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(-) Description

Title :  CRYSTAL STRUCTURE OF PYRIDOXAL KINASE COMPLEXED WITH ADP AND PLP
 
Authors :  D. -C. Liang, T. Jiang, M. -H. Li
Date :  10 Nov 03  (Deposition) - 27 Apr 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,E  (1x)
Biol. Unit 2:  B,F  (1x)
Biol. Unit 3:  C,H  (1x)
Biol. Unit 4:  D,G  (1x)
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. -H. Li, F. Kwok, W. -R. Chang, S. -Q. Liu, S. C. L. Lo, J. -P. Zhang, T. Jiang, D. -C. Liang
Conformational Changes In The Reaction Of Pyridoxal Kinase
J. Biol. Chem. V. 279 17459 2004
PubMed-ID: 14722069  |  Reference-DOI: 10.1074/JBC.M312380200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PYRIDOXAL KINASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 2.7.1.35
    Organism Common: SHEEP
    Organism Scientific: OVIS ARIES
    Organism Taxid: 9940
    Synonym: PYRIDOXINE KINASE

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A   E   
Biological Unit 2 (1x):  B   F  
Biological Unit 3 (1x):   C    H
Biological Unit 4 (1x):    D  G 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 24)

Asymmetric Unit (3, 24)
No.NameCountTypeFull Name
1ADP8Ligand/IonADENOSINE-5'-DIPHOSPHATE
2PLP8Ligand/IonPYRIDOXAL-5'-PHOSPHATE
3ZN8Ligand/IonZINC ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2PLP2Ligand/IonPYRIDOXAL-5'-PHOSPHATE
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2PLP2Ligand/IonPYRIDOXAL-5'-PHOSPHATE
3ZN-1Ligand/IonZINC ION
Biological Unit 3 (2, 4)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2PLP2Ligand/IonPYRIDOXAL-5'-PHOSPHATE
3ZN-1Ligand/IonZINC ION
Biological Unit 4 (2, 4)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2PLP2Ligand/IonPYRIDOXAL-5'-PHOSPHATE
3ZN-1Ligand/IonZINC ION

