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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN ORNITHINE TRANSCARBAMOYLASE COMPLEXED WITH N-PHOSPHONACETYL-L-ORNITHINE
 
Authors :  D. Shi, H. Morizono, Y. Ha, M. Aoyagi, N. Tuchman, N. M. Allewell
Date :  06 Oct 98  (Deposition) - 06 Oct 99  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Transcarbamoylase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. Shi, H. Morizono, Y. Ha, M. Aoyagi, M. Tuchman, N. M. Allewell
1. 85-A Resolution Crystal Structure Of Human Ornithine Transcarbamoylase Complexed With N-Phosphonacetyl-L-Ornithine. Catalytic Mechanism And Correlation With Inherited Deficiency.
J. Biol. Chem. V. 273 34247 1998
PubMed-ID: 9852088  |  Reference-DOI: 10.1074/JBC.273.51.34247

(-) Compounds

Molecule 1 - PROTEIN (ORNITHINE TRANSCARBAMOYLASE)
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPETOTCII
    Expression System Taxid562
    Expression System VectorPET 21A+
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsN-PHOSPHONACETYL-L-ORNITHINE BIND ACTIVE SITE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (3x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1PAO1Ligand/IonN-(PHOSPHONOACETYL)-L-ORNITHINE
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1PAO3Ligand/IonN-(PHOSPHONOACETYL)-L-ORNITHINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:90 , THR A:91 , ARG A:92 , THR A:93 , HIS A:117 , ARG A:141 , LEU A:163 , HIS A:168 , ASN A:198 , ASN A:199 , ASP A:263 , SER A:267 , MET A:268 , LEU A:304 , ARG A:330 , HOH A:381 , HOH A:385BINDING SITE FOR RESIDUE PAO A 355

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1OTH)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Leu A:304 -Pro A:305

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (116, 116)

