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(-) Description

Title :  CRYSTAL STRUCTURE OF VIP2 WITH NAD
 
Authors :  S. Han, J. A. Craig, C. D. Putnam, N. B. Carozzi, J. A. Tainer
Date :  25 Jun 99  (Deposition) - 29 Dec 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha-Beta Protein, Protein-Nad Complex, Binary Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Han, J. A. Craig, C. D. Putnam, N. B. Carozzi, J. A. Tainer
Evolution And Mechanism From Structures Of An Adp-Ribosylating Toxin And Nad Complex.
Nat. Struct. Biol. V. 6 932 1999
PubMed-ID: 10504727  |  Reference-DOI: 10.1038/13300
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ADP-RIBOSYLTRANSFERASE
    Chains: A
    EC Number: 2.4.2.30
    Engineered: YES
    Expression System: BACILLUS CEREUS
    Expression System Taxid: 1396
    Fragment: MATURE VIP2
    Mutation: YES
    Organism Scientific: BACILLUS CEREUS
    Organism Taxid: 1396
    Other Details: COMPLEXED WITH NAD

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1NAD1Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:307 , ARG A:315 , ARG A:349 , TRP A:350 , PRO A:354 , GLU A:355 , ASP A:381 , THR A:387 , PHE A:397 , ARG A:400 , SER A:425 , GLU A:428 , HOH A:1033 , HOH A:1089BINDING SITE FOR RESIDUE NAD A 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1QS2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1QS2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1QS2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1QS2)

(-) Exons   (0, 0)

(no "Exon" information available for 1QS2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:401
 aligned with Q844J9_BACTU | Q844J9 from UniProtKB/TrEMBL  Length:462

    Alignment length:401
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461 
         Q844J9_BACTU    62 KVEDFKEDKEKAKEWGKEKEKEWKLTATEKGKMNNFLDNKNDIKTNYKEITFSMAGSFEDEIKDLKEIDKIFDKANLSSPIITYKNVEPATIGFNKSLTEGNTINSDAMAQFKEQFLDRDIKFDSYLDTHLTVQQVSSKERVILKVKVPSGKGSTTPTKAGIILNNSEYKMLIDNGYMVHVDKVSKVVKKGVECLQVEGTLKKSLDFKNDINAGAHSWGMKNYEEWAKDLTDLQREALDGYARQDYKEINNYLRNQGGNGNEKLDAQIKNISDALGKKPIPENITVYRWCGMPEFGYQISDPLPSLKDFEEQFLNTIKEDKGYMSTSLSSERLAAFGSRKIILRLQVPKGSTGAYLSAIGGFANEKEILLDKDSKYHIDKVTEVIIKGVKRYVVDATLLTN 462
               SCOP domains d1qs2a1 A:62-264 Vegetative insecticidal protein 2 (VIP2)                                                                                                                                                  d1qs2a2 A:265-462 Vegetative insecticidal protein 2 (VIP2)                                                                                                                                             SCOP domains
               CATH domains 1qs2A01 A:62-264 Toxin ADP-ribosyltransferase; Chain A, domain 1                                                                                                                                           1qs2A02 A:265-462 Toxin ADP-ribosyltransferase; Chain A, domain 1                                                                                                                                      CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADPrib_exo_Tox-1qs2A01 A:276-462                                                                                                                                                            Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADPrib_exo_Tox-1qs2A02 A:276-462                                                                                                                                                            Pfam domains (2)
         Sec.struct. author .ee....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh......eeeeeeeehhhhhh.....ee..ee.hhhhhhhhhhhh..ee.....eee............eeeeeee...........eeeeee..eeeeee...eeeeeeeeeeeee..eeeeeeeeeeee..........hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh......eeeeeeehhhhhh........hhhhhhhhhh..eeee...eeee.....hhhhh...eeeeeee.....eee.hhhh......eeee...eeeeeeeeeeeee..eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qs2 A  62 KVEDFKEDKEKAKEWGKEKEKEWKLTATEKGKMNNFLDNKNDIKTNYKEITFSMAGSFEDEIKDLKEIDKMFDKTNLSNSIITYKNVEPTTIGFNKSLTEGNTINSDAMAQFKEQFLDRDIKFDSYLDTHLTAQQVSSKERVILKVTVPSGKGSTTPTKAGVILNNSEYKMLIDNGYMVHVDKVSKVVKKGVECLQIEGTLKKSLDFKNDINAEAHSWGMKNYEEWAKDLTDSQREALDGYARQDYKEINNYLRNQGGSGNEKLDAQIKNISDALGKKPIPENITVYRWCGMPEFGYQISDPLPSLKDFEEQFLNTIKEDKGYMSTSLSSERLAAFGSRKIILRLQVPKGSTGAYLSAIGGFASEKEILLDKDSKYHIDKVTEVIIKGVKRYVVDATLLTN 462
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: ADP-ribosyl (56)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q844J9_BACTU | Q844J9)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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  1qs2
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  2.4.2.30
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q844J9_BACTU | Q844J9: 1qs1

(-) Related Entries Specified in the PDB File

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