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:127 , PLP A:401 , ADP A:402BINDING SITE FOR RESIDUE ZN A 403
02AC2SOFTWAREVAL B:115 , PLP B:1401 , ADP B:1402BINDING SITE FOR RESIDUE ZN B 1403
03AC3SOFTWAREVAL C:115 , PLP C:2401 , ADP C:2402BINDING SITE FOR RESIDUE ZN C 2403
04AC4SOFTWAREASP D:113 , VAL D:115 , PLP D:3401 , ADP D:3402BINDING SITE FOR RESIDUE ZN D 3403
05AC5SOFTWAREASP E:113 , VAL E:115 , PLP E:4401 , ADP E:4402BINDING SITE FOR RESIDUE ZN E 4403
06AC6SOFTWAREASP F:113 , VAL F:115 , PLP F:5401 , ADP F:5402BINDING SITE FOR RESIDUE ZN F 5403
07AC7SOFTWAREASP G:113 , PLP G:6401 , ADP G:6402BINDING SITE FOR RESIDUE ZN G 6403
08AC8SOFTWAREASP H:113 , VAL H:115 , PLP H:7401 , ADP H:7402BINDING SITE FOR RESIDUE ZN H 7403
09AC9SOFTWARESER A:12 , VAL A:19 , THR A:47 , TYR A:84 , TYR A:127 , VAL A:231 , GLY A:232 , THR A:233 , GLY A:234 , ASP A:235 , ADP A:402 , ZN A:403BINDING SITE FOR RESIDUE PLP A 401
10BC1SOFTWAREASN A:150 , THR A:186 , SER A:187 , LEU A:199 , MET A:223 , HIS A:224 , LYS A:225 , VAL A:226 , ALA A:228 , THR A:233 , GLY A:234 , PHE A:237 , MET A:263 , LEU A:267 , PLP A:401 , ZN A:403BINDING SITE FOR RESIDUE ADP A 402
11BC2SOFTWARESER B:12 , VAL B:19 , THR B:47 , TYR B:84 , TYR B:127 , VAL B:231 , GLY B:232 , THR B:233 , GLY B:234 , ASP B:235 , ADP B:1402 , ZN B:1403BINDING SITE FOR RESIDUE PLP B 1401
12BC3SOFTWARETHR B:186 , SER B:187 , MET B:223 , HIS B:224 , LYS B:225 , VAL B:226 , ALA B:228 , THR B:233 , GLY B:234 , MET B:263 , LEU B:267 , PLP B:1401 , ZN B:1403BINDING SITE FOR RESIDUE ADP B 1402
13BC4SOFTWARESER C:12 , VAL C:19 , THR C:47 , TYR C:84 , TYR C:127 , VAL C:231 , GLY C:232 , THR C:233 , GLY C:234 , ASP C:235 , ADP C:2402 , ZN C:2403BINDING SITE FOR RESIDUE PLP C 2401
14BC5SOFTWAREASN C:150 , THR C:186 , SER C:187 , LEU C:199 , MET C:223 , HIS C:224 , LYS C:225 , VAL C:226 , ALA C:228 , THR C:233 , GLY C:234 , MET C:263 , LEU C:267 , PLP C:2401 , ZN C:2403BINDING SITE FOR RESIDUE ADP C 2402
15BC6SOFTWARESER D:12 , VAL D:19 , THR D:47 , TYR D:84 , TYR D:127 , VAL D:231 , GLY D:232 , THR D:233 , GLY D:234 , ASP D:235 , ADP D:3402 , ZN D:3403BINDING SITE FOR RESIDUE PLP D 3401
16BC7SOFTWAREASN D:150 , THR D:186 , SER D:187 , LEU D:199 , MET D:223 , HIS D:224 , LYS D:225 , VAL D:226 , ALA D:228 , THR D:233 , GLY D:234 , MET D:263 , LEU D:267 , PLP D:3401 , ZN D:3403BINDING SITE FOR RESIDUE ADP D 3402
17BC8SOFTWARESER E:12 , VAL E:19 , THR E:47 , TYR E:84 , TYR E:127 , VAL E:231 , GLY E:232 , THR E:233 , GLY E:234 , ASP E:235 , ADP E:4402 , ZN E:4403BINDING SITE FOR RESIDUE PLP E 4401
18BC9SOFTWAREASN E:150 , THR E:186 , SER E:187 , MET E:223 , HIS E:224 , LYS E:225 , VAL E:226 , ALA E:228 , THR E:233 , GLY E:234 , MET E:263 , LEU E:267 , PLP E:4401 , ZN E:4403BINDING SITE FOR RESIDUE ADP E 4402
19CC1SOFTWARESER F:12 , VAL F:19 , THR F:47 , TYR F:84 , TYR F:127 , VAL F:231 , GLY F:232 , GLY F:234 , ASP F:235 , ADP F:5402 , ZN F:5403BINDING SITE FOR RESIDUE PLP F 5401
20CC2SOFTWAREASN F:150 , THR F:186 , SER F:187 , MET F:223 , HIS F:224 , LYS F:225 , VAL F:226 , ALA F:228 , THR F:233 , GLY F:234 , MET F:263 , LEU F:267 , PLP F:5401 , ZN F:5403BINDING SITE FOR RESIDUE ADP F 5402
21CC3SOFTWARESER G:12 , VAL G:19 , THR G:47 , TYR G:84 , TYR G:127 , VAL G:231 , GLY G:232 , GLY G:234 , ASP G:235 , ADP G:6402 , ZN G:6403BINDING SITE FOR RESIDUE PLP G 6401
22CC4SOFTWAREASN G:150 , THR G:186 , SER G:187 , MET G:223 , HIS G:224 , LYS G:225 , VAL G:226 , ALA G:228 , THR G:233 , GLY G:234 , MET G:263 , LEU G:267 , PLP G:6401 , ZN G:6403BINDING SITE FOR RESIDUE ADP G 6402
23CC5SOFTWARESER H:12 , VAL H:19 , THR H:47 , TYR H:84 , TYR H:127 , VAL H:231 , GLY H:232 , THR H:233 , GLY H:234 , ASP H:235 , ADP H:7402 , ZN H:7403BINDING SITE FOR RESIDUE PLP H 7401
24CC6SOFTWAREASN H:150 , THR H:186 , SER H:187 , MET H:223 , HIS H:224 , LYS H:225 , VAL H:226 , ALA H:228 , THR H:233 , GLY H:234 , MET H:263 , LEU H:267 , PLP H:7401 , ZN H:7403BINDING SITE FOR RESIDUE ADP H 7402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1RFU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1RFU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1RFU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1RFU)