Asymmetric Unit (116, 116)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
001UniProtVAR_004844G39COTC_HUMANDisease (OTCD)72554306AG39C
002UniProtVAR_004845R40COTC_HUMANDisease (OTCD)72554307AR40C
003UniProtVAR_004846R40HOTC_HUMANDisease (OTCD)72554308AR40H
004UniProtVAR_004847L43FOTC_HUMANPolymorphism72554309AL43F
005UniProtVAR_004848T44IOTC_HUMANDisease (OTCD)72554310AT44I
006UniProtVAR_004849L45POTC_HUMANDisease (OTCD)72554312AL45P
007UniProtVAR_004850L45VOTC_HUMANDisease (OTCD)72554311AL45V
008UniProtVAR_004851K46ROTC_HUMANPolymorphism1800321AK46R
009UniProtVAR_004852N47IOTC_HUMANDisease (OTCD)67939655AN47I
010UniProtVAR_004853G50ROTC_HUMANDisease (OTCD)67486158AG50R
011UniProtVAR_004854Y55DOTC_HUMANDisease (OTCD)72554319AY55D
012UniProtVAR_004855M56TOTC_HUMANDisease (OTCD)72554320AM56T
013UniProtVAR_004856S60LOTC_HUMANDisease (OTCD)72554323AS60L
014UniProtVAR_004857L63POTC_HUMANDisease (OTCD)72554324AL63P
015UniProtVAR_004858G79EOTC_HUMANDisease (OTCD)72554331AG79E
016UniProtVAR_004860G83DOTC_HUMANDisease (OTCD)72554337AG83D
017UniProtVAR_004861G83ROTC_HUMANDisease (OTCD)72554336AG83R
018UniProtVAR_004862E87KOTC_HUMANDisease (OTCD)72554338AE87K
019UniProtVAR_004863K88NOTC_HUMANDisease (OTCD)72554339AK88N
020UniProtVAR_004864S90ROTC_HUMANDisease (OTCD)72554342AS90R
021UniProtVAR_004865R92QOTC_HUMANDisease (OTCD)66550389AR92Q
022UniProtVAR_004866T93AOTC_HUMANDisease (OTCD)72554344AT93A
023UniProtVAR_004867R94TOTC_HUMANDisease (OTCD)72554345AR94T
024UniProtVAR_004868G100DOTC_HUMANDisease (OTCD)72554349AG100D
025UniProtVAR_004869F101LOTC_HUMANPolymorphism1133135AF101L
026UniProtVAR_004870A102EOTC_HUMANDisease (OTCD)72554350AA102E
027UniProtVAR_004871L111POTC_HUMANPolymorphism1800324AL111P
028UniProtVAR_004872H117LOTC_HUMANDisease (OTCD)66539573AH117L
029UniProtVAR_004873H117ROTC_HUMANDisease (OTCD)66539573AH117R
030UniProtVAR_004874T125MOTC_HUMANDisease (OTCD)72554356AT125M
031UniProtVAR_004875D126GOTC_HUMANDisease (OTCD)72554358AD126G
032UniProtVAR_004876R129HOTC_HUMANDisease (OTCD)66656800AR129H
033UniProtVAR_004877L139SOTC_HUMANDisease (OTCD)72556259AL139S
034UniProtVAR_010605A140POTC_HUMANDisease (OTCD)72556260AA140P
035UniProtVAR_004878R141POTC_HUMANDisease (OTCD)68026851AR141P
036UniProtVAR_004879R141QOTC_HUMANDisease (OTCD)68026851AR141Q
037UniProtVAR_004880L148FOTC_HUMANDisease (OTCD)66741318AL148F
038UniProtVAR_004881I159TOTC_HUMANDisease (OTCD)72556269AI159T
