMDALEQAIRAEKVGFDSVWVDDHFHPWYHDNAQSAQAWAWMGAALQATKKVFISTCITCPIMRYNPAIVAQTFATLRQMYPGRVGVAVGAGEAMNEVPVTGEWPSVPVRQDMTVEAVKVMRMLWESDKPVTFKGDYFTLDKAFLYTKPDDEVPLYFSGMGPKGAKLAGMYGDHLMTVAAAPSTLKNVTIPKFEEGAREAGKDPSKMEHAMLIWYSVDPDYDKAVEALRFWAGCLVPSMFKYKVYDPKEVQLHANLVHCDTIKENYMCATDAEEMIKEIERFKEAGINHFCLGNSSPDVNFGIDIFKEVIPAVRD 330
               SCOP domains d1rhca_ A: Coenzyme F420 dependent secondary alcohol dehydrogenase                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1rhcA00 A:1-330 FMN dependent fluorescent proteins                                                                                                                                                                                                                                                                                         CATH domains
               Pfam domains Bac_luciferase-1rhcA01 A:1-304                                                                                                                                                                                                                                                                                  -------------------------- Pfam domains
         Sec.struct. author ...eeeee......hhhhhhhhhhhhhhhh..eeee...............hhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh...eeee....eeeee...........eeee..hhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhhhhhhh..hhhhh.eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh..hhhhhhhhheee.hhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1rhc A   1 MKTQIGYFASLEQYRPMDALEQAIRAEKVGFDSVWVDDHFHPWYHDNAQSAQAWAWMGAALQATKKVFISTCITCPIMRYNPAIVAQTFATLRQMYPGRVGVAVGAGEAMNEVPVTGEWPSVPVRQDMTVEAVKVMRMLWESDKPVTFKGDYFTLDKAFLYTKPDDEVPLYFSGMGPKGAKLAGMYGDHLMTVAAAPSTLKNVTIPKFEEGAREAGKDPSKMEHAMLIWYSVDPDYDKAVEALRFWAGCLVPSMFKYKVYDPKEVQLHANLVHCDTIKENYMCATDAEEMIKEIERFKEAGINHFCLGNSSPDVNFGIDIFKEVIPAVRD 330
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: no clan defined [family: Bac_luciferase] (10)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A   (O93734_9EURY | O93734)
molecular function
    GO:0016705    oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen    Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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