(-) Exons   (0, 0)

(no "Exon" information available for 1RFU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:312
 aligned with PDXK_SHEEP | P82197 from UniProtKB/Swiss-Prot  Length:312

    Alignment length:312
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
           PDXK_SHEEP     1 MEEECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDELQELYDGLKLNHVNQYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRNGEGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVITSSNLLSPRGSDYLMALGSQRTRAPDGSVVTQRIRMEMHKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSAMHHVLQRTIKCAKAKSGEGVKPSPAQLELRMVQSKKDIESPEIVVQATVL 312
               SCOP domains d1rfua_ A: Pyridoxal kinase                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1rfuA00 A:1-312  [code=3.40.1190.20, no name defined]                                                                                                                                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeeee.....hhhhhhhhhhhh..eeeeeeeeee..........eee.hhhhhhhhhhhhhhhh.....eeee....hhhhhhhhhhhhhhhhhhh...eeee....ee......ee....hhhhhhhhhhhhhh.ee..hhhhhhhhhh....hhhhhhhhhhhhhhhh..eeeeeee.........eeeeeeeeeee.....eeeeeeeeeee.......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhh..hhhhhhhhhh.......ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1rfu A   1 MEEECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDELQELYDGLKLNHVNQYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRNGEGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVITSSNLLSPRGSDYLMALGSQRTRAPDGSVVTQRIRMEMHKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSAMHHVLQRTIKCAKAKSGEGVKPSPAQLELRMVQSKKDIESPEIVVQATVL 312
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  


Chain B from PDB  Type:PROTEIN  Length:312
 aligned with PDXK_SHEEP | P82197 from UniProtKB/Swiss-Prot  Length:312

    Alignment length:312
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
           PDXK_SHEEP     1 MEEECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDELQELYDGLKLNHVNQYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRNGEGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVITSSNLLSPRGSDYLMALGSQRTRAPDGSVVTQRIRMEMHKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSAMHHVLQRTIKCAKAKSGEGVKPSPAQLELRMVQSKKDIESPEIVVQATVL 312
               SCOP domains d1rfub_ B: Pyridoxal kinase                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1rfuB00 B:1-312  [code=3.40.1190.20, no name defined]                                                                                                                                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeeee.....hhhhhhhhhhhhh.eeeeeeeeee..........eee.hhhhhhhhhhhhhhhh.....eeee....hhhhhhhhhhhhhhhhhhh...eeee....ee......ee....hhhhhhhhhhhhhh.ee..hhhhhhhhhh....hhhhhhhhhhhhhhhh..eeeeeee.........eeeeeeeeeee.....eeeeeeeeeee.......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhh..hhhhhhhhhh.......ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1rfu B   1 MEEECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDELQELYDGLKLNHVNQYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRNGEGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVITSSNLLSPRGSDYLMALGSQRTRAPDGSVVTQRIRMEMHKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSAMHHVLQRTIKCAKAKSGEGVKPSPAQLELRMVQSKKDIESPEIVVQATVL 312
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  


