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(-) Description

Title :  NMR STRUCTURE OF A CYCLIC POLYAMIDE-DNA COMPLEX
 
Authors :  Q. Zhang, T. J. Dwyer, V. Tsui, D. A. Case, J. Cho, P. B. Dervan, D. E. Wemmer
Date :  18 Jun 03  (Deposition) - 29 Jun 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (21x)
Keywords :  Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Zhang, T. J. Dwyer, V. Tsui, D. A. Case, J. Cho, P. B. Dervan, D. E. Wemmer
Nmr Structure Of A Cyclic Polyamide-Dna Complex.
J. Am. Chem. Soc. V. 126 7958 2004
PubMed-ID: 15212545  |  Reference-DOI: 10.1021/JA0373622
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*CP*GP*CP*TP*AP*AP*CP*AP*GP*GP*C)-3'
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - 5'-D(*GP*CP*CP*TP*GP*TP*TP*AP*GP*CP*G)-3'
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (21x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1CYE1Ligand/Ion45-(3-AMINOPROPYL)-5,11,22,28,34-PENTAMETHYL-3,9,15,20,26,32,38,43-OCTAOXO-2,5,8,14,19,22,25,28,31,34,37,42,45,48-TETRADECAAZA-11-AZONIAHEPTACYCLO[42.2.1.1~4,7~.1~10,13~.1~21,24~.1~27,30~.1~33,36~]DOPENTACONTA-1(46),4(52),6,10(51),12,21(50),23,27(49),29,33(48),35,44(47)-DODECAENE

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDT A:4 , DA A:5 , DA A:6 , DC A:7 , DA A:8 , DG A:9 , DT B:15 , DG B:16 , DT B:17 , DT B:18 , DA B:19 , DG B:20BINDING SITE FOR RESIDUE CYE B 23

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1PQQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1PQQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1PQQ)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1PQQ)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA  Length:11
                                          
                  1pqq A  1 CGCTAACAGGC 11
                                    10 


Chain B from PDB  Type:DNA  Length:11
                                          
                  1pqq B 12 GCCTGTTAGCG 22
                                    21
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1PQQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1PQQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1PQQ)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 1PQQ)

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