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Title :  STRUCTURE AND TOPOLOGY OF A PEPTIDE SEGMENT OF THE 6TH TRANSMEMBRANE DOMAIN OF THE SACCHAROMYCES CEREVISIAE ALPHA-FACTOR RECEPTOR IN PHOSPHOLIPID BILAYERS
 
Authors :  K. G. Valentine, S. -F. Liu, F. M. Marassi, G. Veglia, A. A. Nevzorov, S. J. Opella, F. -X. Ding, S. -H. Wang, B. Arshava, J. M. Becker, F. Naide
Date :  02 Jun 03  (Deposition) - 16 Sep 03  (Release) - 24 Feb 09  (Revision)
Method :  SOLID-STATE NMR
Resolution :  NOT APPLICABLE
Chains :  Asym. Unit :  A
Keywords :  Alpha Helix, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. G. Valentine, S. -F. Liu, F. M. Marassi, G. Veglia, S. J. Opella, F. -X. Ding, S. -H. Wang, B. Arshava, J. M. Becker, F. Naider
Structure And Topology Of A Peptide Segment Of The 6Th Transmembrane Domain Of The Saccharomyces Cerevisiae Alpha-Factor Receptor In Phospholipid Bilayers
Biopolymers V. 59 243 2001 (for further references see the PDB file header)

(-) Compounds

Molecule 1 - PHEROMONE ALPHA FACTOR RECEPTOR
    ChainsA
    EngineeredYES
    MutationYES
    Other DetailsTHIS SEQUENCE OCCURS NATURALLY IN A PORTION OF THE 6TH TRANSMEMBRANE DOMAIN OF THE ALPHA FACTOR RECEPTOR OF SACCHAROMYCES CEREVISIAE. 15N SELECTIVELY LABELED FMOC-LEU, -ALA, -PHE, -VAL, -ILE WERE USED.
    SyntheticYES

 Structural Features

(-) Chains, Units

  
Asymmetric Unit 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1PJD)

(-) Sites  (0, 0)

(no "Site" information available for 1PJD)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1PJD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1PJD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1PJD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1PJD)

(-) Exons   (0, 0)

(no "Exon" information available for 1PJD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:15
 aligned with STE2_YEAST | D6VTK4 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:15
                                   263     
           STE2_YEAST   254 SLLVPSIIFILAYSL 268
               SCOP domains d1pjda_ A:      SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                 1pjd A   3 SLLVPSIIFILAYSL  17
                                    12     

Chain A from PDB  Type:PROTEIN  Length:15
 aligned with STE2_YEASX | P0CI39 from UniProtKB/Swiss-Prot  Length:431

    Alignment length:15
                                   263     
           STE2_YEASX   254 SLLVPSIIFILAYSL 268
               SCOP domains d1pjda_ A:      SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                 1pjd A   3 SLLVPSIIFILAYSL  17
                                    12     

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Peptides (792)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1PJD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1PJD)

(-) Gene Ontology  (19, 27)

Asymmetric Unit(hide GO term definitions)
Chain A   (STE2_YEAST | D6VTK4)
molecular function
    GO:0004930    G-protein coupled receptor activity    Combining with an extracellular signal and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.
    GO:0004934    mating-type alpha-factor pheromone receptor activity    Combining with the mating-type alpha-factor pheromone to initiate a change in cell activity.
    GO:0004932    mating-type factor pheromone receptor activity    Combining with a mating-type factor pheromone to initiate a change in cell activity.
    GO:0005550    pheromone binding    Interacting selectively and non-covalently with a pheromone, a substance, or characteristic mixture of substances, that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process.
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
biological process
    GO:0007186    G-protein coupled receptor signaling pathway    A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576).
    GO:0030031    cell projection assembly    Formation of a prolongation or process extending from a cell, e.g. a flagellum or axon.
    GO:0000755    cytogamy    During conjugation with cellular fusion, the process resulting in creating a single cell from complementary mating types. The localized remodeling and dissolution of external protective structures allow the fusion of the plasma membranes and cytoplasmic mixing. An example of this process is found in Saccharomyces cerevisiae.
    GO:0000750    pheromone-dependent signal transduction involved in conjugation with cellular fusion    A signal transduction process resulting in the relay, amplification or dampening of a signal generated in response to pheromone exposure in organisms that undergo conjugation with cellular fusion. An example of this process is found in Saccharomyces cerevisiae.
    GO:0031139    positive regulation of conjugation with cellular fusion    Any process that increases the rate or frequency of conjugation with cellular fusion.
    GO:0051260    protein homooligomerization    The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
    GO:0035624    receptor transactivation    The process in which a receptor is activated by another receptor. Receptor transactivation can occur through different mechanisms and includes cross-talk between signaling pathways where one receptor activates a receptor for a different ligand, and also activation of subunits within a receptor oligomer.
    GO:0019236    response to pheromone    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0038038    G-protein coupled receptor homodimeric complex    A protein complex that contains two G-protein coupled receptors (GPCRs) of the same subtype. Formation of a GPCR homodimer may be important for the transport of newly formed receptors to the cell surface, and the function of the receptor.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain A   (STE2_YEASX | P0CI39)
molecular function
    GO:0004930    G-protein coupled receptor activity    Combining with an extracellular signal and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.
    GO:0004932    mating-type factor pheromone receptor activity    Combining with a mating-type factor pheromone to initiate a change in cell activity.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
biological process
    GO:0007186    G-protein coupled receptor signaling pathway    A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576).
    GO:0019236    response to pheromone    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        STE2_YEAST | D6VTK42k9p
        STE2_YEASX | P0CI392k9p

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