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(-) Description

Title :  VVA2 (STRIP CRYSTAL FORM)
 
Authors :  S. -C. Lin, Y. -C. Lo, J. -Y. Lin, Y. -C. Liaw
Date :  16 Jun 03  (Deposition) - 24 Aug 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Keywords :  Volvatoxin A2, Strip Crystal Form (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. -C. Lin, Y. -C. Lo, J. -Y. Lin, Y. -C. Liaw
Crystal Structures And Electron Micrographs Of Fungal Volvatoxin A2
J. Mol. Biol. V. 343 477 2004
PubMed-ID: 15451675  |  Reference-DOI: 10.1016/J.JMB.2004.08.045
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - VOLVATOXIN A2
    Chains: A, B, C, D, E
    Organism Scientific: VOLVARIELLA VOLVACEA
    Organism Taxid: 36659

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (1x): A    
Biological Unit 2 (1x):  B   
Biological Unit 3 (1x):   C  
Biological Unit 4 (1x):    D 
Biological Unit 5 (1x):     E

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1PP6)

(-) Sites  (0, 0)

(no "Site" information available for 1PP6)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1PP6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1PP6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1PP6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1PP6)

(-) Exons   (0, 0)

(no "Exon" information available for 1PP6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:194
 aligned with Q6USC4_9AGAR | Q6USC4 from UniProtKB/TrEMBL  Length:217

    Alignment length:194
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212    
        Q6USC4_9AGAR     23 NVFQPVDQLPEDLIPSSIQVLKFSGKYLKLEQDKAYFDWPGFKTAIDNYTGEDLSFDKYDQSTINQQSQEVGAMVDKIAKFLHDAFAAVVDLSKLAAIILNTFTNLEEESSSGFLQFNTNNVKKNSSWEYRVLFSVPFGDNAPSYFYSLVTTILITADIEEKTGWWGLTSSTKKNFAVQIDALELVVKKGFKAP  216
               SCOP domains d1pp6a_ A: Volvatoxin A2                                                                                                                                                                           SCOP domains
               CATH domains 1pp6A00 A:5-198 Delta-endotoxin Cytb                                                                                                                                                               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee.....hhhhhhhhhhhhhh.............hhhhhhhh......eeeee..eeee...eeehhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhh....eeeeee....eeeeeeeeeee.........eeeeeeeeeeeee...hhhhhh......eeeeeeeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1pp6 A    5 NVFQPVDQLPEDLIPSSIQVLKFSGKYLKLEQDKAYFDWPGFKTAIDNYTGEDLSFDKYDQSTINQQSQEVGAMVDKIAKFLHDAFAAVVDLSKLAAIILNTFTNLEEESSSGFLQFNTNNVKKNSSWEYRVLFSVPFGDNAPSYFYSLVTTILITADIEEKTGWWGLTSSTKKNFAVQIDALELVVKKGFKAP  198
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194    


Chain B from PDB  Type:PROTEIN  Length:194
 aligned with Q6USC4_9AGAR | Q6USC4 from UniProtKB/TrEMBL  Length:217

    Alignment length:194
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212    
        Q6USC4_9AGAR     23 NVFQPVDQLPEDLIPSSIQVLKFSGKYLKLEQDKAYFDWPGFKTAIDNYTGEDLSFDKYDQSTINQQSQEVGAMVDKIAKFLHDAFAAVVDLSKLAAIILNTFTNLEEESSSGFLQFNTNNVKKNSSWEYRVLFSVPFGDNAPSYFYSLVTTILITADIEEKTGWWGLTSSTKKNFAVQIDALELVVKKGFKAP  216
               SCOP domains d1pp6b_ B: Volvatoxin A2                                                                                                                                                                           SCOP domains
               CATH domains 1pp6B00 B:1005-1198 Delta-endotoxin Cytb                                                                                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..hhhhhhhhhhhhhhhhh...........hhhhhhhhhh......eeeeeeeeeeeeeeeeehhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh....eeeee......eeeeeeeeeeee.......eeeeeeeeeeeee...............eeeeeeeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1pp6 B 1005 NVFQPVDQLPEDLIPSSIQVLKFSGKYLKLEQDKAYFDWPGFKTAIDNYTGEDLSFDKYDQSTINQQSQEVGAMVDKIAKFLHDAFAAVVDLSKLAAIILNTFTNLEEESSSGFLQFNTNNVKKNSSWEYRVLFSVPFGDNAPSYFYSLVTTILITADIEEKTGWWGLTSSTKKNFAVQIDALELVVKKGFKAP 1198
                                  1014      1024      1034      1044      1054      1064      1074      1084      1094      1104      1114      1124      1134      1144      1154      1164      1174      1184      1194    


Chain C from PDB  Type:PROTEIN  Length:194
 aligned with Q6USC4_9AGAR | Q6USC4 from UniProtKB/TrEMBL  Length:217

    Alignment length:194
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212    
        Q6USC4_9AGAR     23 NVFQPVDQLPEDLIPSSIQVLKFSGKYLKLEQDKAYFDWPGFKTAIDNYTGEDLSFDKYDQSTINQQSQEVGAMVDKIAKFLHDAFAAVVDLSKLAAIILNTFTNLEEESSSGFLQFNTNNVKKNSSWEYRVLFSVPFGDNAPSYFYSLVTTILITADIEEKTGWWGLTSSTKKNFAVQIDALELVVKKGFKAP  216
               SCOP domains d1pp6c_ C: Volvatoxin A2                                                                                                                                                                           SCOP domains
               CATH domains 1pp6C00 C:2005-2198 Delta-endotoxin Cytb                                                                                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..hhhhhhhhhhhhhh....eee....eeehhhhhhhhhh........eeeeeeee...eeeehhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh........ee..ee....eeeeeeeeeeeee.......eeeeeeeeeeeee...............eeee..eeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1pp6 C 2005 NVFQPVDQLPEDLIPSSIQVLKFSGKYLKLEQDKAYFDWPGFKTAIDNYTGEDLSFDKYDQSTINQQSQEVGAMVDKIAKFLHDAFAAVVDLSKLAAIILNTFTNLEEESSSGFLQFNTNNVKKNSSWEYRVLFSVPFGDNAPSYFYSLVTTILITADIEEKTGWWGLTSSTKKNFAVQIDALELVVKKGFKAP 2198
                                  2014      2024      2034      2044      2054      2064      2074      2084      2094      2104      2114      2124      2134      2144      2154      2164      2174      2184      2194    


