Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym.Unit - manually
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asym.Unit - manually
Asym.Unit - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE ANALYSIS OF CLPB
 
Authors :  S. Lee, M. E. Sowa, Y. Watanabe, P. B. Sigler, W. Chiu, M. Yoshida, F. T. F. Tsai
Date :  28 Aug 03  (Deposition) - 21 Oct 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  A (1x),B (1x),C (1x)
Keywords :  Coiled Coil, Aaa Atpase, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Lee, M. E. Sowa, Y. Watanabe, P. B. Sigler, W. Chiu, M. Yoshida, F. T. F. Tsai
The Structure Of Clpb: A Molecular Chaperone That Rescues Proteins From An Aggregated State
Cell(Cambridge, Mass. ) V. 115 229 2003
PubMed-ID: 14567920  |  Reference-DOI: 10.1016/S0092-8674(03)00807-9
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CLPB PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CLPB
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 274

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): ABC
Biological Unit 2 (1x): A (1x)B (1x)C (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 29)

Asymmetric Unit (2, 29)
No.NameCountTypeFull Name
1ANP6Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2PT23Ligand/IonPLATINUM (II) ION
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1ANP6Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2PT-1Ligand/IonPLATINUM (II) ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ANP-1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2PT-1Ligand/IonPLATINUM (II) ION

(-) Sites  (26, 26)

Asymmetric Unit (26, 26)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREMET B:24BINDING SITE FOR RESIDUE PT B 855
02AC2SOFTWARELYS B:606 , MET B:619BINDING SITE FOR RESIDUE PT B 856
03AC3SOFTWARELYS C:606 , MET C:619BINDING SITE FOR RESIDUE PT C 855
04AC4SOFTWARELYS A:606 , MET A:619BINDING SITE FOR RESIDUE PT A 855
05AC5SOFTWAREMET B:394 , ARG C:180 , PRO C:221BINDING SITE FOR RESIDUE PT B 857
06AC6SOFTWAREMET C:624 , TYR C:627BINDING SITE FOR RESIDUE PT C 856
07AC7SOFTWAREMET A:24 , LYS A:73BINDING SITE FOR RESIDUE PT A 856
08AC8SOFTWAREMET B:394 , ARG C:180BINDING SITE FOR RESIDUE PT B 858
09AC9SOFTWARETHR B:625 , MET B:628BINDING SITE FOR RESIDUE PT B 859
10BC1SOFTWARETHR C:625 , MET C:628BINDING SITE FOR RESIDUE PT C 857
11BC2SOFTWAREMET A:234BINDING SITE FOR RESIDUE PT A 858
12BC3SOFTWARETHR A:625 , MET A:628BINDING SITE FOR RESIDUE PT A 859
13BC4SOFTWAREMET A:394BINDING SITE FOR RESIDUE PT A 860
14BC5SOFTWAREMET C:234 , PHE C:247BINDING SITE FOR RESIDUE PT C 858
15BC6SOFTWAREARG C:391 , MET C:394BINDING SITE FOR RESIDUE PT C 859
16BC7SOFTWAREMET B:624 , TYR B:627BINDING SITE FOR RESIDUE PT B 861
17BC8SOFTWAREMET C:24BINDING SITE FOR RESIDUE PT C 860
18BC9SOFTWAREALA A:390 , ARG A:393 , MET A:394 , GLN B:184BINDING SITE FOR RESIDUE PT A 861
19CC1SOFTWAREMET A:624 , TYR A:627BINDING SITE FOR RESIDUE PT A 862
20CC2SOFTWAREARG A:188 , MET C:394BINDING SITE FOR RESIDUE PT C 861
21CC3SOFTWAREVAL A:172 , ILE A:173 , GLU A:199 , PRO A:200 , GLY A:201 , VAL A:202 , GLY A:203 , LYS A:204 , THR A:205 , ALA A:206 , ASP A:270 , ILE A:340 , LEU A:344 , ILE A:382BINDING SITE FOR RESIDUE ANP A 901
22CC4SOFTWAREARG A:559 , VAL A:560 , VAL A:561 , THR A:597 , GLY A:598 , VAL A:599 , GLY A:600 , LYS A:601 , THR A:602 , GLU A:603 , ILE A:765 , ALA A:805 , ARG A:806BINDING SITE FOR RESIDUE ANP A 911
23CC5SOFTWAREPRO B:171 , VAL B:172 , ILE B:173 , GLU B:199 , PRO B:200 , GLY B:201 , VAL B:202 , GLY B:203 , LYS B:204 , THR B:205 , ALA B:206 , GLU B:271 , ILE B:340 , LEU B:344 , ILE B:382 , PRO C:318 , GLU C:321 , ARG C:322BINDING SITE FOR RESIDUE ANP B 902
24CC6SOFTWAREARG B:559 , VAL B:560 , VAL B:561 , THR B:597 , GLY B:598 , VAL B:599 , GLY B:600 , LYS B:601 , THR B:602 , GLU B:603 , ARG B:621 , ILE B:765 , GLN B:769 , ALA B:805 , ARG B:806BINDING SITE FOR RESIDUE ANP B 912
25CC7SOFTWAREPRO C:171 , VAL C:172 , ILE C:173 , PRO C:200 , GLY C:201 , VAL C:202 , GLY C:203 , LYS C:204 , THR C:205 , ALA C:206 , GLU C:209 , ILE C:340 , LEU C:344 , ILE C:382BINDING SITE FOR RESIDUE ANP C 903
26CC8SOFTWAREARG C:559 , VAL C:560 , VAL C:561 , THR C:597 , GLY C:598 , VAL C:599 , GLY C:600 , LYS C:601 , THR C:602 , GLU C:603 , ILE C:765 , ALA C:805 , ARG C:806BINDING SITE FOR RESIDUE ANP C 913

