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(-) Description

Title :  THE SOLUTION STRUCTURE OF HIGH PLANT PARSLEY [2FE-2S] FERREDOXIN, NMR, 18 STRUCTURES
 
Authors :  S. -C. Im, G. Liu, C. Luchinat, A. G. Sykes, I. Bertini
Date :  05 May 98  (Deposition) - 11 May 99  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (18x)
Keywords :  [2Fe-2S] Ferredoxin, Solution Structure, Paramagnetism, Nuclear Relaxation, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. C. Im, G. Liu, C. Luchinat, A. G. Sykes, I. Bertini
The Solution Structure Of Parsley [2Fe-2S]Ferredoxin.
Eur. J. Biochem. V. 258 465 1998
PubMed-ID: 9874213  |  Reference-DOI: 10.1046/J.1432-1327.1998.2580465.X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FERREDOXIN
    Chains: A
    EC Number: 1.7.7.2
    Organ: LEAVES
    Organism Common: PARSLEY
    Organism Scientific: PETROSELINUM CRISPUM
    Organism Taxid: 4043

 Structural Features

(-) Chains, Units

  
NMR Structure (18x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1FES1Ligand/IonFE2/S2 (INORGANIC) CLUSTER

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:38 , CYS A:39 , GLY A:42 , CYS A:44 , CYS A:47 , CYS A:77 , HIS A:78BINDING SITE FOR RESIDUE FES A 97
2FESUNKNOWNCYS A:39 , ALA A:41 , CYS A:47 , CYS A:77IRON BIND SITE.

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1PFD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1PFD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1PFD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1PFD)

(-) Exons   (0, 0)

(no "Exon" information available for 1PFD)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:96
 aligned with Q7M1S1_PETCR | Q7M1S1 from UniProtKB/TrEMBL  Length:96

    Alignment length:96
                                    10        20        30        40        50        60        70        80        90      
          Q7M1S1_PETCR    1 ATYNVKLITPDGEVEFKCDDDVYVLDQAEEEGIDIPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMDAGYVLTCHAYPTSDVVIETHKEEEIV 96
               SCOP domains d1pfda_ A: 2Fe-2S ferredoxin                                                                     SCOP domains
               CATH domains 1pfdA00 A:1-96  [code=3.10.20.30, no name defined]                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee.....eeeee.......hhhhhh................eeeeee............hhhhhh.eee..........eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                  1pfd A  1 ATYNVKLITPDGEVEFKCDDDVYVLDQAEEEGIDIPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMDAGYVLTCHAYPTSDVVIETHKEEEIV 96
                                    10        20        30        40        50        60        70        80        90
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1PFD)

(-) Gene Ontology  (5, 5)

NMR Structure(hide GO term definitions)
Chain A   (Q7M1S1_PETCR | Q7M1S1)
molecular function
    GO:0051537    2 iron, 2 sulfur cluster binding    Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0022900    electron transport chain    A process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.

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