Chain C from PDB  Type:PROTEIN  Length:312
 aligned with PDXK_SHEEP | P82197 from UniProtKB/Swiss-Prot  Length:312

    Alignment length:312
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
           PDXK_SHEEP     1 MEEECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDELQELYDGLKLNHVNQYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRNGEGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVITSSNLLSPRGSDYLMALGSQRTRAPDGSVVTQRIRMEMHKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSAMHHVLQRTIKCAKAKSGEGVKPSPAQLELRMVQSKKDIESPEIVVQATVL 312
               SCOP domains d1rfuc_ C: Pyridoxal kinase                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1rfuC00 C:1-312  [code=3.40.1190.20, no name defined]                                                                                                                                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeeee.....hhhhhhhhhhhhh.eeeeeeeeee..........eee.hhhhhhhhhhhhhhhh.....eeee....hhhhhhhhhhhhhhhhhhh...eeee....ee......ee....hhhhhhhhhhhhhh.ee..hhhhhhhhhh....hhhhhhhhhhhhhhhh..eeeeeee.........eeeeeeeeeee.....eeeeeeeeeee.......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhh..hhhhhhhhhh.......ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1rfu C   1 MEEECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDELQELYDGLKLNHVNQYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRNGEGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVITSSNLLSPRGSDYLMALGSQRTRAPDGSVVTQRIRMEMHKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSAMHHVLQRTIKCAKAKSGEGVKPSPAQLELRMVQSKKDIESPEIVVQATVL 312
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  


Chain D from PDB  Type:PROTEIN  Length:312
 aligned with PDXK_SHEEP | P82197 from UniProtKB/Swiss-Prot  Length:312

    Alignment length:312
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
           PDXK_SHEEP     1 MEEECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDELQELYDGLKLNHVNQYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRNGEGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVITSSNLLSPRGSDYLMALGSQRTRAPDGSVVTQRIRMEMHKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSAMHHVLQRTIKCAKAKSGEGVKPSPAQLELRMVQSKKDIESPEIVVQATVL 312
               SCOP domains d1rfud_ D: Pyridoxal kinase                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1rfuD00 D:1-312  [code=3.40.1190.20, no name defined]                                                                                                                                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeeee.....hhhhhhhhhhhh..eeeeeeeeee..........eee.hhhhhhhhhhhhhhhh.....eeee....hhhhhhhhhhhhhhhhhhh...eeee....ee......ee....hhhhhhhhhhhhhh.ee..hhhhhhhhhh....hhhhhhhhhhhhhhhh..eeeeeee.........eeeeeeeeeee.....eeeeeeeeeee.......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhh..hhhhhhhhhh.......ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1rfu D   1 MEEECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDELQELYDGLKLNHVNQYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRNGEGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVITSSNLLSPRGSDYLMALGSQRTRAPDGSVVTQRIRMEMHKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSAMHHVLQRTIKCAKAKSGEGVKPSPAQLELRMVQSKKDIESPEIVVQATVL 312
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  


Chain E from PDB  Type:PROTEIN  Length:312
 aligned with PDXK_SHEEP | P82197 from UniProtKB/Swiss-Prot  Length:312

    Alignment length:312
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
           PDXK_SHEEP     1 MEEECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDELQELYDGLKLNHVNQYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRNGEGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVITSSNLLSPRGSDYLMALGSQRTRAPDGSVVTQRIRMEMHKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSAMHHVLQRTIKCAKAKSGEGVKPSPAQLELRMVQSKKDIESPEIVVQATVL 312
               SCOP domains d1rfue_ E: Pyridoxal kinase                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1rfuE00 E:1-312  [code=3.40.1190.20, no name defined]                                                                                                                                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeeee.....hhhhhhhhhhhhh.eeeeeeeeee..........eee.hhhhhhhhhhhhhhhh.....eeee....hhhhhhhhhhhhhhhhhhh...eeee....ee......ee....hhhhhhhhhhhhhh.ee..hhhhhhhhhh....hhhhhhhhhhhhhhhh..eeeeeee.........eeeeeeeeeee.....eeeeeeeeeee.......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhh..hhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1rfu E   1 MEEECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDELQELYDGLKLNHVNQYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRNGEGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVITSSNLLSPRGSDYLMALGSQRTRAPDGSVVTQRIRMEMHKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSAMHHVLQRTIKCAKAKSGEGVKPSPAQLELRMVQSKKDIESPEIVVQATVL 312
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  


