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(-) Description

Title :  2.0 A CRYSTAL STRUCTURE OF A PHAGE PROTEIN FROM BACILLUS CEREUS ATCC 14579
 
Authors :  R. Zhang, G. Joachimiak, F. Collart, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date :  21 Oct 03  (Deposition) - 06 Jul 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Phage Protein, Two Layers Alpha-Beta Sandwich, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Zhang, G. Joachimiak, S. Jiang, A. Cipriani, F. Collart, A. Joachimiak
Structure Of Phage Protein Bc1872 From Bacillus Cereus, A Singleton With New Fold
Proteins V. 64 280 2006
PubMed-ID: 16596646  |  Reference-DOI: 10.1002/PROT.20910
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PHAGE PROTEIN
    Atcc: 14579
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PDM68
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: BACILLUS CEREUS
    Organism Taxid: 1396

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1R7L)

(-) Sites  (0, 0)

(no "Site" information available for 1R7L)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1R7L)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Lys A:63 -Pro A:64
2Lys B:63 -Pro B:64

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1R7L)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1R7L)

(-) Exons   (0, 0)

(no "Exon" information available for 1R7L)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:103
 aligned with Q81EU2_BACCR | Q81EU2 from UniProtKB/TrEMBL  Length:102

    Alignment length:103
                                   1                                                                                               
                                   | 3        13        23        33        43        53        63        73        83        93   
         Q81EU2_BACCR     - -------MKPRDINKLIASKIFGYEIKDDNIIKDGRYRLGIPLYSQNIESAWQVVEKLEYDVKVTKTDLKPKYQVHVFVPGGVKMVFAETAPMAICKGALASV  96
               SCOP domains d1r7la_ A: Bacillus phage protein                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhh....ee..eeeehhheee.......hhhhhhhhhhhh..eeeeee......eeeeee.....eeeee.hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 1r7l A  -6 LYFQSNAMKPRDINKLIASKIFGYEIKDDNIIKDGRYRLGIPLYSQNIESAWQVVEKLEYDVKVTKTDLKPKYQVHVFVPGGVKMVFAETAPMAICKGALASV  96
                                     3        13        23        33        43        53        63        73        83        93   


Chain B from PDB  Type:PROTEIN  Length:109
 aligned with Q81EU2_BACCR | Q81EU2 from UniProtKB/TrEMBL  Length:102

    Alignment length:109
                                    1                                                                                                    
                                    |2        12        22        32        42        52        62        72        82        92         
         Q81EU2_BACCR     - --------MKPRDINKLIASKIFGYEIKDDNIIKDGRYRLGIPLYSQNIESAWQVVEKLEYDVKVTKTDLKPKYQVHVFVPGGVKMVFAETAPMAICKGALASVDIELQ 101
               SCOP domains d1r7lb_ B: Bacillus phage protein                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhh........eeeehhheeee......hhhhhhhhhhhh..eeeeee......eeeeee.....eeeee.hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 1r7l B  -7 NLYFQSNAMKPRDINKLIASKIFGYEIKDDNIIKDGRYRLGIPLYSQNIESAWQVVEKLEYDVKVTKTDLKPKYQVHVFVPGGVKMVFAETAPMAICKGALASVDIELQ 101
                                     2        12        22        32        42        52        62        72        82        92
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1R7L)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1R7L)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1R7L)

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  Cis Peptide Bonds
    Lys A:63 - Pro A:64   [ RasMol ]  
    Lys B:63 - Pro B:64   [ RasMol ]  
 

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  1r7l
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