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(-) Description

Title :  CRYSTAL STRUCTURE OF NI-CONTAINING SUPEROXIDE DISMUTASE WITH NI-LIGATION CORRESPONDING TO THE OXIDIZED STATE
 
Authors :  J. Wuerges, J. -W. Lee, Y. -I. Yim, H. -S. Yim, S. -O. Kang, K. Djinovic Carugo
Date :  16 Jul 03  (Deposition) - 18 May 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C,D,E,F  (1x)
Biol. Unit 2:  G,H,I,J,K,L  (1x)
Keywords :  Homohexamer Of Four-Helix Bundles, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Wuerges, J. -W. Lee, Y. -I. Yim, H. -S. Yim, S. -O. Kang, K. Djinovic Carugo
Crystal Structure Of Nickel-Containing Superoxide Dismutase Reveals Another Type Of Active Site
Proc. Natl. Acad. Sci. Usa V. 101 8569 2004
PubMed-ID: 15173586  |  Reference-DOI: 10.1073/PNAS.0308514101
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SUPEROXIDE DISMUTASE [NI]
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    EC Number: 1.15.1.1
    Organism Scientific: STREPTOMYCES SEOULENSIS
    Organism Taxid: 73044
    Other Details: THE ASYMMETRIC UNIT CONTAINS TWO HEXAMERS
    Synonym: NICKEL-CONTAINING SUPEROXIDE DISMUTASE

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABCDEF      
Biological Unit 2 (1x):       GHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 28)

Asymmetric Unit (2, 28)
No.NameCountTypeFull Name
13NI12Ligand/IonNICKEL (III) ION
2SO416Ligand/IonSULFATE ION
Biological Unit 1 (2, 14)
No.NameCountTypeFull Name
13NI6Ligand/IonNICKEL (III) ION
2SO48Ligand/IonSULFATE ION
Biological Unit 2 (2, 14)
No.NameCountTypeFull Name
13NI6Ligand/IonNICKEL (III) ION
2SO48Ligand/IonSULFATE ION

(-) Sites  (28, 28)