Chain F from PDB  Type:PROTEIN  Length:312
 aligned with PDXK_SHEEP | P82197 from UniProtKB/Swiss-Prot  Length:312

    Alignment length:312
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
           PDXK_SHEEP     1 MEEECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDELQELYDGLKLNHVNQYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRNGEGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVITSSNLLSPRGSDYLMALGSQRTRAPDGSVVTQRIRMEMHKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSAMHHVLQRTIKCAKAKSGEGVKPSPAQLELRMVQSKKDIESPEIVVQATVL 312
               SCOP domains d1rfuf_ F: Pyridoxal kinase                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1rfuF00 F:1-312  [code=3.40.1190.20, no name defined]                                                                                                                                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeeee.....hhhhhhhhhhhhh.eeeeeeeeee..........eee.hhhhhhhhhhhhhhhh.....eeee....hhhhhhhhhhhhhhhhhhh...eeee....ee......ee....hhhhhhhhhhhhhh.ee..hhhhhhhhhh....hhhhhhhhhhhhhhhh..eeeeeee.........eeeeeeeeeee.....eeeeeeeeeee.......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhh..hhhhhhhhhh.......ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1rfu F   1 MEEECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDELQELYDGLKLNHVNQYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRNGEGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVITSSNLLSPRGSDYLMALGSQRTRAPDGSVVTQRIRMEMHKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSAMHHVLQRTIKCAKAKSGEGVKPSPAQLELRMVQSKKDIESPEIVVQATVL 312
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  


Chain G from PDB  Type:PROTEIN  Length:312
 aligned with PDXK_SHEEP | P82197 from UniProtKB/Swiss-Prot  Length:312

    Alignment length:312
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
           PDXK_SHEEP     1 MEEECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDELQELYDGLKLNHVNQYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRNGEGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVITSSNLLSPRGSDYLMALGSQRTRAPDGSVVTQRIRMEMHKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSAMHHVLQRTIKCAKAKSGEGVKPSPAQLELRMVQSKKDIESPEIVVQATVL 312
               SCOP domains d1rfug_ G: Pyridoxal kinase                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1rfuG00 G:1-312  [code=3.40.1190.20, no name defined]                                                                                                                                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeeee.....hhhhhhhhhhhhh.eeeeeeeeee..........eee.hhhhhhhhhhhhhhhh.....eeee....hhhhhhhhhhhhhhhhhhh...eeee....ee......ee....hhhhhhhhhhhhhh.ee..hhhhhhhhhh....hhhhhhhhhhhhhhhh..eeeeeee.........eeeeeeeeeee.....eeeeeeeeeee.......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhh..hhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1rfu G   1 MEEECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDELQELYDGLKLNHVNQYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRNGEGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVITSSNLLSPRGSDYLMALGSQRTRAPDGSVVTQRIRMEMHKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSAMHHVLQRTIKCAKAKSGEGVKPSPAQLELRMVQSKKDIESPEIVVQATVL 312
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  


Chain H from PDB  Type:PROTEIN  Length:312
 aligned with PDXK_SHEEP | P82197 from UniProtKB/Swiss-Prot  Length:312

