1RER - JenaLib

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE HOMOTRIMER OF FUSION GLYCOPROTEIN E1 FROM SEMLIKI FOREST VIRUS.

Authors :   D. L. Gibbons, M. C. Vaney, A. Roussel, A. Vigouroux, B. Reilly, M. Kieli F. A. Rey

Date :   07 Nov 03 (Deposition) - 27 Jan 04 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.20

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B,C  (1x)
Biol. Unit 2: A,B,C  (2x)

Keywords :   Envelope Glycoprotein, Membrane Fusion, Virus. , Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. L. Gibbons, M. C. Vaney, A. Roussel, A. Vigouroux, B. Reilly, J. Lepault, M. Kielian, F. A. Rey
Conformational Change And Protein-Protein Interactions Of The Fusion Protein Of Semliki Forest Virus.
Nature V. 427 320 2004
PubMed-ID: 14737160 | Reference-DOI: 10.1038/NATURE02239
(for further references see the PDB file header)

Molecule 1 - STRUCTURAL POLYPROTEIN
	Chains	:	A, B, C
	Fragment	:	SPIKE GLYCOPROTEIN E1
	Organism Scientific	:	SEMLIKI FOREST VIRUS
	Organism Taxid	:	11033
	Other Details	:	CONTAINS: COAT PROTEIN C (EC 3.4.21.-) (CAPSID PROTEIN C); SPIKE GLYCOPROTEIN E3; SPIKE GLYCOPROTEIN E2; SPIKE GLYCOPROTEIN E1

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A	B	C
Biological Unit 2 (2x)	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (9, 23)

No.	Name	Count	Type	Full Name
1	BMA	3	Ligand/Ion	BETA-D-MANNOSE
2	BR	3	Ligand/Ion	BROMIDE ION
3	FUC	1	Ligand/Ion	ALPHA-L-FUCOSE
4	FUL	1	Ligand/Ion	BETA-L-FUCOSE
5	HO	4	Ligand/Ion	HOLMIUM ATOM
6	MAN	2	Ligand/Ion	ALPHA-D-MANNOSE
7	NAG	7	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
8	NDG	1	Ligand/Ion	2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
9	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (7, 16)

No.	Name	Count	Type	Full Name
1	BMA	3	Ligand/Ion	BETA-D-MANNOSE
2	BR	-1	Ligand/Ion	BROMIDE ION
3	FUC	1	Ligand/Ion	ALPHA-L-FUCOSE
4	FUL	1	Ligand/Ion	BETA-L-FUCOSE
5	HO	-1	Ligand/Ion	HOLMIUM ATOM
6	MAN	2	Ligand/Ion	ALPHA-D-MANNOSE
7	NAG	7	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
8	NDG	1	Ligand/Ion	2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
9	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (7, 32)