Asymmetric Unit (28, 28)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPRO A:5 , GLY A:7 , TYR A:9 , ASP A:61 , LYS A:64 , HOH A:9100 , HOH A:9119 , HOH A:9125BINDING SITE FOR RESIDUE SO4 A 9001
02AC2SOFTWAREPRO B:5 , GLY B:7 , TYR B:9 , LYS B:64 , HOH B:9028 , HOH B:9085 , HOH B:9099BINDING SITE FOR RESIDUE SO4 B 9002
03AC3SOFTWAREPRO C:5 , GLY C:7 , TYR C:9 , LYS C:64 , HOH C:9041BINDING SITE FOR RESIDUE SO4 C 9003
04AC4SOFTWAREPRO D:5 , GLY D:7 , TYR D:9 , LYS D:64 , HOH D:9027 , HOH D:9130BINDING SITE FOR RESIDUE SO4 D 9004
05AC5SOFTWAREPRO E:5 , GLY E:7 , TYR E:9 , LYS E:64BINDING SITE FOR RESIDUE SO4 E 9005
06AC6SOFTWAREPRO F:5 , GLY F:7 , TYR F:9 , LYS F:64 , HOH F:9092 , HOH F:9095 , HOH F:9113BINDING SITE FOR RESIDUE SO4 F 9006
07AC7SOFTWAREPRO G:5 , GLY G:7 , TYR G:9 , HOH G:9120BINDING SITE FOR RESIDUE SO4 G 9007
08AC8SOFTWAREPRO H:5 , GLY H:7 , TYR H:9 , ASP H:61 , LYS H:64 , HOH H:9144BINDING SITE FOR RESIDUE SO4 H 9008
09AC9SOFTWAREPRO I:5 , GLY I:7 , TYR I:9 , ASP I:61 , LYS I:64 , HOH I:9095 , HOH I:9098BINDING SITE FOR RESIDUE SO4 I 9009
10BC1SOFTWAREPRO J:5 , GLY J:7 , TYR J:9 , LYS J:64 , HOH J:9142BINDING SITE FOR RESIDUE SO4 J 9010
11BC2SOFTWAREPRO K:5 , GLY K:7 , TYR K:9 , ASP K:61 , LYS K:64 , HOH K:9062BINDING SITE FOR RESIDUE SO4 K 9011
12BC3SOFTWAREPRO L:5 , GLY L:7 , TYR L:9 , LYS L:64 , HOH L:9054 , HOH L:9064BINDING SITE FOR RESIDUE SO4 L 9012
13BC4SOFTWAREGLN A:46 , HOH A:9061 , HOH A:9072 , GLN B:46 , GLN D:46BINDING SITE FOR RESIDUE SO4 A 9013
14BC5SOFTWAREGLN C:46 , HOH C:9057 , HOH C:9059 , HOH C:9062 , GLN E:46 , GLN F:46BINDING SITE FOR RESIDUE SO4 C 9014
15BC6SOFTWAREGLN G:46 , GLN H:46 , HOH H:9067 , GLN J:46BINDING SITE FOR RESIDUE SO4 H 9015
16BC7SOFTWAREGLN I:46 , HOH I:9077 , GLN K:46 , GLN L:46BINDING SITE FOR RESIDUE SO4 I 9016
17BC8SOFTWAREHIS A:1 , CYS A:2 , ASP A:3 , CYS A:6BINDING SITE FOR RESIDUE 3NI A 118
18BC9SOFTWAREHIS B:1 , CYS B:2 , ASP B:3 , CYS B:6BINDING SITE FOR RESIDUE 3NI B 118
19CC1SOFTWAREHIS C:1 , CYS C:2 , ASP C:3 , CYS C:6BINDING SITE FOR RESIDUE 3NI C 118
20CC2SOFTWAREHIS D:1 , CYS D:2 , ASP D:3 , CYS D:6BINDING SITE FOR RESIDUE 3NI D 118
21CC3SOFTWAREHIS E:1 , CYS E:2 , ASP E:3 , CYS E:6BINDING SITE FOR RESIDUE 3NI E 118
22CC4SOFTWAREHIS F:1 , CYS F:2 , CYS F:6BINDING SITE FOR RESIDUE 3NI F 118
23CC5SOFTWAREHIS G:1 , CYS G:2 , ASP G:3 , CYS G:6BINDING SITE FOR RESIDUE 3NI G 118
24CC6SOFTWAREHIS H:1 , CYS H:2 , ASP H:3 , CYS H:6BINDING SITE FOR RESIDUE 3NI H 118
25CC7SOFTWAREHIS I:1 , CYS I:2 , ASP I:3 , CYS I:6BINDING SITE FOR RESIDUE 3NI I 118
26CC8SOFTWAREHIS J:1 , CYS J:2 , ASP J:3 , CYS J:6BINDING SITE FOR RESIDUE 3NI J 118
27CC9SOFTWAREHIS K:1 , CYS K:2 , ASP K:3 , CYS K:6BINDING SITE FOR RESIDUE 3NI K 118
28DC1SOFTWAREHIS L:1 , CYS L:2 , ASP L:3 , CYS L:6BINDING SITE FOR RESIDUE 3NI L 118

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Q0D)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Leu A:4 -Pro A:5
2Leu B:4 -Pro B:5
3Leu C:4 -Pro C:5
4Leu D:4 -Pro D:5
5Leu E:4 -Pro E:5
6Leu F:4 -Pro F:5
7Leu G:4 -Pro G:5
8Leu H:4 -Pro H:5
9Leu I:4 -Pro I:5
10Leu J:4 -Pro J:5
11Leu K:4 -Pro K:5
12Leu L:4 -Pro L:5

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Q0D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1Q0D)

(-) Exons   (0, 0)

