1QCH - JenaLib

Title :   STRUCTURE, DYNAMICS AND HYDRATION OF THE NOGALAMYCIN-D(ATGCAT)2 COMPLEX DETERMINED BY NMR AND MOLECULAR DYNAMICS SIMULATIONS IN SOLUTION

Authors :   H. E. L. Williams, M. S. Searle

Date :   05 May 99 (Deposition) - 02 Aug 99 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B

Keywords :   Nogalamycin, Nogalamycin-Dna Complex, Nmr Spectroscopy, Anthracycline Antibiotic, Hydration (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. E. Williams, M. S. Searle
Structure, Dynamics And Hydration Of The Nogalamycin-D(Atgcat)2Complex Determined By Nmr And Molecular Dynamics Simulations In Solution.
J. Mol. Biol. V. 290 699 1999
PubMed-ID: 10395824 | Reference-DOI: 10.1006/JMBI.1999.2903
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 10)

Sites (10, 10)

NMR Structure (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	DT A:2 , DG A:3 , DC A:4 , DA A:5 , HOH A:165 , HOH A:190 , HOH A:221 , HOH A:354 , HOH A:653 , HOH A:724 , HOH A:1519 , HOH A:1575 , HOH A:1627 , HOH A:1642 , HOH A:1650 , HOH A:1901 , HOH A:2034 , HOH A:2072 , DG B:9 , DC B:10 , DA B:11 , HOH B:603 , HOH B:1309	BINDING SITE FOR RESIDUE NGM A 13
02	AC2	SOFTWARE	HOH A:30 , HOH A:263 , HOH B:563 , HOH B:1186 , HOH B:1259 , HOH B:1498	BINDING SITE FOR RESIDUE NA B 15
03	AC3	SOFTWARE	HOH A:1143 , HOH A:1696 , HOH A:2229 , HOH B:1305	BINDING SITE FOR RESIDUE NA A 16
04	AC4	SOFTWARE	HOH A:85 , HOH A:778 , HOH A:1242 , HOH A:1554 , HOH A:1658 , HOH B:1542	BINDING SITE FOR RESIDUE NA B 17
05	AC5	SOFTWARE	HOH B:294 , HOH B:622 , HOH B:697 , HOH B:2231	BINDING SITE FOR RESIDUE NA B 18
06	AC6	SOFTWARE	HOH B:715 , HOH B:897 , HOH B:904 , HOH B:1093 , HOH B:1381 , HOH B:1692	BINDING SITE FOR RESIDUE NA B 19
07	AC7	SOFTWARE	HOH A:24 , HOH A:572 , HOH A:1096 , HOH A:1977 , HOH A:2035 , HOH B:548	BINDING SITE FOR RESIDUE NA B 20
08	AC8	SOFTWARE	DT A:6 , HOH A:366 , DT B:8 , HOH B:200 , HOH B:1045 , HOH B:1153	BINDING SITE FOR RESIDUE NA A 21
09	AC9	SOFTWARE	HOH A:814 , HOH B:319 , HOH B:413 , HOH B:482 , HOH B:918 , HOH B:1124	BINDING SITE FOR RESIDUE NA B 22
10	BC1	SOFTWARE	HOH A:574 , HOH A:643 , HOH A:764 , HOH A:779 , HOH A:794 , HOH A:1473	BINDING SITE FOR RESIDUE NA B 23

SS Bonds (0, 0)

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PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

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Chain A from PDB  Type:DNA  Length:6
                                     
                  1qch A  1 ATGCAT  6

Chain B from PDB  Type:DNA  Length:6
                                     
                  1qch B  7 ATGCAT 12

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