039UniProtVAR_012651I160SOTC_HUMANDisease (OTCD)67954347AI160S
040UniProtVAR_004882N161SOTC_HUMANDisease (OTCD)72556271AN161S
041UniProtVAR_004883G162ROTC_HUMANDisease (OTCD)66626662AG162R
042UniProtVAR_004884H168QOTC_HUMANDisease (OTCD)72556276AH168Q
043UniProtVAR_004885H168ROTC_HUMANDisease (OTCD)66867430AH168R
044UniProtVAR_009233I172FOTC_HUMANDisease (OTCD)72556279AI172F
045UniProtVAR_004886I172MOTC_HUMANDisease (OTCD)72556280AI172M
046UniProtVAR_004887A174POTC_HUMANDisease (OTCD)72556281AA174P
047UniProtVAR_004888D175VOTC_HUMANDisease (OTCD)68033093AD175V
048UniProtVAR_004889Y176COTC_HUMANDisease (OTCD)72556283AY176C
049UniProtVAR_004890T178MOTC_HUMANDisease (OTCD)72556284AT178M
050UniProtVAR_004892Q180HOTC_HUMANDisease (OTCD)72556287AQ180H
051UniProtVAR_004893E181GOTC_HUMANDisease (OTCD)72556290AE181G
052UniProtVAR_004894H182LOTC_HUMANDisease (OTCD)72556291AH182L
053UniProtVAR_004895Y183COTC_HUMANDisease (OTCD)72556293AY183C
054UniProtVAR_004896Y183DOTC_HUMANDisease (OTCD)72556292AY183D
055UniProtVAR_004897G188ROTC_HUMANDisease (OTCD)72556294AG188R
056UniProtVAR_009234G188VOTC_HUMANDisease (OTCD)72556295AG188V
057UniProtVAR_012652L191FOTC_HUMANDisease (OTCD)72556296AL191F
058UniProtVAR_004898S192ROTC_HUMANDisease (OTCD)72556298AS192R
059UniProtVAR_004899G195ROTC_HUMANDisease (OTCD)67294955AG195R
060UniProtVAR_004900D196VOTC_HUMANDisease (OTCD)72556300AD196V
061UniProtVAR_004901D196YOTC_HUMANDisease (OTCD)66642398AD196Y
062UniProtVAR_004902G197EOTC_HUMANDisease (OTCD)72556302AG197E
063UniProtVAR_009235G197ROTC_HUMANDisease (OTCD)72556301AG197R
064UniProtVAR_010606N198KOTC_HUMANDisease (OTCD)72558404AN198K
065UniProtVAR_004903L201POTC_HUMANDisease (OTCD)72558407AL201P
066UniProtVAR_004904H202YOTC_HUMANDisease (OTCD)72558408AH202Y
067UniProtVAR_004905S203COTC_HUMANDisease (OTCD)72558410AS203C
068UniProtVAR_012653M206IOTC_HUMANDisease (OTCD)72558413AM206I
069UniProtVAR_004906M206ROTC_HUMANDisease (OTCD)72558412AM206R
070UniProtVAR_004907S207ROTC_HUMANDisease (OTCD)72558415AS207R
071UniProtVAR_004908A208TOTC_HUMANDisease (OTCD)72558416AA208T
072UniProtVAR_004909A209VOTC_HUMANDisease (OTCD)72558417AA209V
073UniProtVAR_004910M213KOTC_HUMANDisease (OTCD)  ---AM213K
074UniProtVAR_010607H214YOTC_HUMANDisease (OTCD)72558420AH214Y
075UniProtVAR_004911Q216EOTC_HUMANDisease (OTCD)72558423AQ216E
076UniProtVAR_004912P220AOTC_HUMANDisease (OTCD)72558425AP220A
077UniProtVAR_004913P225LOTC_HUMANDisease (OTCD)67120076AP225L