(no "Exon" information available for 1Q0D)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:117
 aligned with SODN_STRSO | P80734 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:117
                                    24        34        44        54        64        74        84        94       104       114       124       
           SODN_STRSO    15 HCDLPCGVYDPAQARIEAESVKAIQEKMAANDDLHFQIRATVIKEQRAELAKHHLDVLWSDYFKPPHFESYPELHTLVNEAVKALSAAKASTDPATGQKALDYIAQIDKIFWETKKA 131
               SCOP domains d1q0da_ A: Nickel-containing superoxide dismutase, NiSOD                                                              SCOP domains
               CATH domains 1q0dA00 A:1-117 Nickel-containing superoxide dismutase, NiSOD                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 1q0d A   1 HCDLPCGVYDPAQARIEAESVKAIQEKMAANDDLHFQIRATVIKEQRAELAKHHLDVLWSDYFKPPHFESYPELHTLVNEAVKALSAAKASTDPATGQKALDYIAQIDKIFWETKKA 117
                                    10        20        30        40        50        60        70        80        90       100       110       


Chain B from PDB  Type:PROTEIN  Length:117
 aligned with SODN_STRSO | P80734 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:117
                                    24        34        44        54        64        74        84        94       104       114       124       
           SODN_STRSO    15 HCDLPCGVYDPAQARIEAESVKAIQEKMAANDDLHFQIRATVIKEQRAELAKHHLDVLWSDYFKPPHFESYPELHTLVNEAVKALSAAKASTDPATGQKALDYIAQIDKIFWETKKA 131
               SCOP domains d1q0db_ B: Nickel-containing superoxide dismutase, NiSOD                                                              SCOP domains
               CATH domains 1q0dB00 B:1-117 Nickel-containing superoxide dismutase, NiSOD                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 1q0d B   1 HCDLPCGVYDPAQARIEAESVKAIQEKMAANDDLHFQIRATVIKEQRAELAKHHLDVLWSDYFKPPHFESYPELHTLVNEAVKALSAAKASTDPATGQKALDYIAQIDKIFWETKKA 117
                                    10        20        30        40        50        60        70        80        90       100       110       


Chain C from PDB  Type:PROTEIN  Length:117
 aligned with SODN_STRSO | P80734 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:117
                                    24        34        44        54        64        74        84        94       104       114       124       
           SODN_STRSO    15 HCDLPCGVYDPAQARIEAESVKAIQEKMAANDDLHFQIRATVIKEQRAELAKHHLDVLWSDYFKPPHFESYPELHTLVNEAVKALSAAKASTDPATGQKALDYIAQIDKIFWETKKA 131
               SCOP domains d1q0dc_ C: Nickel-containing superoxide dismutase, NiSOD                                                              SCOP domains
               CATH domains 1q0dC00 C:1-117 Nickel-containing superoxide dismutase, NiSOD                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 1q0d C   1 HCDLPCGVYDPAQARIEAESVKAIQEKMAANDDLHFQIRATVIKEQRAELAKHHLDVLWSDYFKPPHFESYPELHTLVNEAVKALSAAKASTDPATGQKALDYIAQIDKIFWETKKA 117
                                    10        20        30        40        50        60        70        80        90       100       110       


Chain D from PDB  Type:PROTEIN  Length:117
 aligned with SODN_STRSO | P80734 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:117
                                    24        34        44        54        64        74        84        94       104       114       124       
           SODN_STRSO    15 HCDLPCGVYDPAQARIEAESVKAIQEKMAANDDLHFQIRATVIKEQRAELAKHHLDVLWSDYFKPPHFESYPELHTLVNEAVKALSAAKASTDPATGQKALDYIAQIDKIFWETKKA 131
               SCOP domains d1q0dd_ D: Nickel-containing superoxide dismutase, NiSOD                                                              SCOP domains
               CATH domains 1q0dD00 D:1-117 Nickel-containing superoxide dismutase, NiSOD                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 1q0d D   1 HCDLPCGVYDPAQARIEAESVKAIQEKMAANDDLHFQIRATVIKEQRAELAKHHLDVLWSDYFKPPHFESYPELHTLVNEAVKALSAAKASTDPATGQKALDYIAQIDKIFWETKKA 117
                                    10        20        30        40        50        60        70        80        90       100       110       


