Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF CDP-TYVELOSE 2-EPIMERASE COMPLEXED WITH NAD AND CDP
 
Authors :  N. M. Koropatkin, H. Liu, H. M. Holden
Date :  14 Mar 03  (Deposition) - 26 Aug 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  B,D  (1x)
Biol. Unit 3:  A,C  (1x)
Keywords :  Rossmann Fold, Short-Chain Dehydrogenase/Reductase, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. M. Koropatkin, H. W. Liu, H. M. Holden
High Resolution X-Ray Structure Of Tyvelose Epimerase From Salmonella Typhi
J. Biol. Chem. V. 278 20874 2003
PubMed-ID: 12642575  |  Reference-DOI: 10.1074/JBC.M301948200

(-) Compounds

Molecule 1 - CDP-TYVELOSE-2-EPIMERASE
    Chains: A, B, C, D
    EC Number: 5.1.3.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28A
    Expression System Strain: ROSETTA(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RFBE OR STY2298
    Organism Scientific: SALMONELLA TYPHI
    Organism Taxid: 601

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): ABCD
Biological Unit 2 (1x):  B D
Biological Unit 3 (1x): A C 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1CDP4Ligand/IonCYTIDINE-5'-DIPHOSPHATE
2NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1CDP4Ligand/IonCYTIDINE-5'-DIPHOSPHATE
2NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1CDP2Ligand/IonCYTIDINE-5'-DIPHOSPHATE
2NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 3 (2, 4)
No.NameCountTypeFull Name
1CDP2Ligand/IonCYTIDINE-5'-DIPHOSPHATE
2NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:8 , CYS A:10 , GLY A:11 , PHE A:12 , LEU A:13 , ASP A:32 , ASN A:33 , SER A:35 , ARG A:36 , GLY A:57 , ASP A:58 , ILE A:59 , LEU A:80 , ALA A:81 , GLY A:82 , VAL A:84 , SER A:123 , SER A:124 , TYR A:165 , LYS A:169 , HIS A:192 , MET A:195 , GLN A:206 , HOH A:1214 , HOH A:1215 , HOH A:1219 , HOH A:1234 , HOH A:1241 , HOH A:1304 , HOH A:1343 , HOH A:1431BINDING SITE FOR RESIDUE NAD A 1200
2AC2SOFTWAREASN A:126 , LYS A:127 , SER A:194 , TYR A:204 , TRP A:208 , TRP A:211 , PHE A:212 , ILE A:229 , SER A:230 , GLN A:235 , ARG A:237 , LEU A:276 , ARG A:299 , ASP A:302 , HOH A:1241 , HOH A:1276 , HOH A:1431 , HOH A:1507BINDING SITE FOR RESIDUE CDP A 1201
3AC3SOFTWAREGLY B:8 , CYS B:10 , GLY B:11 , PHE B:12 , LEU B:13 , ASP B:32 , ASN B:33 , SER B:35 , ARG B:36 , GLY B:57 , ASP B:58 , ILE B:59 , LEU B:80 , ALA B:81 , GLY B:82 , VAL B:84 , SER B:123 , SER B:124 , TYR B:165 , LYS B:169 , HIS B:192 , MET B:195 , HOH B:1309 , HOH B:1310 , HOH B:1314 , HOH B:1330 , HOH B:1406BINDING SITE FOR RESIDUE NAD B 1300
4AC4SOFTWAREASN B:126 , LYS B:127 , SER B:194 , TYR B:204 , TRP B:208 , TRP B:211 , PHE B:212 , SER B:230 , GLN B:235 , ARG B:237 , LEU B:276 , ARG B:299 , ASP B:302 , HOH B:1366 , HOH B:1367 , HOH B:1471 , HOH B:1472 , HOH B:1518 , HOH B:1546BINDING SITE FOR RESIDUE CDP B 1301
5AC5SOFTWAREGLY C:8 , CYS C:10 , GLY C:11 , PHE C:12 , LEU C:13 , ASP C:32 , ASN C:33 , SER C:35 , ARG C:36 , GLY C:57 , ASP C:58 , ILE C:59 , LEU C:80 , ALA C:81 , GLY C:82 , VAL C:84 , SER C:123 , SER C:124 , THR C:125 , TYR C:165 , LYS C:169 , HIS C:192 , MET C:195 , GLN C:206 , HOH C:1410 , HOH C:1411 , HOH C:1416 , HOH C:1430 , HOH C:1498 , HOH C:1541BINDING SITE FOR RESIDUE NAD C 1400
6AC6SOFTWAREASN C:126 , LYS C:127 , SER C:194 , TYR C:204 , TRP C:208 , TRP C:211 , PHE C:212 , ILE C:229 , SER C:230 , GLN C:235 , ARG C:237 , ARG C:299 , ASP C:302 , HOH C:1436 , HOH C:1471 , HOH C:1472 , HOH C:1543 , HOH C:1573BINDING SITE FOR RESIDUE CDP C 1401
7AC7SOFTWAREGLY D:8 , CYS D:10 , GLY D:11 , PHE D:12 , LEU D:13 , ASP D:32 , ASN D:33 , SER D:35 , ARG D:36 , GLY D:57 , ASP D:58 , ILE D:59 , LEU D:80 , ALA D:81 , GLY D:82 , VAL D:84 , SER D:123 , SER D:124 , TYR D:165 , LYS D:169 , HIS D:192 , MET D:195 , GLN D:206 , CDP D:1501 , HOH D:1503 , HOH D:1504 , HOH D:1508 , HOH D:1524 , HOH D:1619 , HOH D:1646BINDING SITE FOR RESIDUE NAD D 1500
8AC8SOFTWARELYS D:127 , SER D:194 , TYR D:204 , GLY D:207 , TRP D:208 , TRP D:211 , PHE D:212 , SER D:230 , GLN D:235 , ARG D:237 , LEU D:276 , ARG D:299 , ASP D:302 , NAD D:1500 , HOH D:1563 , HOH D:1564 , HOH D:1607 , HOH D:1643 , HOH D:1645 , HOH D:1672 , HOH D:1728BINDING SITE FOR RESIDUE CDP D 1501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ORR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ORR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ORR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ORR)

