1PHH - JenaLib

Asymmetric Unit (Jmol Viewer)

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Title :   CRYSTAL STRUCTURE OF P-HYDROXYBENZOATE HYDROXYLASE COMPLEXED WITH ITS REACTION PRODUCT 3,4-DIHYDROXYBENZOATE

Authors :   H. A. Schreuder, J. Drenth

Date :   04 Nov 87 (Deposition) - 16 Apr 88 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. A. Schreuder, J. M. Van Der Laan, W. G. Hol, J. Drenth
Crystal Structure Of P-Hydroxybenzoate Hydroxylase Complexe With Its Reaction Product 3, 4-Dihydroxybenzoate.
J. Mol. Biol. V. 199 637 1988
PubMed-ID: 3351945 | Reference-DOI: 10.1016/0022-2836(88)90307-5
(for further references see the PDB file header)

Molecule 1 - P-HYDROXYBENZOATE HYDROXYLASE
	Chains	:	A
	EC Number	:	1.14.13.2
	Engineered	:	YES
	Organism Scientific	:	PSEUDOMONAS FLUORESCENS
	Organism Taxid	:	294

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 2)

No.	Name	Count	Type	Full Name
1	DHB	1	Ligand/Ion	3,4-DIHYDROXYBENZOIC ACID
2	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	DHB	2	Ligand/Ion	3,4-DIHYDROXYBENZOIC ACID
2	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ILE A:8 , GLY A:9 , GLY A:11 , SER A:13 , LEU A:31 , GLU A:32 , ARG A:33 , ARG A:42 , ARG A:44 , ALA A:45 , GLY A:46 , VAL A:47 , GLN A:102 , CYS A:158 , ASP A:159 , ILE A:164 , ASP A:286 , ALA A:296 , LYS A:297 , GLY A:298 , LEU A:299 , ASN A:300 , DHB A:396 , HOH A:401 , HOH A:441 , HOH A:480	BINDING SITE FOR RESIDUE FAD A 395
2	AC2	SOFTWARE	ARG A:44 , TRP A:185 , LEU A:199 , TYR A:201 , LEU A:210 , SER A:212 , ARG A:214 , TYR A:222 , PRO A:293 , THR A:294 , FAD A:395	BINDING SITE FOR RESIDUE DHB A 396

(no "SS Bond" information available for 1PHH)

Asymmetric Unit

No.	Residues
1	Glu A:274	-	Pro A:275

(no "SAP(SNP)/Variant" information available for 1PHH)

(no "PROSITE Motif" information available for 1PHH)

(no "Exon" information available for 1PHH)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:394
 aligned with PHHY_PSEFL | P00438 from UniProtKB/Swiss-Prot  Length:394

    Alignment length:394
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390    
           PHHY_PSEFL     1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSATRSRYYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAICLRRIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGSEAGLATIAENYVGLPYEEIE 394
               SCOP domains d1phha1 A:1-173,A:276-394 p-Hydroxybenzoate hydroxylase, PHBH                                                                                                                d1phha2 A:174-275 p-Hydroxybenzoate hydroxylase (PHBH)                                                d1phha1 A:1-173,A:276-394 p-Hydroxybenzoate hydroxylase, PHBH                                                           SCOP domains
               CATH domains 1phhA01 A:1-72,A:96-180,A:269-351  [code=3.50.50.60, no name defined]   1phhA02                1phhA01 A:1-72,A:96-180,A:269-351  [code=3.50.50.60, no name defined]                1phhA02 A:73-95,A:181-268,A:352-388 D-Amino Acid Oxidase, subunit A, domain 2           1phhA01 A:1-72,A:96-180,A:269-351  [code=3.50.50.60, no name defined]              1phhA02 A:73-95,A:181-268,A:352-388  ------ CATH domains
               Pfam domains -FAD_binding_3-1phhA01 A:2-343                                                                                                                                                                                                                                                                                                                         --------------------------------------------------- Pfam domains
         Sec.struct. author ee..eeee...hhhhhhhhhhhhh...eeee......hhhh.....eee...hhhhh.....hhhhhh.eee..eeeee...eee..hhhh.....eee..hhhhhhhhhhhhh.....ee...eeeeee.......eeeee....eeeee..eeee........hhh......eeeeee...eeeeeee........eeeeee..eeeeeeeee..eeeeeeee...........hhhhhhhhh..hhhhhhh......eee.....eeeeee..ee..eee.....ee........hhhhhhhhhhhhhhhhhhhh....hhh..hhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh...hhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1phh A   1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSATRSRYYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAICLRRIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGSEAGLATIAENYVGLPYEEIE 394
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: D-Amino Acid Oxidase; Chain A, domain 2 (80)

Homologous Superfamily: D-Amino Acid Oxidase, subunit A, domain 2 (80)

Pseudomonas fluorescens. Organism_taxid: 294 (8)

1phhA02

A:73-95,A:181-268,A:352-388

Architecture: 3-Layer(bba) Sandwich (528)

Topology: FAD/NAD(P)-binding domain (373)

Homologous Superfamily: [code=3.50.50.60, no name defined] (373)

Pseudomonas fluorescens. Organism_taxid: 294 (9)

1phhA01

A:1-72,A:96-180,A:269-351

Asymmetric Unit

Clans(

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Families(

)

Organisms( (-)

)

Clan: NADP_Rossmann (1239)

Family: FAD_binding_3 (21)

Pseudomonas fluorescens (7)

FAD_binding_3-1phhA01

A:2-343

Asymmetric Unit(hide GO term definitions)

Chain A (PHHY_PSEFL | P00438)

molecular function
	GO:0018659	4-hydroxybenzoate 3-monooxygenase activity	Catalysis of the reaction: 4-hydroxybenzoate + NADPH + H+ + O2 = protocatechuate + NADP+ + H2O.
	GO:0071949	FAD binding	Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
	GO:0050660	flavin adenine dinucleotide binding	Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
	GO:0004497	monooxygenase activity	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0019439	aromatic compound catabolic process	The chemical reactions and pathways resulting in the breakdown of aromatic compounds, any substance containing an aromatic carbon ring.
	GO:0043639	benzoate catabolic process	The chemical reactions and pathways resulting in the breakdown of benzoate, the anion of benzoic acid (benzenecarboxylic acid), a fungistatic compound widely used as a food preservative; it is conjugated to glycine in the liver and excreted as hippuric acid.
	GO:0043640	benzoate catabolic process via hydroxylation	The chemical reactions and pathways resulting in the breakdown of benzoate, by its hydroxylation to cis-1,2-dihydroxybenzoate followed by dehydrogenation to catechol.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		Glu A:274 - Pro A:275	[ RasMol ]

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	1phh
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(no "Related Entries Specified in the PDB File" available for 1PHH)

Description

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Ligands, Modified Residues, Ions (2, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

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SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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