Chain E from PDB  Type:PROTEIN  Length:117
 aligned with SODN_STRSO | P80734 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:117
                                    24        34        44        54        64        74        84        94       104       114       124       
           SODN_STRSO    15 HCDLPCGVYDPAQARIEAESVKAIQEKMAANDDLHFQIRATVIKEQRAELAKHHLDVLWSDYFKPPHFESYPELHTLVNEAVKALSAAKASTDPATGQKALDYIAQIDKIFWETKKA 131
               SCOP domains d1q0de_ E: Nickel-containing superoxide dismutase, NiSOD                                                              SCOP domains
               CATH domains 1q0dE00 E:1-117 Nickel-containing superoxide dismutase, NiSOD                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 1q0d E   1 HCDLPCGVYDPAQARIEAESVKAIQEKMAANDDLHFQIRATVIKEQRAELAKHHLDVLWSDYFKPPHFESYPELHTLVNEAVKALSAAKASTDPATGQKALDYIAQIDKIFWETKKA 117
                                    10        20        30        40        50        60        70        80        90       100       110       


Chain F from PDB  Type:PROTEIN  Length:117
 aligned with SODN_STRSO | P80734 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:117
                                    24        34        44        54        64        74        84        94       104       114       124       
           SODN_STRSO    15 HCDLPCGVYDPAQARIEAESVKAIQEKMAANDDLHFQIRATVIKEQRAELAKHHLDVLWSDYFKPPHFESYPELHTLVNEAVKALSAAKASTDPATGQKALDYIAQIDKIFWETKKA 131
               SCOP domains d1q0df_ F: Nickel-containing superoxide dismutase, NiSOD                                                              SCOP domains
               CATH domains 1q0dF00 F:1-117 Nickel-containing superoxide dismutase, NiSOD                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 1q0d F   1 HCDLPCGVYDPAQARIEAESVKAIQEKMAANDDLHFQIRATVIKEQRAELAKHHLDVLWSDYFKPPHFESYPELHTLVNEAVKALSAAKASTDPATGQKALDYIAQIDKIFWETKKA 117
                                    10        20        30        40        50        60        70        80        90       100       110       


Chain G from PDB  Type:PROTEIN  Length:117
 aligned with SODN_STRSO | P80734 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:117
                                    24        34        44        54        64        74        84        94       104       114       124       
           SODN_STRSO    15 HCDLPCGVYDPAQARIEAESVKAIQEKMAANDDLHFQIRATVIKEQRAELAKHHLDVLWSDYFKPPHFESYPELHTLVNEAVKALSAAKASTDPATGQKALDYIAQIDKIFWETKKA 131
               SCOP domains d1q0dg_ G: Nickel-containing superoxide dismutase, NiSOD                                                              SCOP domains
               CATH domains 1q0dG00 G:1-117 Nickel-containing superoxide dismutase, NiSOD                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 1q0d G   1 HCDLPCGVYDPAQARIEAESVKAIQEKMAANDDLHFQIRATVIKEQRAELAKHHLDVLWSDYFKPPHFESYPELHTLVNEAVKALSAAKASTDPATGQKALDYIAQIDKIFWETKKA 117
                                    10        20        30        40        50        60        70        80        90       100       110       


