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(-) Description

Title :  CRYSTAL STRUCTURE OF CYTOCHROME P450-CAM WITH A FLUORESCENT PROBE D-8-AD (ADAMANTANE-1-CARBOXYLIC ACID-5-DIMETHYLAMINO-NAPHTHALENE-1-SULFONYLAMINO-OCTYL-AMIDE)
 
Authors :  A. -M. A. Hays, A. R. Dunn, H. B. Gray, C. D. Stout, D. B. Goodin
Date :  06 Nov 03  (Deposition) - 16 Nov 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym./Biol. Unit :  A
Keywords :  Monooxygenase, Conformational States, Substrate-Linked Sensitizers, Substrate-Binding, Dansyl, Adamantane, Adamantane-1-Carboxylic Acid, 4-(5-Dimethylamino- Naphthalene-1-Sulfonylamino)-Octyl]-Amide, Channel, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. M. Hays, A. R. Dunn, R. Chiu, H. B. Gray, C. D. Stout, D. B. Goodin
Conformational States Of Cytochrome P450Cam Revealed By Trapping Of Synthetic Molecular Wires.
J. Mol. Biol. V. 344 455 2004
PubMed-ID: 15522298  |  Reference-DOI: 10.1016/J.JMB.2004.09.046
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CYTOCHROME P450-CAM
    ChainsA
    EC Number1.14.15.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPUS200
    Expression System StrainTBY
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneCAMC, CYP101
    Organism ScientificPSEUDOMONAS PUTIDA
    Organism Taxid303
    SynonymCAMPHOR 5-MONOOXYGENASE, P450CAM

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric/Biological Unit (4, 6)
No.NameCountTypeFull Name
1DSO1Ligand/IonADAMANTANE-1-CARBOXYLIC ACID-5-DIMETHYLAMINO-NAPHTHALENE-1-SULFONYLAMINO-OCTYL-AMIDE
2EDO3Ligand/Ion1,2-ETHANEDIOL
3HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
4K1Ligand/IonPOTASSIUM ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:74 , GLY A:83 , GLU A:84 , TYR A:86 , HOH A:942BINDING SITE FOR RESIDUE K A 801
2AC2SOFTWAREPRO A:90 , THR A:91 , GLN A:98 , ARG A:102 , LEU A:234 , LEU A:235 , GLY A:238 , GLY A:239 , THR A:242 , ASP A:287 , ARG A:289 , GLN A:312 , THR A:339 , PHE A:340 , GLY A:341 , HIS A:345 , CYS A:347 , GLY A:349 , DSO A:601 , HOH A:807 , HOH A:817BINDING SITE FOR RESIDUE HEM A 501
3AC3SOFTWARETYR A:19 , PHE A:77 , PRO A:79 , TYR A:86 , PRO A:177 , PHE A:183 , VAL A:237 , ILE A:385 , HEM A:501 , HOH A:979BINDING SITE FOR RESIDUE DSO A 601
4AC4SOFTWAREGLU A:319 , ARG A:320 , GLU A:363 , ARG A:367 , HOH A:887 , HOH A:1071BINDING SITE FOR RESIDUE EDO A 701
5AC5SOFTWARELEU A:264 , PRO A:268 , LYS A:362 , THR A:366 , HOH A:858 , HOH A:968BINDING SITE FOR RESIDUE EDO A 702
6AC6SOFTWAREVAL A:335 , SER A:336 , HIS A:337 , HOH A:1024BINDING SITE FOR RESIDUE EDO A 704

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1RE9)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Ile A:78 -Pro A:79
2Ile A:89 -Pro A:90
3Pro A:95 -Pro A:96

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1RE9)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CYTOCHROME_P450PS00086 Cytochrome P450 cysteine heme-iron ligand signature.CPXA_PSEPU351-360  1A:340-349

(-) Exons   (0, 0)

(no "Exon" information available for 1RE9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:404
 aligned with CPXA_PSEPU | P00183 from UniProtKB/Swiss-Prot  Length:415

