1Q50 - JenaLib

Biol.Unit 1 - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Title :   PHOSPHOGLUCOSE ISOMERASE FROM LEISHMANIA MEXICANA.

Authors :   A. T. Cordeiro, P. A. M. Michels, L. F. Delboni, O. H. Thiemann

Date :   05 Aug 03 (Deposition) - 29 Jun 04 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. T. Cordeiro, P. A. M. Michels, L. F. Delboni, O. H. Thiemann
The Crystal Structure Of Glucose-6-Phosphate Isomerase From Leishmania Mexicana Reveals Novel Active Site Features
Eur. J. Biochem. V. 271 2765 2004
PubMed-ID: 15206941 | Reference-DOI: 10.1111/J.1432-1033.2004.04205.X

Molecule 1 - GLUCOSE-6-PHOSPHATE ISOMERASE
	Chains	:	A
	EC Number	:	5.3.1.9
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	PGI
	Organism Scientific	:	LEISHMANIA MEXICANA
	Organism Taxid	:	5665
	Synonym	:	GPI, PHOSPHOGLUCOSE ISOMERASE, PGI, PHOSPHOHEXOSE ISOMERASE, PHI

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1Q50)

(no "Site" information available for 1Q50)

(no "SS Bond" information available for 1Q50)

(no "Cis Peptide Bond" information available for 1Q50)

(no "SAP(SNP)/Variant" information available for 1Q50)

Asymmetric Unit (3, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	P_GLUCOSE_ISOMERASE_3	PS51463	Glucose-6-phosphate isomerase family profile.	G6PI_LEIME	53-602	1	A:53-602
2	P_GLUCOSE_ISOMERASE_1	PS00765	Phosphoglucose isomerase signature 1.	G6PI_LEIME	320-333	1	A:320-333
3	P_GLUCOSE_ISOMERASE_2	PS00174	Phosphoglucose isomerase signature 2.	G6PI_LEIME	552-569	1	A:552-569

Biological Unit 1 (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	P_GLUCOSE_ISOMERASE_3	PS51463	Glucose-6-phosphate isomerase family profile.	G6PI_LEIME	53-602	2	A:53-602
2	P_GLUCOSE_ISOMERASE_1	PS00765	Phosphoglucose isomerase signature 1.	G6PI_LEIME	320-333	2	A:320-333
3	P_GLUCOSE_ISOMERASE_2	PS00174	Phosphoglucose isomerase signature 2.	G6PI_LEIME	552-569	2	A:552-569

(no "Exon" information available for 1Q50)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:561
 aligned with G6PI_LEIME | P42861 from UniProtKB/Swiss-Prot  Length:605