No.	Name	Count	Type	Full Name
1	BMA	6	Ligand/Ion	BETA-D-MANNOSE
2	BR	-1	Ligand/Ion	BROMIDE ION
3	FUC	2	Ligand/Ion	ALPHA-L-FUCOSE
4	FUL	2	Ligand/Ion	BETA-L-FUCOSE
5	HO	-1	Ligand/Ion	HOLMIUM ATOM
6	MAN	4	Ligand/Ion	ALPHA-D-MANNOSE
7	NAG	14	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
8	NDG	2	Ligand/Ion	2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
9	PO4	2	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (21, 21)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	MET A:136 , ASN A:141 , FUL A:402 , NAG A:403 , ARG B:134 , ASN B:141 , THR B:143 , NDG B:401 , FUC B:402	BINDING SITE FOR RESIDUE NAG A 401
02	AC2	SOFTWARE	GLN A:32 , MET A:136 , NAG A:401 , NAG B:403 , BMA B:404	BINDING SITE FOR RESIDUE FUL A 402
03	AC3	SOFTWARE	NAG A:401 , BMA A:404 , NAG A:409 , FUC B:402	BINDING SITE FOR RESIDUE NAG A 403
04	AC4	SOFTWARE	NAG A:403 , BMA A:408 , NAG A:409	BINDING SITE FOR RESIDUE BMA A 404
05	AC5	SOFTWARE	BMA A:404 , NAG A:409 , BMA B:404	BINDING SITE FOR RESIDUE BMA A 408
06	AC6	SOFTWARE	NAG A:403 , BMA A:404 , BMA A:408	BINDING SITE FOR RESIDUE NAG A 409
07	AC7	SOFTWARE	ARG A:134 , THR A:143 , NAG A:401 , ARG B:134 , MET B:136 , ASN B:141 , FUC B:402 , NAG B:403	BINDING SITE FOR RESIDUE NDG B 401
08	AC8	SOFTWARE	ARG A:134 , NAG A:401 , NAG A:403 , ARG B:134 , NDG B:401 , NAG B:403 , HOH B:440	BINDING SITE FOR RESIDUE FUC B 402
09	AC9	SOFTWARE	ARG A:134 , FUL A:402 , NDG B:401 , FUC B:402 , BMA B:404	BINDING SITE FOR RESIDUE NAG B 403
10	BC1	SOFTWARE	FUL A:402 , BMA A:408 , NAG B:403 , MAN B:405 , MAN B:408	BINDING SITE FOR RESIDUE BMA B 404
11	BC2	SOFTWARE	BMA B:404	BINDING SITE FOR RESIDUE MAN B 405
12	BC3	SOFTWARE	BMA B:404 , NAG B:409	BINDING SITE FOR RESIDUE MAN B 408
13	BC4	SOFTWARE	LYS A:345 , MAN B:408	BINDING SITE FOR RESIDUE NAG B 409
14	BC5	SOFTWARE	MET C:136 , ASN C:141 , NAG C:403	BINDING SITE FOR RESIDUE NAG C 401
15	BC6	SOFTWARE	NAG C:401	BINDING SITE FOR RESIDUE NAG C 403
16	BC7	SOFTWARE	SER A:168 , SER B:168 , ALA B:169 , SER C:168 , ALA C:169	BINDING SITE FOR RESIDUE PO4 B 415
17	BC8	SOFTWARE	PRO A:191	BINDING SITE FOR RESIDUE BR A 417
18	BC9	SOFTWARE	ASP A:188 , ASP B:188 , ASP C:188 , HOH C:455	BINDING SITE FOR RESIDUE HO A 411
19	CC1	SOFTWARE	TYR A:390 , ALA A:391 , GLU C:72	BINDING SITE FOR RESIDUE HO A 412
20	CC2	SOFTWARE	GLU A:72 , TYR B:390 , ALA B:391	BINDING SITE FOR RESIDUE HO B 413
21	CC3	SOFTWARE	GLU B:72 , TYR C:390 , ALA C:391	BINDING SITE FOR RESIDUE HO C 414

Asymmetric Unit

No.	Residues
1	A:49	-	A:114
2	A:62	-	A:94
3	A:63	-	A:96
4	A:68	-	A:78
5	A:259	-	A:271
6	A:301	-	A:376
7	A:306	-	A:380
8	A:328	-	A:370
9	B:49	-	B:114
10	B:62	-	B:94
11	B:63	-	B:96
12	B:68	-	B:78
13	B:259	-	B:271
14	B:301	-	B:376
15	B:306	-	B:380
16	B:328	-	B:370
17	C:49	-	C:114
18	C:62	-	C:94
19	C:63	-	C:96
20	C:68	-	C:78
21	C:259	-	C:271
22	C:301	-	C:376
23	C:306	-	C:380
24	C:328	-	C:370

(no "Cis Peptide Bond" information available for 1RER)