Chain D from PDB  Type:PROTEIN  Length:194
 aligned with Q6USC4_9AGAR | Q6USC4 from UniProtKB/TrEMBL  Length:217

    Alignment length:194
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212    
        Q6USC4_9AGAR     23 NVFQPVDQLPEDLIPSSIQVLKFSGKYLKLEQDKAYFDWPGFKTAIDNYTGEDLSFDKYDQSTINQQSQEVGAMVDKIAKFLHDAFAAVVDLSKLAAIILNTFTNLEEESSSGFLQFNTNNVKKNSSWEYRVLFSVPFGDNAPSYFYSLVTTILITADIEEKTGWWGLTSSTKKNFAVQIDALELVVKKGFKAP  216
               SCOP domains d1pp6d_ D: Volvatoxin A2                                                                                                                                                                           SCOP domains
               CATH domains 1pp6D00 D:3005-3198 Delta-endotoxin Cytb                                                                                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee...hhhhhhhhhhhhhhhhh.ee......eehhhhhhhhh.......eeeeeeeeee...eeehhhhhhhhhhhhhhhhh......hhhhhhh...............eeee.......eeeeeeeee..........eeeeeeeeeeeee....hhhhh.......eeeeeeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1pp6 D 3005 NVFQPVDQLPEDLIPSSIQVLKFSGKYLKLEQDKAYFDWPGFKTAIDNYTGEDLSFDKYDQSTINQQSQEVGAMVDKIAKFLHDAFAAVVDLSKLAAIILNTFTNLEEESSSGFLQFNTNNVKKNSSWEYRVLFSVPFGDNAPSYFYSLVTTILITADIEEKTGWWGLTSSTKKNFAVQIDALELVVKKGFKAP 3198
                                  3014      3024      3034      3044      3054      3064      3074      3084      3094      3104      3114      3124      3134      3144      3154      3164      3174      3184      3194    


Chain E from PDB  Type:PROTEIN  Length:186
 aligned with Q6USC4_9AGAR | Q6USC4 from UniProtKB/TrEMBL  Length:217

    Alignment length:194
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212    
        Q6USC4_9AGAR     23 NVFQPVDQLPEDLIPSSIQVLKFSGKYLKLEQDKAYFDWPGFKTAIDNYTGEDLSFDKYDQSTINQQSQEVGAMVDKIAKFLHDAFAAVVDLSKLAAIILNTFTNLEEESSSGFLQFNTNNVKKNSSWEYRVLFSVPFGDNAPSYFYSLVTTILITADIEEKTGWWGLTSSTKKNFAVQIDALELVVKKGFKAP  216
               SCOP domains d1pp6e_ E: Volvatoxin A2                                                                                                                                                                           SCOP domains
               CATH domains 1pp6E00 E:4005-4198 Delta-endotoxin Cytb                                                                                                                                                           CATH domains
           Pfam domains (1) ----------------------------Bac_thur_toxin-1pp6E01 E:4033-4193                                                                                                                               ----- Pfam domains (1)
           Pfam domains (2) ----------------------------Bac_thur_toxin-1pp6E02 E:4033-4193                                                                                                                               ----- Pfam domains (2)
           Pfam domains (3) ----------------------------Bac_thur_toxin-1pp6E03 E:4033-4193                                                                                                                               ----- Pfam domains (3)
           Pfam domains (4) ----------------------------Bac_thur_toxin-1pp6E04 E:4033-4193                                                                                                                               ----- Pfam domains (4)
           Pfam domains (5) ----------------------------Bac_thur_toxin-1pp6E05 E:4033-4193                                                                                                                               ----- Pfam domains (5)
         Sec.struct. author ...eeee..hhhhhhhhhhhhhhhhh.............hhhhhh........eeeeeeeeeee--------.hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..eeeee......eeeeeeeeeeee.......eeeeeeeeeeeee....hhhhh..........eeeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1pp6 E 4005 NVFQPVDQLPEDLIPSSIQVLKFSGKYLKLEQDKAYFDWPGFKTAIDNYTGEDLSFDKYDQSTI--------AMVDKIAKFLHDAFAAVVDLSKLAAIILNTFTNLEEESSSGFLQFNTNNVKKNSSWEYRVLFSVPFGDNAPSYFYSLVTTILITADIEEKTGWWGLTSSTKKNFAVQIDALELVVKKGFKAP 4198
                                  4014      4024      4034      4044      4054      4064   |     -  |   4084      4094      4104      4114      4124      4134      4144      4154      4164      4174      4184      4194    
                                                                                        4068     4077
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 5)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 5)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 5)

Asymmetric Unit
(-)
Clan: no clan defined [family: Bac_thur_toxin] (5)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E   (Q6USC4_9AGAR | Q6USC4)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q6USC4_9AGAR | Q6USC4: 1pp0 1vcy 1vgf

(-) Related Entries Specified in the PDB File

1pp0 VVA2 (INGOT CRYSTAL FORM)
1vcy VVA2 ISOFORM
1vgf VVA2 (DIAMOND CRYSTAL FORM)