(-) Exons   (0, 0)

(no "Exon" information available for 1ORR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:338
 aligned with RFBE_SALTI | P14169 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        
           RFBE_SALTI     1 MKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSSI 338
               SCOP domains d1orra_ A: CDP-tyvelose-2-epimerase                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhh....eeee....hhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhh......eee....eee...............hhhhhhhhhhhhhhhhhhhhhhh.eeeeeee..ee..........hhhhhhhhhhhhhhh.....eeee.....eee.eehhhhhhhhhhhhhhhhhhh..eeee..hhh.eeehhhhhhhhhhhhh....eeee........ee...hhhhhhhhh.....hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1orr A   2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSSI 339
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331        


Chain B from PDB  Type:PROTEIN  Length:338
 aligned with RFBE_SALTI | P14169 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        
           RFBE_SALTI     1 MKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSSI 338
               SCOP domains d1orrb_ B: CDP-tyvelose-2-epimerase                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhh....eeee....hhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhh......eee....eee................hhhhhhhhhhhhhhhhhhhhhh.eeeeeee..ee..........hhhhhhhhhhhhhhh.....eeee.....eee.eehhhhhhhhhhhhhhhhhhh.eeeee..hhh.eeehhhhhhhhhhhhh....eeee........ee...hhhhhhhhh.....hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1orr B   2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSSI 339
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331        


Chain C from PDB  Type:PROTEIN  Length:335
 aligned with RFBE_SALTI | P14169 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        
           RFBE_SALTI     1 MKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSSI 338
               SCOP domains d1orrc_ C: CDP-tyvelose-2-epimerase                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhh..eeee....hhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhh......eee....eee................hhhhhhhhhhhhhhhhhhhhhh.eeeeeee..ee..........hhhhhhhhhhhhhhh..--.eeee.....eee.eehhhhhhhhhhhhhhhhhhh.eeeee..hhh.eeehhhhhhhhhhhhh....eeee....-...ee...hhhhhhhhh.....hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1orr C   2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGI--PFTISGNGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRE-DQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSSI 339
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221 |  |  231       241       251       261       271       281       291        |-|      311       321       331        
                                                                                                                                                                                                                                                       223  |                                                                       300 |                                     
                                                                                                                                                                                                                                                          226                                                                         302                                     


Chain D from PDB  Type:PROTEIN  Length:336
 aligned with RFBE_SALTI | P14169 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        
           RFBE_SALTI     1 MKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSSI 338
               SCOP domains d1orrd_ D: CDP-tyvelose-2-epimerase                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --Epimerase-1orrD01 D:4-267                                                                                                                                                                                                                                               ------------------------------------------------------------------------ Pfam domains (1)
           Pfam domains (2) --Epimerase-1orrD02 D:4-267                                                                                                                                                                                                                                               ------------------------------------------------------------------------ Pfam domains (2)
           Pfam domains (3) --Epimerase-1orrD03 D:4-267                                                                                                                                                                                                                                               ------------------------------------------------------------------------ Pfam domains (3)
           Pfam domains (4) --Epimerase-1orrD04 D:4-267                                                                                                                                                                                                                                               ------------------------------------------------------------------------ Pfam domains (4)
         Sec.struct. author .eeeee...hhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhh....eeee....hhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhh......eee....eee...............hhhhhhhhhhhhhhhhhhhhhhh.eeeeeee..ee..........hhhhhhhhhhhhhhh..--.eeee.....eee.eehhhhhhhhhhhhhhhhhhh.eeeee..hhh.eeehhhhhhhhhhhhh....eeee........ee...hhhhhhhhh.....hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1orr D   2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGI--PFTISGNGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSSI 339
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221 |  |  231       241       251       261       271       281       291       301       311       321       331        
                                                                                                                                                                                                                                                       223  |                                                                                                                 
                                                                                                                                                                                                                                                          226
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ORR)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (RFBE_SALTI | P14169)
molecular function
    GO:0047732    CDP-abequose epimerase activity    Catalysis of the reaction: CDP-3,6-dideoxy-D-glucose = CDP-3,6-dideoxy-D-mannose.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
biological process
    GO:0009103    lipopolysaccharide biosynthetic process    The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CDP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1orr)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1orr
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  RFBE_SALTI | P14169
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  5.1.3.-
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  RFBE_SALTI | P14169
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 1ORR)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1ORR)