Asymmetric Unit (8, 24)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_POLS_SFV_014 *	A	880	S	POLS_SFV	---	---	A/B/C	A	65	S
2	UniProt	VAR_POLS_SFV_015 *	R	930	K	POLS_SFV	---	---	A/B/C	R	115	K
3	UniProt	VAR_POLS_SFV_016 *	M	1043	T	POLS_SFV	---	---	A/B/C	M	228	T
4	UniProt	VAR_POLS_SFV_017 *	I	1112	T	POLS_SFV	---	---	A/B/C	I	297	T
5	UniProt	VAR_POLS_SFV_018 *	T	1134	K	POLS_SFV	---	---	A/B/C	T	319	K
6	UniProt	VAR_POLS_SFV_019 *	N	1138	D	POLS_SFV	---	---	A/B/C	N	323	D
7	UniProt	VAR_POLS_SFV_020 *	G	1165	R	POLS_SFV	---	---	A/B/C	G	350	R
8	UniProt	VAR_POLS_SFV_021 *	R	1188	K	POLS_SFV	---	---	A/B/C	R	373	K
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (8, 24)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_POLS_SFV_014 *	A	880	S	POLS_SFV	---	---	A/B/C	A	65	S
2	UniProt	VAR_POLS_SFV_015 *	R	930	K	POLS_SFV	---	---	A/B/C	R	115	K
3	UniProt	VAR_POLS_SFV_016 *	M	1043	T	POLS_SFV	---	---	A/B/C	M	228	T
4	UniProt	VAR_POLS_SFV_017 *	I	1112	T	POLS_SFV	---	---	A/B/C	I	297	T
5	UniProt	VAR_POLS_SFV_018 *	T	1134	K	POLS_SFV	---	---	A/B/C	T	319	K
6	UniProt	VAR_POLS_SFV_019 *	N	1138	D	POLS_SFV	---	---	A/B/C	N	323	D
7	UniProt	VAR_POLS_SFV_020 *	G	1165	R	POLS_SFV	---	---	A/B/C	G	350	R
8	UniProt	VAR_POLS_SFV_021 *	R	1188	K	POLS_SFV	---	---	A/B/C	R	373	K
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (8, 48)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_POLS_SFV_014 *	A	880	S	POLS_SFV	---	---	A/B/C	A	65	S
2	UniProt	VAR_POLS_SFV_015 *	R	930	K	POLS_SFV	---	---	A/B/C	R	115	K
3	UniProt	VAR_POLS_SFV_016 *	M	1043	T	POLS_SFV	---	---	A/B/C	M	228	T
4	UniProt	VAR_POLS_SFV_017 *	I	1112	T	POLS_SFV	---	---	A/B/C	I	297	T
5	UniProt	VAR_POLS_SFV_018 *	T	1134	K	POLS_SFV	---	---	A/B/C	T	319	K
6	UniProt	VAR_POLS_SFV_019 *	N	1138	D	POLS_SFV	---	---	A/B/C	N	323	D
7	UniProt	VAR_POLS_SFV_020 *	G	1165	R	POLS_SFV	---	---	A/B/C	G	350	R
8	UniProt	VAR_POLS_SFV_021 *	R	1188	K	POLS_SFV	---	---	A/B/C	R	373	K
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 1RER)

(no "Exon" information available for 1RER)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:391
 aligned with POLS_SFV | P03315 from UniProtKB/Swiss-Prot  Length:1253

