1PVA - JenaLib

Title :   COMPARISON BETWEEN THE CRYSTAL AND THE SOLUTION STRUCTURES OF THE EF HAND PARVALBUMIN (ALPHA COMPONENT FROM PIKE MUSCLE)

Authors :   J. P. Declercq, B. Tinant, F. Roquet, J. Rambaud, J. Parello

Date :   16 Jan 95 (Deposition) - 31 Mar 95 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.65

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Calcium Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Roquet, J. Rambaud, J. P. Declercq, B. Tinant, C. Baldellon, A. Padilla, A. Cave, J. Parello
Comparison Between The Crystal And The Solution Structures Of The Ef Hand Parvalbumin (Alpha Component From Pike Muscle)
To Be Published
PubMed: search
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Sites (8, 8)

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:90 , ASP A:92 , ASP A:94 , LYS A:96 , GLU A:101 , HOH A:118	BINDING SITE FOR RESIDUE CA A 110
2	AC2	SOFTWARE	ASP A:51 , ASP A:53 , SER A:55 , PHE A:57 , GLU A:59 , GLU A:62	BINDING SITE FOR RESIDUE CA A 111
3	AC3	SOFTWARE	ASP B:90 , ASP B:92 , ASP B:94 , LYS B:96 , GLU B:101 , HOH B:118	BINDING SITE FOR RESIDUE CA B 110
4	AC4	SOFTWARE	ASP B:51 , ASP B:53 , SER B:55 , PHE B:57 , GLU B:59 , GLU B:62	BINDING SITE FOR RESIDUE CA B 111
5	ACD	AUTHOR	ASP A:51 , ALA A:52 , ASP A:53 , ALA A:54 , SER A:55 , GLY A:56 , PHE A:57 , ILE A:58 , GLU A:59 , GLU A:60 , GLU A:61 , GLU A:62	CATION BINDING SITE OCCUPIED BY CA2+ (A 111)
6	AEF	AUTHOR	ASP A:90 , LYS A:91 , ASP A:92 , GLY A:93 , ASP A:94 , GLY A:95 , LYS A:96 , ILE A:97 , GLY A:98 , ILE A:99 , ASP A:100 , GLU A:101	CATION BINDING SITE OCCUPIED BY CA2+ (A 110)
7	BCD	AUTHOR	ASP B:51 , ALA B:52 , ASP B:53 , ALA B:54 , SER B:55 , GLY B:56 , PHE B:57 , ILE B:58 , GLU B:59 , GLU B:60 , GLU B:61 , GLU B:62	CATION BINDING SITE OCCUPIED BY CA2+ (B 111)
8	BEF	AUTHOR	ASP B:90 , LYS B:91 , ASP B:92 , GLY B:93 , ASP B:94 , GLY B:95 , LYS B:96 , ILE B:97 , GLY B:98 , ILE B:99 , ASP B:100 , GLU B:101	CATION BINDING SITE OCCUPIED BY CA2+ (B 110)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (2, 4)

Asymmetric Unit (2, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_PRVA_ESOLU_001 *	K	27	A	PRVA_ESOLU	---	---	A/B	K	28	A
2	UniProt	VAR_PRVA_ESOLU_002 *	L	31	K	PRVA_ESOLU	---	---	A/B	L	32	K
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_PRVA_ESOLU_001 *	K	27	A	PRVA_ESOLU	---	---	A	K	28	A
2	UniProt	VAR_PRVA_ESOLU_002 *	L	31	K	PRVA_ESOLU	---	---	A	L	32	K
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_PRVA_ESOLU_001 *	K	27	A	PRVA_ESOLU	---	---	B	K	28	A
2	UniProt	VAR_PRVA_ESOLU_002 *	L	31	K	PRVA_ESOLU	---	---	B	L	32	K
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

PROSITE Motifs (2, 8)

Asymmetric Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EF_HAND_2	PS50222	EF-hand calcium-binding domain profile.	PRVA_ESOLU	37-72 76-108	4	A:38-73 B:38-73 A:77-109 B:77-109
2	EF_HAND_1	PS00018	EF-hand calcium-binding domain.	PRVA_ESOLU	50-62 89-101	4	A:51-63 B:51-63 A:90-102 B:90-102

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EF_HAND_2	PS50222	EF-hand calcium-binding domain profile.	PRVA_ESOLU	37-72 76-108	2	A:38-73 - A:77-109 -
2	EF_HAND_1	PS00018	EF-hand calcium-binding domain.	PRVA_ESOLU	50-62 89-101	2	A:51-63 - A:90-102 -

Biological Unit 2 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EF_HAND_2	PS50222	EF-hand calcium-binding domain profile.	PRVA_ESOLU	37-72 76-108	2	- B:38-73 - B:77-109
2	EF_HAND_1	PS00018	EF-hand calcium-binding domain.	PRVA_ESOLU	50-62 89-101	2	- B:51-63 - B:90-102

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:110
 aligned with PRVA_ESOLU | P02628 from UniProtKB/Swiss-Prot  Length:108

    Alignment length:110
                              1                                                                                                           
                              |      8        18        28        38        48        58        68        78        88        98       108
           PRVA_ESOLU     - --AKDLLKADDIKKALDAVKAEGSFNHKKFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETLVHEA 108
               SCOP domains d1pvaa_ A: Parvalbumin                                                                                         SCOP domains
               CATH domains -1pvaA00 A:1-109 EF-hand                                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhh.......hhhhhhhh......hhhhhhhhhhh.........hhhhhhhhhhh........hhhhhhhhhhh.........hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------A---K----------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------------------------------EF_HAND_2  PDB: A:38-73             ---EF_HAND_2  PDB: A:77-109          PROSITE (1)
                PROSITE (2) ---------------------------------------------------EF_HAND_1    --------------------------EF_HAND_1    ------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 1pva A   0 xAAKDLLKADDIKKALDAVKAEGSFNHKKFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETLVHEA 109
                            |        9        19        29        39        49        59        69        79        89        99       109
                            |                                                                                                             
                            0-ACE

Chain B from PDB  Type:PROTEIN  Length:110
 aligned with PRVA_ESOLU | P02628 from UniProtKB/Swiss-Prot  Length:108

    Alignment length:110
                              1                                                                                                           
                              |      8        18        28        38        48        58        68        78        88        98       108
           PRVA_ESOLU     - --AKDLLKADDIKKALDAVKAEGSFNHKKFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETLVHEA 108
               SCOP domains d1pvab_ B: Parvalbumin                                                                                         SCOP domains
               CATH domains -1pvaB00 B:1-109 EF-hand                                                                                       CATH domains
           Pfam domains (1) ------------------------------------------efhand-1pvaB01 B:42-70       --------------------------------------- Pfam domains (1)
           Pfam domains (2) ------------------------------------------efhand-1pvaB02 B:42-70       --------------------------------------- Pfam domains (2)
         Sec.struct. author ........hhhhhhhhhhh.......hhhhhhhh......hhhhhhhhhhh.........hhhhhhhhhhh........hhhhhhhhhhh.........hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------A---K----------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------------------------------EF_HAND_2  PDB: B:38-73             ---EF_HAND_2  PDB: B:77-109          PROSITE (1)
                PROSITE (2) ---------------------------------------------------EF_HAND_1    --------------------------EF_HAND_1    ------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 1pva B   0 xAAKDLLKADDIKKALDAVKAEGSFNHKKFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETLVHEA 109
                            |        9        19        29        39        49        59        69        79        89        99       109
                            0-ACE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (1, 2)

Gene Ontology (2, 2)

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