078UniProtVAR_004914P225ROTC_HUMANDisease (OTCD)67120076AP225R
079UniProtVAR_004915P225TOTC_HUMANDisease (OTCD)72558428AP225T
080UniProtVAR_004916T242IOTC_HUMANDisease (OTCD)72558435AT242I
081UniProtVAR_004917L244QOTC_HUMANDisease (OTCD)72558436AL244Q
082UniProtVAR_004918T247KOTC_HUMANDisease (OTCD)72558437AT247K
083UniProtVAR_004919H255POTC_HUMANDisease (OTCD)72558440AH255P
084UniProtVAR_010608T262KOTC_HUMANDisease (OTCD)67333670AT262K
085UniProtVAR_004920D263GOTC_HUMANDisease (OTCD)72558443AD263G
086UniProtVAR_004921D263NOTC_HUMANDisease (OTCD)72558442AD263N
087UniProtVAR_004922T264AOTC_HUMANDisease (OTCD)72558444AT264A
088UniProtVAR_004923T264IOTC_HUMANDisease (OTCD)67156896AT264I
089UniProtVAR_010609W265LOTC_HUMANDisease (OTCD)72558446AW265L
090UniProtVAR_004924S267ROTC_HUMANDisease (OTCD)72558448AS267R
091UniProtVAR_004925M268TOTC_HUMANDisease (OTCD)72558449AM268T
092UniProtVAR_004926G269EOTC_HUMANDisease (OTCD)72558450AG269E
093UniProtVAR_004927Q270ROTC_HUMANPolymorphism1800328AR270R
094UniProtVAR_004929R277QOTC_HUMANDisease (OTCD)66724222AR277Q
095UniProtVAR_004930R277WOTC_HUMANDisease (OTCD)72558454AR277W
096UniProtVAR_012654L301FOTC_HUMANDisease (OTCD)72558462AL301F
097UniProtVAR_004931H302LOTC_HUMANDisease (OTCD)67993095AH302L
098UniProtVAR_004932H302QOTC_HUMANDisease (OTCD)67870244AH302Q
099UniProtVAR_004933H302YOTC_HUMANDisease (OTCD)72558463AH302Y
100UniProtVAR_004934C303ROTC_HUMANDisease (OTCD)67468335AC303R
101UniProtVAR_004935C303YOTC_HUMANDisease (OTCD)72558464AC303Y
102UniProtVAR_004936L304FOTC_HUMANDisease (OTCD)72558465AL304F
103UniProtVAR_012655P305HOTC_HUMANDisease (OTCD)67501347AP305H
104UniProtVAR_004938R320LOTC_HUMANDisease (OTCD)72558474AR320L
105UniProtVAR_010610E326KOTC_HUMANDisease (OTCD)72558476AE326K
106UniProtVAR_004939R330GOTC_HUMANDisease (OTCD)72558478AR330G
107UniProtVAR_012656T333AOTC_HUMANPolymorphism  ---AT333A
108UniProtVAR_004940A336SOTC_HUMANDisease (OTCD)72558486AA336S
109UniProtVAR_004941V337LOTC_HUMANDisease (OTCD)72558487AV337L
110UniProtVAR_004942V339LOTC_HUMANDisease (OTCD)72558488AV339L
111UniProtVAR_004943S340POTC_HUMANDisease (OTCD)72558489AS340P
112UniProtVAR_012657L341POTC_HUMANDisease (OTCD)72558490AL341P
113UniProtVAR_004944T343KOTC_HUMANDisease (OTCD)72558491AT343K
114UniProtVAR_004946Y345COTC_HUMANDisease (OTCD)72558492AY345C
115UniProtVAR_004947Y345DOTC_HUMANDisease (OTCD)66469337AY345D
116UniProtVAR_004948F354COTC_HUMANDisease (OTCD)72558495AF354C

