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(-) Description

Title :  NMR SOLUTION STRUCTURE OF DR0079: AN HYPOTHETICAL NUDIX PROTEIN FROM D. RADIODURANS
 
Authors :  G. W. Buchko, S. Ni, S. R. Holbrook, M. A. Kennedy
Date :  23 Jul 03  (Deposition) - 12 Aug 03  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
Keywords :  Nudix Hydrolase, Radiation Resistance (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. W. Buchko, S. Ni, S. R. Holbrook, M. A. Kennedy
Solution Structure Of Hypothetical Nudix Hydrolase Dr0079 From Extremely Radiation-Resistant Deinococcus Radiodurans Bacterium
Proteins V. 56 28 2004
PubMed-ID: 15162484  |  Reference-DOI: 10.1002/PROT.20082
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PUTATIVE NUDIX HYDROLASE DR0079
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET30B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: DR0079
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
    Synonym: MUTT/NUDIX FAMILY PROTEIN

 Structural Features

(-) Chains, Units

  
NMR Structure (10x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1Q27)

(-) Sites  (0, 0)

(no "Site" information available for 1Q27)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Q27)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1Q27)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Q27)

(-) PROSITE Motifs  (2, 2)

NMR Structure (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NUDIXPS51462 Nudix hydrolase domain profile.Y079_DEIRA32-162  1A:32-162
2NUDIX_BOXPS00893 Nudix box signature.Y079_DEIRA70-91  1A:70-91

(-) Exons   (0, 0)

(no "Exon" information available for 1Q27)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:171
 aligned with Y079_DEIRA | Q9RY71 from UniProtKB/Swiss-Prot  Length:171

    Alignment length:171
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170 
           Y079_DEIRA     1 MGGVSDERLDLVNERDEVVGQILRTDPALRWERVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLSSFMCVYELRSDATPIFNPNDISGGEWLTPEHLLARIAAGEAAKGDLAELVRRCYREEE 171
               SCOP domains d1q27a_ A: Hypothetical protein DR0079                                                                                                                                      SCOP domains
               CATH domains 1q27A00 A:1-171 Nucleoside Triphosphate Pyrophosphohydrolase                                                                                                                CATH domains
               Pfam domains --------------------------------NUDIX-1q27A01 A:33-167                                                                                                                 ---- Pfam domains
         Sec.struct. author .......eeeee.....eeeeee...........eeeeeeeee...eeee.................eeee.....hhhhhhhhhhhhhhh.......eeeeeee.........eeeeeeee...............eeehhhhhhhhhhhhh..hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------------------------NUDIX  PDB: A:32-162 UniProt: 32-162                                                                                               --------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------NUDIX_BOX  PDB: A:70-9-------------------------------------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1q27 A   1 MGGVSDERLDLVNERDEVVGQILRTDPALRWERVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLSSFMCVYELRSDATPIFNPNDISGGEWLTPEHLLARIAAGEAAKGDLAELVRRCYREEE 171
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: NUDIX (85)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (Y079_DEIRA | Q9RY71)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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  1q27
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  Y079_DEIRA | Q9RY71
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 Related Entries

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UniProtKB/Swiss-Prot
        Y079_DEIRA | Q9RY71: 2o5f

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