    Alignment length:391
                                   825       835       845       855       865       875       885       895       905       915       925       935       945       955       965       975       985       995      1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175      1185      1195      1205 
            POLS_SFV    816 YEHSTVMPNVVGFPYKAHIERPGYSPLTLQMQVVETSLEPTLNLEYITCEYKTVVPSPYVKCCGASECSTKEKPDYQCKVYTGVYPFMWGGAYCFCDSENTQLSEAYVDRSDVCRHDHASAYKAHTASLKAKVRVMYGNVNQTVDVYVNGDHAVTIGGTQFIFGPLSSAWTPFDNKIVVYKDEVFNQDFPPYGSGQPGRFGDIQSRTVESNDLYANTALKLARPSPGMVHVPYTQTPSGFKYWLKEKGTALNTKAPFGCQIKTNPVRAMNCAVGNIPVSMNLPDSAFTRIVEAPTIIDLTCTVATCTHSSDFGGVLTLTYKTNKNGDCSVHSHSNVATLQEATAKVKTAGKVTLHFSTASASPSFVVSLCSARATCSASCEPPKDHIVPYA 1206
               SCOP domains d1rera2 A:1-292 Fusion glycoprotein E1                                                                                                                                                                                                                                                              d1rera1 A:293-391 Fusion glycoprotein E1                                                            SCOP domains
               CATH domains 1rerA01 A:1-42,A:124-173,A:257-290        ---------------------------------------------------------------------------------1rerA01 A:1-42,A:124-173,A:257-290                -----------------------------------------------------------------------------------1rerA01 A:1-42,A:124-173,A:257-290----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee......eeeee.......eeeeeeeeeeeeee.....eee..eeee....ee................eeeeee..................eeeeeeeeee..hhhhh.eeee...eeeeeeeeeeee..eeeeeee......eeee..eeee..............eee....ee.....hhhhh.......ee.........ee....ee...........ee...hhhhhhhhhh..hhhhh.....eee....eee.....eeeeee........ee.....eeeeeeeeeee.......eeeeeeeee...eeeeeee.....ee...eeee....eeeeeee......eeeeee..eeeeee.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------S-------------------------------------------------K----------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------T---------------------K---D--------------------------R----------------------K------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1rer A    1 YEHSTVMPNVVGFPYKAHIERPGYSPLTLQMQVVETSLEPTLNLEYITCEYKTVVPSPYVKCCGASECSTKEKPDYQCKVYTGVYPFMWGGAYCFCDSENTQLSEAYVDRSDVCRHDHASAYKAHTASLKAKVRVMYGNVNQTVDVYVNGDHAVTIGGTQFIFGPLSSAWTPFDNKIVVYKDEVFNQDFPPYGSGQPGRFGDIQSRTVESNDLYANTALKLARPSPGMVHVPYTQTPSGFKYWLKEKGTALNTKAPFGCQIKTNPVRAMNCAVGNIPVSMNLPDSAFTRIVEAPTIIDLTCTVATCTHSSDFGGVLTLTYKTNKNGDCSVHSHSNVATLQEATAKVKTAGKVTLHFSTASASPSFVVSLCSARATCSASCEPPKDHIVPYA  391
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390

Chain B from PDB  Type:PROTEIN  Length:391
 aligned with POLS_SFV | P03315 from UniProtKB/Swiss-Prot  Length:1253

    Alignment length:391
                                   825       835       845       855       865       875       885       895       905       915       925       935       945       955       965       975       985       995      1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175      1185      1195      1205 
            POLS_SFV    816 YEHSTVMPNVVGFPYKAHIERPGYSPLTLQMQVVETSLEPTLNLEYITCEYKTVVPSPYVKCCGASECSTKEKPDYQCKVYTGVYPFMWGGAYCFCDSENTQLSEAYVDRSDVCRHDHASAYKAHTASLKAKVRVMYGNVNQTVDVYVNGDHAVTIGGTQFIFGPLSSAWTPFDNKIVVYKDEVFNQDFPPYGSGQPGRFGDIQSRTVESNDLYANTALKLARPSPGMVHVPYTQTPSGFKYWLKEKGTALNTKAPFGCQIKTNPVRAMNCAVGNIPVSMNLPDSAFTRIVEAPTIIDLTCTVATCTHSSDFGGVLTLTYKTNKNGDCSVHSHSNVATLQEATAKVKTAGKVTLHFSTASASPSFVVSLCSARATCSASCEPPKDHIVPYA 1206
               SCOP domains d1rerb2 B:1-292 Fusion glycoprotein E1                                                                                                                                                                                                                                                              d1rerb1 B:293-391 Fusion glycoprotein E1                                                            SCOP domains
               CATH domains 1rerB01 B:1-42,B:124-173,B:257-290        ---------------------------------------------------------------------------------1rerB01 B:1-42,B:124-173,B:257-290                -----------------------------------------------------------------------------------1rerB01 B:1-42,B:124-173,B:257-290----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee......eeeee.......eeeeeeeeeeeeee.....eee..eeee....eee...............eeeee...................eeeeeeeeee..hhhhh.eeee...eeeeeeeeeeee..eeeeeeee.....eeee..eeee..............eee....ee.....hhhhh.......ee.........ee....ee...........ee...hhhhhhhhhh..hhhhh.....eee....eee.....eeeeee........ee.....eeeeeeeeeee.......eeeeeeeee...eeeeeee.....ee...eeee....eeeeeee......eeeeee..eeeeee.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------S-------------------------------------------------K----------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------T---------------------K---D--------------------------R----------------------K------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1rer B    1 YEHSTVMPNVVGFPYKAHIERPGYSPLTLQMQVVETSLEPTLNLEYITCEYKTVVPSPYVKCCGASECSTKEKPDYQCKVYTGVYPFMWGGAYCFCDSENTQLSEAYVDRSDVCRHDHASAYKAHTASLKAKVRVMYGNVNQTVDVYVNGDHAVTIGGTQFIFGPLSSAWTPFDNKIVVYKDEVFNQDFPPYGSGQPGRFGDIQSRTVESNDLYANTALKLARPSPGMVHVPYTQTPSGFKYWLKEKGTALNTKAPFGCQIKTNPVRAMNCAVGNIPVSMNLPDSAFTRIVEAPTIIDLTCTVATCTHSSDFGGVLTLTYKTNKNGDCSVHSHSNVATLQEATAKVKTAGKVTLHFSTASASPSFVVSLCSARATCSASCEPPKDHIVPYA  391
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390