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (116, 348)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
001UniProtVAR_004844G39COTC_HUMANDisease (OTCD)72554306AG39C
002UniProtVAR_004845R40COTC_HUMANDisease (OTCD)72554307AR40C
003UniProtVAR_004846R40HOTC_HUMANDisease (OTCD)72554308AR40H
004UniProtVAR_004847L43FOTC_HUMANPolymorphism72554309AL43F
005UniProtVAR_004848T44IOTC_HUMANDisease (OTCD)72554310AT44I
006UniProtVAR_004849L45POTC_HUMANDisease (OTCD)72554312AL45P
007UniProtVAR_004850L45VOTC_HUMANDisease (OTCD)72554311AL45V
008UniProtVAR_004851K46ROTC_HUMANPolymorphism1800321AK46R
009UniProtVAR_004852N47IOTC_HUMANDisease (OTCD)67939655AN47I
010UniProtVAR_004853G50ROTC_HUMANDisease (OTCD)67486158AG50R
011UniProtVAR_004854Y55DOTC_HUMANDisease (OTCD)72554319AY55D
012UniProtVAR_004855M56TOTC_HUMANDisease (OTCD)72554320AM56T
013UniProtVAR_004856S60LOTC_HUMANDisease (OTCD)72554323AS60L
014UniProtVAR_004857L63POTC_HUMANDisease (OTCD)72554324AL63P
015UniProtVAR_004858G79EOTC_HUMANDisease (OTCD)72554331AG79E
016UniProtVAR_004860G83DOTC_HUMANDisease (OTCD)72554337AG83D
017UniProtVAR_004861G83ROTC_HUMANDisease (OTCD)72554336AG83R
018UniProtVAR_004862E87KOTC_HUMANDisease (OTCD)72554338AE87K
019UniProtVAR_004863K88NOTC_HUMANDisease (OTCD)72554339AK88N
020UniProtVAR_004864S90ROTC_HUMANDisease (OTCD)72554342AS90R
021UniProtVAR_004865R92QOTC_HUMANDisease (OTCD)66550389AR92Q
022UniProtVAR_004866T93AOTC_HUMANDisease (OTCD)72554344AT93A
023UniProtVAR_004867R94TOTC_HUMANDisease (OTCD)72554345AR94T
024UniProtVAR_004868G100DOTC_HUMANDisease (OTCD)72554349AG100D
025UniProtVAR_004869F101LOTC_HUMANPolymorphism1133135AF101L
026UniProtVAR_004870A102EOTC_HUMANDisease (OTCD)72554350AA102E
027UniProtVAR_004871L111POTC_HUMANPolymorphism1800324AL111P
028UniProtVAR_004872H117LOTC_HUMANDisease (OTCD)66539573AH117L
029UniProtVAR_004873H117ROTC_HUMANDisease (OTCD)66539573AH117R
030UniProtVAR_004874T125MOTC_HUMANDisease (OTCD)72554356AT125M
031UniProtVAR_004875D126GOTC_HUMANDisease (OTCD)72554358AD126G
032UniProtVAR_004876R129HOTC_HUMANDisease (OTCD)66656800AR129H
033UniProtVAR_004877L139SOTC_HUMANDisease (OTCD)72556259AL139S
034UniProtVAR_010605A140POTC_HUMANDisease (OTCD)72556260AA140P
035UniProtVAR_004878R141POTC_HUMANDisease (OTCD)68026851AR141P
036UniProtVAR_004879R141QOTC_HUMANDisease (OTCD)68026851AR141Q
037UniProtVAR_004880L148FOTC_HUMANDisease (OTCD)66741318AL148F
038UniProtVAR_004881I159TOTC_HUMANDisease (OTCD)72556269AI159T
039UniProtVAR_012651I160SOTC_HUMANDisease (OTCD)67954347AI160S
040UniProtVAR_004882N161SOTC_HUMANDisease (OTCD)72556271AN161S
041UniProtVAR_004883G162ROTC_HUMANDisease (OTCD)66626662AG162R
042UniProtVAR_004884H168QOTC_HUMANDisease (OTCD)72556276AH168Q
043UniProtVAR_004885H168ROTC_HUMANDisease (OTCD)66867430AH168R
044UniProtVAR_009233I172FOTC_HUMANDisease (OTCD)72556279AI172F
045UniProtVAR_004886I172MOTC_HUMANDisease (OTCD)72556280AI172M
046UniProtVAR_004887A174POTC_HUMANDisease (OTCD)72556281AA174P
047UniProtVAR_004888D175VOTC_HUMANDisease (OTCD)68033093AD175V
048UniProtVAR_004889Y176COTC_HUMANDisease (OTCD)72556283AY176C
049UniProtVAR_004890T178MOTC_HUMANDisease (OTCD)72556284AT178M
050UniProtVAR_004892Q180HOTC_HUMANDisease (OTCD)72556287AQ180H
051UniProtVAR_004893E181GOTC_HUMANDisease (OTCD)72556290AE181G
052UniProtVAR_004894H182LOTC_HUMANDisease (OTCD)72556291AH182L
053UniProtVAR_004895Y183COTC_HUMANDisease (OTCD)72556293AY183C
054UniProtVAR_004896Y183DOTC_HUMANDisease (OTCD)72556292AY183D
055UniProtVAR_004897G188ROTC_HUMANDisease (OTCD)72556294AG188R
056UniProtVAR_009234G188VOTC_HUMANDisease (OTCD)72556295AG188V
057UniProtVAR_012652L191FOTC_HUMANDisease (OTCD)72556296AL191F