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1QVR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1QVR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1QVR)

(-) PROSITE Motifs  (2, 6)

Asymmetric Unit (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CLPAB_1PS00870 Chaperonins clpA/B signature 1.CLPB_THET8286-298
 
 		  3A:291-298
B:291-298
C:291-298
2CLPAB_2PS00871 Chaperonins clpA/B signature 2.CLPB_THET8621-639
 
 		  3A:621-636
B:621-636
C:621-636
Biological Unit 1 (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CLPAB_1PS00870 Chaperonins clpA/B signature 1.CLPB_THET8286-298
 
 		  3A:291-298
B:291-298
C:291-298
2CLPAB_2PS00871 Chaperonins clpA/B signature 2.CLPB_THET8621-639
 
 		  3A:621-636
B:621-636
C:621-636
Biological Unit 2 (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CLPAB_1PS00870 Chaperonins clpA/B signature 1.CLPB_THET8286-298
 
 		  3A:291-298
B:291-298
C:291-298
2CLPAB_2PS00871 Chaperonins clpA/B signature 2.CLPB_THET8621-639
 
 		  3A:621-636
B:621-636
C:621-636

(-) Exons   (0, 0)

(no "Exon" information available for 1QVR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:803
 aligned with CLPB_THET8 | Q9RA63 from UniProtKB/Swiss-Prot  Length:854