    Alignment length:561
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603 
           G6PI_LEIME    44 GVTDSSLLNLPAWKRLQSLYEKYGNDSILSHFEKDHQRFQRYSIEIDLHSDDNFLFLDYSKSHINDEIKDALVALAEERGVRAFAKAMFDGQRVNSTENRAVLHVALRNRSNRPIIVDGKDVMSDVNNVLAQMKDFTERVRSGEWKGQTGKSIYNIVNIGIGGSDLGPVMVTEALKPFSKRDLHCFFVSNVDGTHMAEVLKQVNLEETIFIIASKTFTTQETLTNAMSARNALMSYLKENGISTDGAVAKHFVALSTNTEKVREFGIDTVNMFAFWDWVGGRYSVWSAIGLSVMLSIGYDNFVEFLTGAHVMDNHFASTPTEQNLPMMLALVGIWYNNFFGSETQAVLPYDQYLWRLPAYLQQLDMESNGKGVTKKSGAVAVQTGPIVFGEAGTNGQHAFYQLIHQGTKIIPCDFIGCVQTQNRVGDHHRTLMSNFFAQTEALMVGKNAEEVRQELVKSGMSGDAIENMIPHKTFTGSRPSNSILVNALTPRALGAIIAMYEHKVLVQGAIWGINSYDQWGVELGKVLAKSILPQLKSGNIVSDHDGSTNGLINMFNTRAH 604
               SCOP domains d1q50a_ A: Phosphoglucose isomerase, PGI                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains 1q50A01 A:44-185,A:320-556 Glucose-6-phosphate isomerase like protein; domain 1                                                               1q50A02 A:186-319 Glucose-6-phosphate isomerase like protein; domain 1                                                                1q50A01 A:44-185,A:320-556 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                                                              1q50A03 A:557-604                                CATH domains
               Pfam domains ---------------------------------------------------------PGI-1q50A01 A:101-596                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           -------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhh..hhhhhhhhh.hhhhhheeeee......eeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhh.......ee..eehhhhhhhhhhhhhhhhhhhhh............eeeee..hhhhhhhhhhhhhhhhhh....eeeee....hhhhhhhhh..hhh.eeeeee.....hhhhhhhhhhhhhhhhhhhhhh.....hhhhhheeee..hhhhhhhh..hhh.ee......hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhhhhhh................eee..........hhhhhhhh.....eeeeee........hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.........hhhhhh......eeeeee...hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh.hhhhhh.........hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------P_GLUCOSE_ISOMERASE_3  PDB: A:53-602 UniProt: 53-602                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  -- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P_GLUCOSE_ISOM--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P_GLUCOSE_ISOMERAS----------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1q50 A  44 GVTDSSLLNLPAWKRLQSLYEKYGNDSILSHFEKDHQRFQRYSIEIDLHSDDNFLFLDYSKSHINDEIKDALVALAEERGVRAFAKAMFDGQRVNSTENRAVLHVALRNRSNRPIIVDGKDVMSDVNNVLAQMKDFTERVRSGEWKGQTGKSIYNIVNIGIGGSDLGPVMVTEALKPFSKRDLHCFFVSNVDGTHMAEVLKQVNLEETIFIIASKTFTTQETLTNAMSARNALMSYLKENGISTDGAVAKHFVALSTNTEKVREFGIDTVNMFAFWDWVGGRYSVWSAIGLSVMLSIGYDNFVEFLTGAHVMDNHFASTPTEQNLPMMLALVGIWYNNFFGSETQAVLPYDQYLWRLPAYLQQLDMESNGKGVTKKSGAVAVQTGPIVFGEAGTNGQHAFYQLIHQGTKIIPCDFIGCVQTQNRVGDHHRTLMSNFFAQTEALMVGKNAEEVRQELVKSGMSGDAIENMIPHKTFTGSRPSNSILVNALTPRALGAIIAMYEHKVLVQGAIWGINSYDQWGVELGKVLAKSILPQLKSGNIVSDHDGSTNGLINMFNTRAH 604
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

)

Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: SIS domain (85)

Superfamily: SIS domain (85)

Family: Phosphoglucose isomerase, PGI (37)

Protein domain: Phosphoglucose isomerase, PGI (24)

Trypanosome (Leishmania mexicana) [TaxId: 5665] (2)

d1q50a_

Asymmetric Unit

Clans(

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Families(

)

Organisms( (-)

)

Clan: SIS (53)

Family: PGI (23)

Leishmania mexicana (2)

PGI-1q50A01

A:101-596

Asymmetric Unit(hide GO term definitions)

Chain A (G6PI_LEIME | P42861)

molecular function
	GO:0004347	glucose-6-phosphate isomerase activity	Catalysis of the reaction: D-glucose 6-phosphate = D-fructose 6-phosphate.
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
biological process
	GO:0006094	gluconeogenesis	The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.
	GO:0006096	glycolytic process	The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric Unit
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	Cis Peptide Bonds
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Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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	1q50
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	5.3.1.9
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	G6PI_LEIME \| P42861	:	1t10

1jlh	HUMAN PGI
1q1i	PGI FROM L. MEXICANA COMPLEXED WITH F6P

Description

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Ligands, Modified Residues, Ions (0, 0)

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