058UniProtVAR_004898S192ROTC_HUMANDisease (OTCD)72556298AS192R
059UniProtVAR_004899G195ROTC_HUMANDisease (OTCD)67294955AG195R
060UniProtVAR_004900D196VOTC_HUMANDisease (OTCD)72556300AD196V
061UniProtVAR_004901D196YOTC_HUMANDisease (OTCD)66642398AD196Y
062UniProtVAR_004902G197EOTC_HUMANDisease (OTCD)72556302AG197E
063UniProtVAR_009235G197ROTC_HUMANDisease (OTCD)72556301AG197R
064UniProtVAR_010606N198KOTC_HUMANDisease (OTCD)72558404AN198K
065UniProtVAR_004903L201POTC_HUMANDisease (OTCD)72558407AL201P
066UniProtVAR_004904H202YOTC_HUMANDisease (OTCD)72558408AH202Y
067UniProtVAR_004905S203COTC_HUMANDisease (OTCD)72558410AS203C
068UniProtVAR_012653M206IOTC_HUMANDisease (OTCD)72558413AM206I
069UniProtVAR_004906M206ROTC_HUMANDisease (OTCD)72558412AM206R
070UniProtVAR_004907S207ROTC_HUMANDisease (OTCD)72558415AS207R
071UniProtVAR_004908A208TOTC_HUMANDisease (OTCD)72558416AA208T
072UniProtVAR_004909A209VOTC_HUMANDisease (OTCD)72558417AA209V
073UniProtVAR_004910M213KOTC_HUMANDisease (OTCD)  ---AM213K
074UniProtVAR_010607H214YOTC_HUMANDisease (OTCD)72558420AH214Y
075UniProtVAR_004911Q216EOTC_HUMANDisease (OTCD)72558423AQ216E
076UniProtVAR_004912P220AOTC_HUMANDisease (OTCD)72558425AP220A
077UniProtVAR_004913P225LOTC_HUMANDisease (OTCD)67120076AP225L
078UniProtVAR_004914P225ROTC_HUMANDisease (OTCD)67120076AP225R
079UniProtVAR_004915P225TOTC_HUMANDisease (OTCD)72558428AP225T
080UniProtVAR_004916T242IOTC_HUMANDisease (OTCD)72558435AT242I
081UniProtVAR_004917L244QOTC_HUMANDisease (OTCD)72558436AL244Q
082UniProtVAR_004918T247KOTC_HUMANDisease (OTCD)72558437AT247K
083UniProtVAR_004919H255POTC_HUMANDisease (OTCD)72558440AH255P
084UniProtVAR_010608T262KOTC_HUMANDisease (OTCD)67333670AT262K
085UniProtVAR_004920D263GOTC_HUMANDisease (OTCD)72558443AD263G
086UniProtVAR_004921D263NOTC_HUMANDisease (OTCD)72558442AD263N
087UniProtVAR_004922T264AOTC_HUMANDisease (OTCD)72558444AT264A
088UniProtVAR_004923T264IOTC_HUMANDisease (OTCD)67156896AT264I
089UniProtVAR_010609W265LOTC_HUMANDisease (OTCD)72558446AW265L
090UniProtVAR_004924S267ROTC_HUMANDisease (OTCD)72558448AS267R
091UniProtVAR_004925M268TOTC_HUMANDisease (OTCD)72558449AM268T
092UniProtVAR_004926G269EOTC_HUMANDisease (OTCD)72558450AG269E
093UniProtVAR_004927Q270ROTC_HUMANPolymorphism1800328AR270R
094UniProtVAR_004929R277QOTC_HUMANDisease (OTCD)66724222AR277Q
095UniProtVAR_004930R277WOTC_HUMANDisease (OTCD)72558454AR277W
096UniProtVAR_012654L301FOTC_HUMANDisease (OTCD)72558462AL301F
097UniProtVAR_004931H302LOTC_HUMANDisease (OTCD)67993095AH302L
098UniProtVAR_004932H302QOTC_HUMANDisease (OTCD)67870244AH302Q
099UniProtVAR_004933H302YOTC_HUMANDisease (OTCD)72558463AH302Y
100UniProtVAR_004934C303ROTC_HUMANDisease (OTCD)67468335AC303R
101UniProtVAR_004935C303YOTC_HUMANDisease (OTCD)72558464AC303Y
102UniProtVAR_004936L304FOTC_HUMANDisease (OTCD)72558465AL304F
103UniProtVAR_012655P305HOTC_HUMANDisease (OTCD)67501347AP305H
104UniProtVAR_004938R320LOTC_HUMANDisease (OTCD)72558474AR320L
105UniProtVAR_010610E326KOTC_HUMANDisease (OTCD)72558476AE326K
106UniProtVAR_004939R330GOTC_HUMANDisease (OTCD)72558478AR330G
107UniProtVAR_012656T333AOTC_HUMANPolymorphism  ---AT333A
108UniProtVAR_004940A336SOTC_HUMANDisease (OTCD)72558486AA336S
109UniProtVAR_004941V337LOTC_HUMANDisease (OTCD)72558487AV337L
110UniProtVAR_004942V339LOTC_HUMANDisease (OTCD)72558488AV339L
111UniProtVAR_004943S340POTC_HUMANDisease (OTCD)72558489AS340P
112UniProtVAR_012657L341POTC_HUMANDisease (OTCD)72558490AL341P
113UniProtVAR_004944T343KOTC_HUMANDisease (OTCD)72558491AT343K
114UniProtVAR_004946Y345COTC_HUMANDisease (OTCD)72558492AY345C
115UniProtVAR_004947Y345DOTC_HUMANDisease (OTCD)66469337AY345D
116UniProtVAR_004948F354COTC_HUMANDisease (OTCD)72558495AF354C