    Alignment length:312
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
           PDXK_SHEEP     1 MEEECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDELQELYDGLKLNHVNQYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRNGEGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVITSSNLLSPRGSDYLMALGSQRTRAPDGSVVTQRIRMEMHKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSAMHHVLQRTIKCAKAKSGEGVKPSPAQLELRMVQSKKDIESPEIVVQATVL 312
               SCOP domains d1rfuh_ H: Pyridoxal kinase                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1rfuH00 H:1-312  [code=3.40.1190.20, no name defined]                                                                                                                                                                                                                                                                    CATH domains
           Pfam domains (1) -PfkB-1rfuH01 H:2-284                                                                                                                                                                                                                                                                       ---------------------------- Pfam domains (1)
           Pfam domains (2) -PfkB-1rfuH02 H:2-284                                                                                                                                                                                                                                                                       ---------------------------- Pfam domains (2)
           Pfam domains (3) -PfkB-1rfuH03 H:2-284                                                                                                                                                                                                                                                                       ---------------------------- Pfam domains (3)
           Pfam domains (4) -PfkB-1rfuH04 H:2-284                                                                                                                                                                                                                                                                       ---------------------------- Pfam domains (4)
           Pfam domains (5) -PfkB-1rfuH05 H:2-284                                                                                                                                                                                                                                                                       ---------------------------- Pfam domains (5)
           Pfam domains (6) -PfkB-1rfuH06 H:2-284                                                                                                                                                                                                                                                                       ---------------------------- Pfam domains (6)
           Pfam domains (7) -PfkB-1rfuH07 H:2-284                                                                                                                                                                                                                                                                       ---------------------------- Pfam domains (7)
           Pfam domains (8) -PfkB-1rfuH08 H:2-284                                                                                                                                                                                                                                                                       ---------------------------- Pfam domains (8)
         Sec.struct. author .....eeeeeeeee.....hhhhhhhhhhhh..eeeeeeeeee..........eee.hhhhhhhhhhhhhhhh.....eeee....hhhhhhhhhhhhhhhhhhh...eeee....ee......ee....hhhhhhhhhhhhhh.ee..hhhhhhhhhh....hhhhhhhhhhhhhhhh..eeeeeee.........eeeeeeeeeee.....eeeeeeeeeee.......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhh..hhhhhhhhhh.......ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1rfu H   1 MEEECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDELQELYDGLKLNHVNQYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRNGEGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVITSSNLLSPRGSDYLMALGSQRTRAPDGSVVTQRIRMEMHKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSAMHHVLQRTIKCAKAKSGEGVKPSPAQLELRMVQSKKDIESPEIVVQATVL 312
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: Ribokinase (55)
(-)
Family: PfkB (39)
(-)
Ovis aries (Sheep) (7)
1aPfkB-1rfuH01H:2-284
1bPfkB-1rfuH02H:2-284
1cPfkB-1rfuH03H:2-284
1dPfkB-1rfuH04H:2-284
1ePfkB-1rfuH05H:2-284
1fPfkB-1rfuH06H:2-284
1gPfkB-1rfuH07H:2-284
1hPfkB-1rfuH08H:2-284

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (PDXK_SHEEP | P82197)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0008478    pyridoxal kinase activity    Catalysis of the reaction: ATP + pyridoxal = ADP + pyridoxal 5'-phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0009443    pyridoxal 5'-phosphate salvage    Any process that generates pyridoxal 5'-phosphate, the active form of vitamin B6, from derivatives of it without de novo synthesis.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PDXK_SHEEP | P82197: 1lhp 1lhr 1rft 1rfv 1ygj 1ygk 1yhj

(-) Related Entries Specified in the PDB File

1lhp THE SAME PROTEIN WITHOUT LIGAND BINDING
1lhr THE SAME PROTEIN COMPLEXED WITH ATP
1rft THE SAME PROTEIN COMPLEXED WITH AMP-PCP AND PYRIDOXAMINE
1rfv THE SAME PROTEIN COMPLEXED WITH ADP