Chain H from PDB  Type:PROTEIN  Length:117
 aligned with SODN_STRSO | P80734 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:117
                                    24        34        44        54        64        74        84        94       104       114       124       
           SODN_STRSO    15 HCDLPCGVYDPAQARIEAESVKAIQEKMAANDDLHFQIRATVIKEQRAELAKHHLDVLWSDYFKPPHFESYPELHTLVNEAVKALSAAKASTDPATGQKALDYIAQIDKIFWETKKA 131
               SCOP domains d1q0dh_ H: Nickel-containing superoxide dismutase, NiSOD                                                              SCOP domains
               CATH domains 1q0dH00 H:1-117 Nickel-containing superoxide dismutase, NiSOD                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 1q0d H   1 HCDLPCGVYDPAQARIEAESVKAIQEKMAANDDLHFQIRATVIKEQRAELAKHHLDVLWSDYFKPPHFESYPELHTLVNEAVKALSAAKASTDPATGQKALDYIAQIDKIFWETKKA 117
                                    10        20        30        40        50        60        70        80        90       100       110       


Chain I from PDB  Type:PROTEIN  Length:117
 aligned with SODN_STRSO | P80734 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:117
                                    24        34        44        54        64        74        84        94       104       114       124       
           SODN_STRSO    15 HCDLPCGVYDPAQARIEAESVKAIQEKMAANDDLHFQIRATVIKEQRAELAKHHLDVLWSDYFKPPHFESYPELHTLVNEAVKALSAAKASTDPATGQKALDYIAQIDKIFWETKKA 131
               SCOP domains d1q0di_ I: Nickel-containing superoxide dismutase, NiSOD                                                              SCOP domains
               CATH domains 1q0dI00 I:1-117 Nickel-containing superoxide dismutase, NiSOD                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 1q0d I   1 HCDLPCGVYDPAQARIEAESVKAIQEKMAANDDLHFQIRATVIKEQRAELAKHHLDVLWSDYFKPPHFESYPELHTLVNEAVKALSAAKASTDPATGQKALDYIAQIDKIFWETKKA 117
                                    10        20        30        40        50        60        70        80        90       100       110       


Chain J from PDB  Type:PROTEIN  Length:117
 aligned with SODN_STRSO | P80734 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:117
                                    24        34        44        54        64        74        84        94       104       114       124       
           SODN_STRSO    15 HCDLPCGVYDPAQARIEAESVKAIQEKMAANDDLHFQIRATVIKEQRAELAKHHLDVLWSDYFKPPHFESYPELHTLVNEAVKALSAAKASTDPATGQKALDYIAQIDKIFWETKKA 131
               SCOP domains d1q0dj_ J: Nickel-containing superoxide dismutase, NiSOD                                                              SCOP domains
               CATH domains 1q0dJ00 J:1-117 Nickel-containing superoxide dismutase, NiSOD                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 1q0d J   1 HCDLPCGVYDPAQARIEAESVKAIQEKMAANDDLHFQIRATVIKEQRAELAKHHLDVLWSDYFKPPHFESYPELHTLVNEAVKALSAAKASTDPATGQKALDYIAQIDKIFWETKKA 117
                                    10        20        30        40        50        60        70        80        90       100       110       


Chain K from PDB  Type:PROTEIN  Length:117
 aligned with SODN_STRSO | P80734 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:117
                                    24        34        44        54        64        74        84        94       104       114       124       
           SODN_STRSO    15 HCDLPCGVYDPAQARIEAESVKAIQEKMAANDDLHFQIRATVIKEQRAELAKHHLDVLWSDYFKPPHFESYPELHTLVNEAVKALSAAKASTDPATGQKALDYIAQIDKIFWETKKA 131
               SCOP domains d1q0dk_ K: Nickel-containing superoxide dismutase, NiSOD                                                              SCOP domains
               CATH domains 1q0dK00 K:1-117 Nickel-containing superoxide dismutase, NiSOD                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 1q0d K   1 HCDLPCGVYDPAQARIEAESVKAIQEKMAANDDLHFQIRATVIKEQRAELAKHHLDVLWSDYFKPPHFESYPELHTLVNEAVKALSAAKASTDPATGQKALDYIAQIDKIFWETKKA 117
                                    10        20        30        40        50        60        70        80        90       100       110       