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 1)

Asymmetric Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CARBAMOYLTRANSFERASEPS00097 Aspartate and ornithine carbamoyltransferases signature.OTC_HUMAN86-93  1A:86-93
Biological Unit 1 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CARBAMOYLTRANSFERASEPS00097 Aspartate and ornithine carbamoyltransferases signature.OTC_HUMAN86-93  3A:86-93

(-) Exons   (9, 9)

Asymmetric Unit (9, 9)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000000390071aENSE00001172202X:38211798-38212026229OTC_HUMAN1-26260--
1.2ENST000000390072ENSE00001090978X:38226544-38226682139OTC_HUMAN26-72471A:34-7239
1.3bENST000000390073bENSE00001090983X:38229049-3822913082OTC_HUMAN73-100281A:73-10028
1.4aENST000000390074aENSE00001090980X:38240595-3824068288OTC_HUMAN100-129301A:100-12930
1.5aENST000000390075aENSE00000668284X:38260528-38260681154OTC_HUMAN129-180521A:129-18052
1.6bENST000000390076bENSE00000668286X:38262871-38262993123OTC_HUMAN181-221411A:181-22141
1.7ENST000000390077ENSE00000668288X:38267995-3826804854OTC_HUMAN222-239181A:222-23918
1.8bENST000000390078bENSE00000668290X:38268129-38268278150OTC_HUMAN240-289501A:240-28950
1.9aENST000000390079aENSE00000668292X:38271115-38271252138OTC_HUMAN290-335461A:290-33546
1.10ENST0000003900710ENSE00001090979X:38280276-38280703428OTC_HUMAN336-354191A:336-35419

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:321
 aligned with OTC_HUMAN | P00480 from UniProtKB/Swiss-Prot  Length:354

    Alignment length:321
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353 
            OTC_HUMAN    34 KVQLKGRDLLTLKNFTGEEIKYMLWLSADLKFRIKQKGEYLPLLQGKSLGMIFEKRSTRTRLSTETGFALLGGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLARVYKQSDLDTLAKEASIPIINGLSDLYHPIQILADYLTLQEHYSSLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTWISMGQEEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLPRKPEEVDDEVFYSPRSLVFPEAENRKWTIMAVMVSLLTDYSPQLQKPKF 354
               SCOP domains d1otha1 A:34-184 Ornithine transcarbamoylase                                                                                                           d1otha2 A:185-354 Ornithine transcarbamoylase                                                                                                                              SCOP domains
               CATH domains 1othA01 A:34-170,A:330-345  [code=3.40.50.1370, no name defined]                                                                         1othA02 A:171-329  [code=3.40.50.1370, no name defined]                                                                                                        1othA01         --------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhh..hhhhhhhhhhhhhhhhhhh............eeeeee.....hhhhhhhhhhhh...eeeeee...........hhhhhhhhhhh..eeeee...hhhhhhhhhh...eeee.......hhhhhhhhhhhhhhh......eeeee....hhhhhhh...hhh..eeeee........hhhhhhhhhhhhhh...eeee..hhhhh....eeee........hhhhhhhhhh.......hhhhhh.....eeee..........hhhh......hhhhhhhhhhhhhhhhhhhh............ Sec.struct. author
             SAPs(SNPs) (1) -----CC--FIPRI--R----DT---L--P---------------E---D---KN-R-QAT-----DLE--------P-----L-------MG--H---------SPP------F----------TSSR-----Q---F-PVC-M-HGLC----R--FR--RVEK--PYC--IRTV---KY-E---A----L----------------I-Q--K-------P------KGAL-RTER------Q-----------------------FLRFH--------------L-----K---G--A--SL-LPP-K-C--------C SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------H----V-------------------------------------R---------------------------------R-----------------------Q--------------------------R---M----------D----V-------YR--------R------------------R-------------------------------------NI------------W------------------------QY-----------------------------------------D--------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------Y---------------------------------------------------- SAPs(SNPs) (3)
                    PROSITE ----------------------------------------------------CARBAMOY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: A:34-72 UniProt: 26-72  Exon 1.3b  PDB: A:73-100    ----------------------------Exon 1.5a  PDB: A:129-180 UniProt: 129-180          Exon 1.6b  PDB: A:181-221                Exon 1.7          Exon 1.8b  PDB: A:240-289 UniProt: 240-289        Exon 1.9a  PDB: A:290-335 UniProt: 290-335    Exon 1.10           Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------Exon 1.4a  PDB: A:100-129     --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1oth A  34 KVQLKGRDLLTLKNFTGEEIKYMLWLSADLKFRIKQKGEYLPLLQGKSLGMIFEKRSTRTRLSTETGFALLGGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLARVYKQSDLDTLAKEASIPIINGLSDLYHPIQILADYLTLQEHYSSLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLPRKPEEVDDEVFYSPRSLVFPEAENRKWTIMAVMVSLLTDYSPQLQKPKF 354
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1OTH)