Chain C from PDB  Type:PROTEIN  Length:391
 aligned with POLS_SFV | P03315 from UniProtKB/Swiss-Prot  Length:1253

    Alignment length:391
                                   825       835       845       855       865       875       885       895       905       915       925       935       945       955       965       975       985       995      1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175      1185      1195      1205 
            POLS_SFV    816 YEHSTVMPNVVGFPYKAHIERPGYSPLTLQMQVVETSLEPTLNLEYITCEYKTVVPSPYVKCCGASECSTKEKPDYQCKVYTGVYPFMWGGAYCFCDSENTQLSEAYVDRSDVCRHDHASAYKAHTASLKAKVRVMYGNVNQTVDVYVNGDHAVTIGGTQFIFGPLSSAWTPFDNKIVVYKDEVFNQDFPPYGSGQPGRFGDIQSRTVESNDLYANTALKLARPSPGMVHVPYTQTPSGFKYWLKEKGTALNTKAPFGCQIKTNPVRAMNCAVGNIPVSMNLPDSAFTRIVEAPTIIDLTCTVATCTHSSDFGGVLTLTYKTNKNGDCSVHSHSNVATLQEATAKVKTAGKVTLHFSTASASPSFVVSLCSARATCSASCEPPKDHIVPYA 1206
               SCOP domains d1rerc2 C:1-292 Fusion glycoprotein E1                                                                                                                                                                                                                                                              d1rerc1 C:293-391 Fusion glycoprotein E1                                                            SCOP domains
               CATH domains 1rerC01 C:1-42,C:124-173,C:257-290        ---------------------------------------------------------------------------------1rerC01 C:1-42,C:124-173,C:257-290                -----------------------------------------------------------------------------------1rerC01 C:1-42,C:124-173,C:257-290----------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Alpha_E1_glycop-1rerC01 C:1-391                                                                                                                                                                                                                                                                                                                                                                         Pfam domains (1)
           Pfam domains (2) Alpha_E1_glycop-1rerC02 C:1-391                                                                                                                                                                                                                                                                                                                                                                         Pfam domains (2)
           Pfam domains (3) Alpha_E1_glycop-1rerC03 C:1-391                                                                                                                                                                                                                                                                                                                                                                         Pfam domains (3)
         Sec.struct. author ..eeeeee......eeeee.......eeeeeeeeeeeeee.....eee..eeee....ee................eeeee....................eeeeeeeee..hhhhh.eeee...eeeeeeeeeeee..eeeeeee......eeee..eeee..............eee....ee.....hhhhh.......ee.........ee....ee...........ee...hhhhhhhhhh..hhhhh.....eee....eee.....eeeeee........ee.....eeeeeeeeeee.......eeeeeeeee...eeeeeee.....ee...eeee....eeeeeee......eeeeee..eeeeee.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------S-------------------------------------------------K----------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------T---------------------K---D--------------------------R----------------------K------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1rer C    1 YEHSTVMPNVVGFPYKAHIERPGYSPLTLQMQVVETSLEPTLNLEYITCEYKTVVPSPYVKCCGASECSTKEKPDYQCKVYTGVYPFMWGGAYCFCDSENTQLSEAYVDRSDVCRHDHASAYKAHTASLKAKVRVMYGNVNQTVDVYVNGDHAVTIGGTQFIFGPLSSAWTPFDNKIVVYKDEVFNQDFPPYGSGQPGRFGDIQSRTVESNDLYANTALKLARPSPGMVHVPYTQTPSGFKYWLKEKGTALNTKAPFGCQIKTNPVRAMNCAVGNIPVSMNLPDSAFTRIVEAPTIIDLTCTVATCTHSSDFGGVLTLTYKTNKNGDCSVHSHSNVATLQEATAKVKTAGKVTLHFSTASASPSFVVSLCSARATCSASCEPPKDHIVPYA  391
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Tick-borne Encephalitis virus Glycoprotein; domain 1 (14)