Chain L from PDB  Type:PROTEIN  Length:117
 aligned with SODN_STRSO | P80734 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:117
                                    24        34        44        54        64        74        84        94       104       114       124       
           SODN_STRSO    15 HCDLPCGVYDPAQARIEAESVKAIQEKMAANDDLHFQIRATVIKEQRAELAKHHLDVLWSDYFKPPHFESYPELHTLVNEAVKALSAAKASTDPATGQKALDYIAQIDKIFWETKKA 131
               SCOP domains d1q0dl_ L: Nickel-containing superoxide dismutase, NiSOD                                                              SCOP domains
               CATH domains 1q0dL00 L:1-117 Nickel-containing superoxide dismutase, NiSOD                                                         CATH domains
           Pfam domains (1) Sod_Ni-1q0dL01 L:1-115                                                                                             -- Pfam domains (1)
           Pfam domains (2) Sod_Ni-1q0dL02 L:1-115                                                                                             -- Pfam domains (2)
           Pfam domains (3) Sod_Ni-1q0dL03 L:1-115                                                                                             -- Pfam domains (3)
           Pfam domains (4) Sod_Ni-1q0dL04 L:1-115                                                                                             -- Pfam domains (4)
           Pfam domains (5) Sod_Ni-1q0dL05 L:1-115                                                                                             -- Pfam domains (5)
           Pfam domains (6) Sod_Ni-1q0dL06 L:1-115                                                                                             -- Pfam domains (6)
           Pfam domains (7) Sod_Ni-1q0dL07 L:1-115                                                                                             -- Pfam domains (7)
           Pfam domains (8) Sod_Ni-1q0dL08 L:1-115                                                                                             -- Pfam domains (8)
           Pfam domains (9) Sod_Ni-1q0dL09 L:1-115                                                                                             -- Pfam domains (9)
          Pfam domains (10) Sod_Ni-1q0dL10 L:1-115                                                                                             -- Pfam domains (10)
          Pfam domains (11) Sod_Ni-1q0dL11 L:1-115                                                                                             -- Pfam domains (11)
          Pfam domains (12) Sod_Ni-1q0dL12 L:1-115                                                                                             -- Pfam domains (12)
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 1q0d L   1 HCDLPCGVYDPAQARIEAESVKAIQEKMAANDDLHFQIRATVIKEQRAELAKHHLDVLWSDYFKPPHFESYPELHTLVNEAVKALSAAKASTDPATGQKALDYIAQIDKIFWETKKA 117
                                    10        20        30        40        50        60        70        80        90       100       110
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  - → Gap (green background, '-', border residues have a numbering label)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 12)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 12)

Asymmetric Unit
(-)
Clan: no clan defined [family: Sod_Ni] (8)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (SODN_STRSO | P80734)
molecular function
    GO:0016209    antioxidant activity    Inhibition of the reactions brought about by dioxygen (O2) or peroxides. Usually the antioxidant is effective because it can itself be more easily oxidized than the substance protected. The term is often applied to components that can trap free radicals, thereby breaking the chain reaction that normally leads to extensive biological damage.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016151    nickel cation binding    Interacting selectively and non-covalently with nickel (Ni) cations.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0004784    superoxide dismutase activity    Catalysis of the reaction: 2 superoxide + 2 H+ = O2 + hydrogen peroxide.
biological process
    GO:0098869    cellular oxidant detoxification    Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0019430    removal of superoxide radicals    Any process, acting at the cellular level, involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2).
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SODN_STRSO | P80734: 1q0f 1q0g 1q0k 1q0m

(-) Related Entries Specified in the PDB File

1q0f CONTAINS THE PARTIALLY X-RAY REDUCED ENZYME IN THE SAME CRYSTAL FORM
1q0g CONTAINS THE FULLY X-RAY REDUCED ENZYME IN THE SAME CRYSTAL FORM
1q0k CONTAINS THE THIOSULFATE-REDUCED ENZYME IN THE SAME CRYSTAL FORM
1q0m CONTAINS THE FULLY X-RAY REDUCED ENZYME IN ANOTHER CRYSTAL FORM