(-) Gene Ontology  (28, 28)

Asymmetric Unit(hide GO term definitions)
Chain A   (OTC_HUMAN | P00480)
molecular function
    GO:0016597    amino acid binding    Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
    GO:0016743    carboxyl- or carbamoyltransferase activity    Catalysis of the transfer of a carboxyl- or carbamoyl group from one compound (donor) to another (acceptor).
    GO:0004585    ornithine carbamoyltransferase activity    Catalysis of the reaction: carbamoyl phosphate + L-ornithine = phosphate + L-citrulline.
    GO:0042301    phosphate ion binding    Interacting selectively and non-covalently with phosphate.
    GO:0005543    phospholipid binding    Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0097272    ammonia homeostasis    Any biological process involved in the maintenance of an internal steady state of ammonia.
    GO:0055081    anion homeostasis    Any process involved in the maintenance of an internal steady state of anions within an organism or cell.
    GO:0006526    arginine biosynthetic process    The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
    GO:0042450    arginine biosynthetic process via ornithine    The chemical reactions and pathways resulting in the formation of arginine (2-amino-5-guanidinopentanoic acid) via the intermediate compound ornithine.
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0006520    cellular amino acid metabolic process    The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
    GO:0019240    citrulline biosynthetic process    The chemical reactions and pathways resulting in the formation of citrulline, N5-carbamoyl-L-ornithine, an alpha amino acid not found in proteins.
    GO:0001889    liver development    The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes.
    GO:0007494    midgut development    The process whose specific outcome is the progression of the midgut over time, from its formation to the mature structure. The midgut is the middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine.
    GO:0006593    ornithine catabolic process    The chemical reactions and pathways resulting in the breakdown of ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis.
    GO:0006591    ornithine metabolic process    The chemical reactions and pathways involving ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis.
    GO:0070207    protein homotrimerization    The formation of a protein homotrimer, a macromolecular structure consisting of three noncovalently associated identical subunits.
    GO:0070781    response to biotin    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotin stimulus.
    GO:0042493    response to drug    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
    GO:0032868    response to insulin    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms.
    GO:0031667    response to nutrient levels    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients.
    GO:0010043    response to zinc ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus.
    GO:0000050    urea cycle    The sequence of reactions by which arginine is synthesized from ornithine, then cleaved to yield urea and regenerate ornithine. The overall reaction equation is NH3 + CO2 + aspartate + 3 ATP + 2 H2O = urea + fumarate + 2 ADP + 2 phosphate + AMP + diphosphate.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005759    mitochondrial matrix    The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OTC_HUMAN | P004801c9y 1ep9 1fb5 1fvo

(-) Related Entries Specified in the PDB File

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