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(-) Description

Title :  CRYSTAL STRUCTURE OF THE NUCLEOCAPSID PROTEIN OF PORCINE REPRODUCTIVE AND RESPIRATORY SYNDROME VIRUS (PRRSV)
 
Authors :  D. N. P. Doan, T. Dokland
Date :  29 Apr 03  (Deposition) - 25 Nov 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Virus, Nucleocapsid, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. N. P. Doan, T. Dokland
Structure Of The Nucleocapsid Protein Of Porcine Reproductive And Respiratory Syndrome Virus.
Structure V. 11 1445 2003
PubMed-ID: 14604534  |  Reference-DOI: 10.1016/J.STR.2003.09.018
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NUCLEOCAPSID PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET14B
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: CAPSID-FORMING DOMAIN
    Gene: ORF7
    Organism Scientific: PORCINE RESPIRATORY AND REPRODUCTIVE SYNDROME VIRUS
    Organism Taxid: 28344

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1P65)

(-) Sites  (0, 0)

(no "Site" information available for 1P65)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1P65)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1P65)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1P65)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1P65)

(-) Exons   (0, 0)

(no "Exon" information available for 1P65)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:57
 aligned with Q9YJI1_PRRSV | Q9YJI1 from UniProtKB/TrEMBL  Length:123

    Alignment length:57
                                    71        81        91       101       111       
         Q9YJI1_PRRSV    62 DVRHHFTPSERQLCLSSIQTAFNQGAGTCTLSDSGRISYTVEFSLPTHHTVRLIRVT 118
               SCOP domains d1p65a_ A: Arterivirus nucleocapsid protein               SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh..eeee.....eeeeeee..hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                 1p65 A  11 DVRHHFTPSERQLCLSSIQTAFNQGAGTCTLSDSGRISYTVEFSLPTHHTVRLIRVT  67
                                    20        30        40        50        60       


Chain B from PDB  Type:PROTEIN  Length:57
 aligned with Q9YJI1_PRRSV | Q9YJI1 from UniProtKB/TrEMBL  Length:123

    Alignment length:57
                                    71        81        91       101       111       
         Q9YJI1_PRRSV    62 DVRHHFTPSERQLCLSSIQTAFNQGAGTCTLSDSGRISYTVEFSLPTHHTVRLIRVT 118
               SCOP domains d1p65b_ B: Arterivirus nucleocapsid protein               SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh..eeee.....eeeeeee..hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                 1p65 B  11 DVRHHFTPSERQLCLSSIQTAFNQGAGTCTLSDSGRISYTVEFSLPTHHTVRLIRVT  67
                                    20        30        40        50        60
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1P65)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1P65)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q9YJI1_PRRSV | Q9YJI1)
cellular component
    GO:0019013    viral nucleocapsid    The complete protein-nucleic acid complex that is the packaged form of the genome in a virus particle.

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 Related Entries

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