    Alignment length:847
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       
           CLPB_THET8     4 ERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPKVEGAEVGQYLTSRLSGALNRAEALMEELKDRYVAVDTLVLALAEATPGLPGLEALKGALKELRGGRTVQTEHAESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGPAGLVFAVPA 850
               SCOP domains d1qvra1 A:4-148 N-terminal domain of ClpB (heat shock protein F84.1)                                                                             d1qvra2 A:149-535 ClpB, AAA+ modules                                                                                                                                                                                                                                                                                                                                                               d1qvra3 A:536-850 ClpB, AAA+ modules                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 1qvrA01 A:4-135 Double Clp-N motif                                                                                                  ---------------1qvrA02 A:151-331 P-loop containing nucleotide triphosphate hydrolases                                                                                                               ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1qvrA04 A:545-756 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                              1qvrA05 A:757-850  [code=1.10.8.60, no name defined]                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh...eehhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhhhh....hhhhh..eehhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh....hhhhhhhhhh.................hhhhhheeehhhhhhh........hhhhhhhhhhhhhh......eeee....hhhhhhhhhhhhhhhh.........eeeee..-----------hhhhhhhhhhhhhhh....eeeee..-------------------hhhhhhh....eeeeehhhhhhhhh...........eee...hhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh........eehhhhhhhhhhh...hhhhhh..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.......eeeee......hhhhhhhhhhhhhhhhhh.eeee.......hhhhhhh--------------hhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhh..ee.......ee...eeeeee...hhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh...eeeehhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh......eeeee......eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLPAB_1      ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLPAB_2            ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qvr A   4 ERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPKVEGAEVGQYLTSRLSGALNRAEGLMEELKDRYVAVDTLVLALAEATPGLPGLEALKGALKELRGGRTVQTEHAESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM-----------EFEERLKAVIQEVVQSQGEVILFIDE-------------------LKPALARGELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRL--------------QLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGPAGLVFAVPA 850
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233|        -  |    253       263       | -         -       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633  |      -       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       
                                                                                                                                                                                                                                                                234         246                      271                 291                                                                                                                                                                                                                                                                                                                                                      636            651                                                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:803
 aligned with CLPB_THET8 | Q9RA63 from UniProtKB/Swiss-Prot  Length:854

    Alignment length:847
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       
           CLPB_THET8     4 ERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPKVEGAEVGQYLTSRLSGALNRAEALMEELKDRYVAVDTLVLALAEATPGLPGLEALKGALKELRGGRTVQTEHAESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGPAGLVFAVPA 850
               SCOP domains d1qvrb1 B:4-148 N-terminal domain of ClpB (heat shock protein F84.1)                                                                             d1qvrb2 B:149-535 ClpB, AAA+ modules                                                                                                                                                                                                                                                                                                                                                               d1qvrb3 B:536-850 ClpB, AAA+ modules                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 1qvrB01 B:4-135 Double Clp-N motif                                                                                                  ---------------1qvrB02 B:151-331 P-loop containing nucleotide triphosphate hydrolases                                                                                                               ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1qvrB04 B:545-756 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                              1qvrB05 B:757-850  [code=1.10.8.60, no name defined]                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh...eehhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhhhh....hhhhh..eehhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh....hhhhhhhhhhh................hhhhhheeehhhhhhh........hhhhhhhhhhhh......eeeeee....hhhhhhhhhhhhhhhh.........eeeee..-----------hhhhhhhhhhhhhhh....eeeee..-------------------hhhhhh.....eeeeehhhhhhhhhhhhhhhh.eeeeee...hhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eehhhhhhhhhhh...hhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.......eeeee......hhhhhhhhhhhhhhhhhh.eeee.......hhhhhhh--------------hhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhh..ee.......ee...eeeeee...hhhhhhhhhhh..hhhhhhhhhhhhhh...hhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh...eeeehhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.......eeeeee....eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLPAB_1      ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLPAB_2            ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qvr B   4 ERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPKVEGAEVGQYLTSRLSGALNRAEGLMEELKDRYVAVDTLVLALAEATPGLPGLEALKGALKELRGGRTVQTEHAESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM-----------EFEERLKAVIQEVVQSQGEVILFIDE-------------------LKPALARGELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRL--------------QLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGPAGLVFAVPA 850
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233|        -  |    253       263       | -         -       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633  |      -       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       
                                                                                                                                                                                                                                                                234         246                      271                 291                                                                                                                                                                                                                                                                                                                                                      636            651                                                                                                                                                                                                       


Chain C from PDB  Type:PROTEIN  Length:803
 aligned with CLPB_THET8 | Q9RA63 from UniProtKB/Swiss-Prot  Length:854