Homologous Superfamily: Tick-borne Encephalitis virus Glycoprotein, domain 1 (14)

Semliki forest virus. Organism_taxid: 11033 (2)

1a	1rerA01	A:1-42,A:124-173,A:257-290
1b	1rerB01	B:1-42,B:124-173,B:257-290
1c	1rerC01	C:1-42,C:124-173,C:257-290

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Alpha_E1_glycop] (11)

Family: Alpha_E1_glycop (11)

Semliki forest virus (SFV) (1)

1a	Alpha_E1_glycop-1rerC01	C:1-391
1b	Alpha_E1_glycop-1rerC02	C:1-391
1c	Alpha_E1_glycop-1rerC03	C:1-391

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (POLS_SFV | P03315)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0046983	protein dimerization activity	The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008236	serine-type peptidase activity	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0005198	structural molecule activity	The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
	GO:0075512	clathrin-dependent endocytosis of virus by host cell	Any clathrin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicle containing the virus.
	GO:0075509	endocytosis involved in viral entry into host cell	Any endocytosis that is involved in the uptake of a virus into a host cell.
	GO:0039654	fusion of virus membrane with host endosome membrane	Fusion of a virus membrane with a host endosome membrane. Occurs after internalization of the virus through the endosomal pathway, and results in release of the virus contents into the cell.
	GO:0039663	membrane fusion involved in viral entry into host cell	Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0046718	viral entry into host cell	The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
	GO:0019068	virion assembly	A late phase of the viral life cycle during which all the components necessary for the formation of a mature virion collect at a particular site in the cell and the basic structure of the virus particle is formed.
	GO:0019062	virion attachment to host cell	The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
	GO:0039619	T=4 icosahedral viral capsid	The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=4 symmetry. The T=4 capsid is composed of 12 pentameric and 30 hexameric capsomeres.
	GO:0030430	host cell cytoplasm	The cytoplasm of a host cell.
	GO:0044174	host cell endosome	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to host cell lysosomes for degradation.
	GO:0033644	host cell membrane	Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0020002	host cell plasma membrane	The plasma membrane surrounding a host cell.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0019028	viral capsid	The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
	GO:0019031	viral envelope	The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
	GO:0019012	virion	The complete fully infectious extracellular virus particle.
	GO:0055036	virion membrane	The lipid bilayer surrounding a virion.

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	POLS_SFV \| P03315	:	1dyl 1i9w 1vcp 1vcq 2ala 2v33

1i9w	MONOMER OF FUSION GLYCOPROTEIN E1 FROM SEMLIKI FOREST VIRUS.

Description

Compounds

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Chains, Units

Ligands, Modified Residues, Ions (9, 23)

Sites (21, 21)

SS Bonds (24, 24)

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