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(-) Description

Title :  DNA DECAMER DUPLEX CONTAINING T-T DEWAR PHOTOPRODUCT
 
Authors :  J. -H. Lee, S. -H. Bae, Y. -J. Choi, B. -S. Choi
Date :  20 Jul 99  (Deposition) - 11 May 00  (Release) - 02 Feb 10  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B
Keywords :  Deoxyribonucleic Acid, Dna Photoproduct, Dewar Product, (6-4) Adduct, Mutagenesis, Translesion Replication (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. -H. Lee, S. -H. Bae, B. -S. Choi
The Dewar Photoproduct Of Thymidylyl(3'-->5')- Thymidine (Dewar Product) Exhibits Mutagenic Behavior In Accordance With The "A Rule".
Proc. Natl. Acad. Sci. Usa V. 97 4591 2000
PubMed-ID: 10758155  |  Reference-DOI: 10.1073/PNAS.080057097

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*CP*AP*(HYD)TP*+TP*AP*CP*GP*C)- 3')
    Chains: A
    Other Details: BOND FORMED BETWEEN C6(T5) AND C4(T6) BOND FORMED BETWEEN N3(T6) AND C6(T6)
    Synthetic: YES
 
Molecule 2 - DNA (5'-D(*GP*CP*GP*TP*GP*AP*TP*GP*CP*G)-3')
    Chains: B
    Synthetic: YES

 Structural Features

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NMR Structure : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

NMR Structure (2, 2)
No.NameCountTypeFull Name
164T1Mod. Nucleotide5-HYDROXY-THYMIDINE-5'-MONOPHOSPHATE
2TA31Mod. Nucleotide(4S,5R)-3-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-5-METHYL-1,3-DIAZABICYCLO[2.2.0]HEXAN-2-ONE

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:10
                                         
                  1qkg A  1 CGCAttACGC 10
                                ||  10
                                ||    
                                5-64T 
                                 6-TA3


Chain B from PDB  Type:DNA  Length:10
                                         
                  1qkg B 11 GCGTGATGCG 20
                                    20
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 Classification and Annotation

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NMR Structure(hide GO term definitions)
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(-) Related Entries Specified in the PDB File

1cfl DNA DECAMER DUPLEX CONTAINING T5-T6 PHOTOADDUCT