    Alignment length:847
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       
           CLPB_THET8     4 ERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPKVEGAEVGQYLTSRLSGALNRAEALMEELKDRYVAVDTLVLALAEATPGLPGLEALKGALKELRGGRTVQTEHAESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGPAGLVFAVPA 850
               SCOP domains d1qvrc1 C:4-148 N-terminal domain of ClpB (heat shock protein F84.1)                                                                             d1qvrc2 C:149-535 ClpB, AAA+ modules                                                                                                                                                                                                                                                                                                                                                               d1qvrc3 C:536-850 ClpB, AAA+ modules                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 1qvrC01 C:4-142 Double Clp-N motif                                                                                                         1qvrC02 C:143-331 P-loop containing nucleotide triphosphate hydrolases                                                                                                                       1qvrC03 C:332-400,C:514-540  [code=1.10.8.60, no name defined]       -----------------------------------------------------------------------------------------------------------------1qvrC03 C:332-400,C:514-5401qvrC05 C:541-756 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                  1qvrC06 C:757-850  [code=1.10.8.60, no name defined]                                           CATH domains
           Pfam domains (1) ------------------------------------------------------------------------------------------Clp_N-1qvrC10 C:94-137                      --------------------------------------------------------AAA-1qvrC01 C:194-329                                                                                                                   ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA_2-1qvrC04 C:586-751                                                                                                                                               -----ClpB_D2-small-1qvrC07 C:757-837                                                  ------------- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------------------Clp_N-1qvrC11 C:94-137                      --------------------------------------------------------AAA-1qvrC02 C:194-329                                                                                                                   ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA_2-1qvrC05 C:586-751                                                                                                                                               -----ClpB_D2-small-1qvrC08 C:757-837                                                  ------------- Pfam domains (2)
           Pfam domains (3) ------------------------------------------------------------------------------------------Clp_N-1qvrC12 C:94-137                      --------------------------------------------------------AAA-1qvrC03 C:194-329                                                                                                                   ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA_2-1qvrC06 C:586-751                                                                                                                                               -----ClpB_D2-small-1qvrC09 C:757-837                                                  ------------- Pfam domains (3)
           Pfam domains (4) ------------------------------------------------------------------------------------------Clp_N-1qvrC13 C:94-137                      ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) ------------------------------------------------------------------------------------------Clp_N-1qvrC14 C:94-137                      ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) ------------------------------------------------------------------------------------------Clp_N-1qvrC15 C:94-137                      ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (6)
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh...eehhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhhhh....hhhhh..eehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh......hhhhhhhhh.................hhhhhheeehhhhhhh........hhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhhh.........eeeee..-----------hhhhhhhhhhhhhhh....eeeee..-------------------.hhhhhh....eeeeehhhhhhhhh.hhhhhh.eeeeee...hhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhh..hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhh.......eehhhhhhhhhhh...hhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.......eeeee......hhhhhhhhhhhhhhhhhh.eeee........hhhhhh--------------hhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhh..ee.......ee...eeeeee...hhhhhhhhhhh..hhhhhhhhhhhhhh...hhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh...eeeehhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh......eeeee......eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLPAB_1      ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLPAB_2            ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qvr C   4 ERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPKVEGAEVGQYLTSRLSGALNRAEGLMEELKDRYVAVDTLVLALAEATPGLPGLEALKGALKELRGGRTVQTEHAESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM-----------EFEERLKAVIQEVVQSQGEVILFIDE-------------------LKPALARGELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRL--------------QLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGPAGLVFAVPA 850
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233|        -  |    253       263       | -         -       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633  |      -       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       
                                                                                                                                                                                                                                                                234         246                      271                 291                                                                                                                                                                                                                                                                                                                                                      636            651
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 9)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (3, 13)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (4, 15)

Asymmetric Unit
(-)
Clan: P-loop_NTPase (1112)
(-)
Clan: no clan defined [family: ClpB_D2-small] (9)
(-)
Clan: no clan defined [family: Clp_N] (16)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (CLPB_THET8 | Q9RA63)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0019538    protein metabolic process    The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.
    GO:0016485    protein processing    Any protein maturation process achieved by the cleavage of a peptide bond or bonds within a protein. Protein maturation is the process leading to the attainment of the full functional capacity of a protein.
    GO:0009408    response to heat    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    ANP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1qvr)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1qvr
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  CLPB_THET8 | Q9RA63
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  CLPB_THET8 | Q9RA63
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CLPB_THET8 | Q9RA63: 4fct 4fcv 4fcw 4fd2 4hse 4lj4 4lj5 4lj6 4lj7 4lj8 4lj9 4lja

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1QVR)