    Alignment length:404
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411    
           CPXA_PSEPU    12 LAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRHFSSECPFIPREAGEAYDFIPTSMDPPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFMLLAGLPEEDIPHLKYLTDQMTRPDGSMTFAEAKEALYDYLIPIIEQRRQKPGTDAISIVANGQVNGRPITSDEAKRMCGLLLVGGLDTVVNFLSFSMEFLAKSPEHRQELIERPERIPAACEELLRRFSLVADGRILTSDYEFHGVQLKKGDQILLPQMLSGLDERENACPMHVDFSRQKVSHTTFGHGSHLCLGQHLARREIIVTLKEWLTRIPDFSIAPGAQIQHKSGIVSGVQALPLVWDPATTKAV 415
               SCOP domains d1re9a_ A: Cytochrome P450-CAM                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1re9A00 A:1-404 Cytochrome p450                                                                                                                                                                                                                                                                                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------p450-1re9A01 A:164-383                                                                                                                                                                                                      --------------------- Pfam domains
         Sec.struct. author ........hhhhh.........hhhhhhhhhhhhhhh.....eeeehhhhheeee.hhhhhhhhhhh...ee......hhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeehhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh.ee..ee.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.....eeee...eee..eee....eee.hhhhhhhh.......................hhhhh..hhhhhhhhhhhhhhhhhhhh...ee.......ee.....ee...eee.hhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOCHROME------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1re9 A   1 LAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRHFSSECPFIPREAGEAYDFIPTSMDPPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFMLLAGLPEEDIPHLKYLTDQMTRPDGSMTFAEAKEALYDYLIPIIEQRRQKPGTDAISIVANGQVNGRPITSDEAKRMCGLLLVGGLDTVVNFLSFSMEFLAKSPEHRQELIERPERIPAACEELLRRFSLVADGRILTSDYEFHGVQLKKGDQILLPQMLSGLDERENACPMHVDFSRQKVSHTTFGHGSHLCLGQHLARREIIVTLKEWLTRIPDFSIAPGAQIQHKSGIVSGVQALPLVWDPATTKAV 404
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (CPXA_PSEPU | P00183)
molecular function
    GO:0018683    camphor 5-monooxygenase activity    Catalysis of the reaction: (+)-camphor + putidaredoxin + O2 = (+)-exo-5-hydroxycamphor + oxidized putidaredoxin + H2O.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004497    monooxygenase activity    Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016705    oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen    Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
biological process
    GO:0019383    (+)-camphor catabolic process    The chemical reactions and pathways resulting in the breakdown of (+)-camphor, a bicyclic monoterpene ketone.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CPXA_PSEPU | P001831akd 1c8j 1cp4 1dz4 1dz6 1dz8 1dz9 1geb 1gek 1gem 1gjm 1iwi 1iwj 1iwk 1j51 1k2o 1lwl 1mpw 1noo 1o76 1p2y 1p7r 1pha 1phb 1phc 1phd 1phe 1phf 1phg 1qmq 1rf9 1t85 1t86 1t87 1t88 1uyu 1yrc 1yrd 2a1m 2a1n 2a1o 2cp4 2cpp 2fe6 2fer 2feu 2frz 2gqx 2gr6 2h7q 2h7r 2h7s 2l8m 2lqd 2m56 2qbl 2qbm 2qbn 2qbo 2z97 2zaw 2zax 2zuh 2zui 2zuj 2zwt 2zwu 3cp4 3cpp 3fwf 3fwg 3fwi 3fwj 3l61 3l62 3l63 3oia 3ol5 3p6m 3p6n 3p6o 3p6p 3p6q 3p6r 3p6s 3p6t 3p6u 3p6v 3p6w 3p6x 3w9c 3wrh 3wri 3wrj 3wrk 3wrl 3wrm 4cp4 4cpp 4ek1 4g3r 4jws 4jwu 4jx1 4kky 4l49 4l4a 4l4b 4l4c 4l4d 4l4e 4l4f 4l4g 5cp4 5cpp 5gxg 5ik1 6cp4 6cpp 7cpp 8cpp

(-) Related Entries Specified in the PDB File

1lwl 2.2 ANGSTROM STRUCTURE OF D-8-AD BOUND TO P450CAM