1OQU - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   A PROTEIN COORDINATED TRI-NUCLEAR FE COMPLEX FORMED DURING SOAKING OF CRYSTALS OF THE RIBONUCLEOTIDE REDUCTASE R2F PROTEIN FROM CORYNEBACTERIUM AMMONIAGENES

Authors :   M. Hogbom, P. Nordlund

Date :   11 Mar 03 (Deposition) - 20 Apr 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Mineralization, Ferritin, Tri-Iron, Glutamate, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Hogbom, P. Nordlund
A Protein Carboxylate Coordinated Oxo-Centered Tri-Nuclear Iron Complex With Possible Implications For Ferritin Mineralization
Febs Lett. V. 567 179 2004
PubMed-ID: 15178319 | Reference-DOI: 10.1016/J.FEBSLET.2004.04.068
(for further references see the PDB file header)

Molecule 1 - RIBONUCLEOTIDE REDUCTASE SUBUNIT R2F
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PIG056
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	CORYNEBACTERIUM AMMONIAGENES
	Organism Taxid	:	1697
	Synonym	:	RIBONUCLEOTIDE REDUCTASE PROTEIN R2F

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 24)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	FE	20	Ligand/Ion	FE (III) ION
3	OXY	3	Ligand/Ion	OXYGEN MOLECULE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	FE	-1	Ligand/Ion	FE (III) ION
3	OXY	1	Ligand/Ion	OXYGEN MOLECULE

Biological Unit 2 (2, 3)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	FE	-1	Ligand/Ion	FE (III) ION
3	OXY	2	Ligand/Ion	OXYGEN MOLECULE

Asymmetric Unit (24, 24)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:77 , GLU A:108 , HIS A:111 , PHE A:172 , GLU A:202	BINDING SITE FOR RESIDUE FE A 1001
02	AC2	SOFTWARE	GLU A:108 , GLU A:168 , GLU A:202 , HIS A:205	BINDING SITE FOR RESIDUE FE A 1002
03	AC3	SOFTWARE	ASP B:77 , GLU B:108 , HIS B:111 , GLU B:202 , FE B:1004	BINDING SITE FOR RESIDUE FE B 1003
04	AC4	SOFTWARE	GLU B:108 , GLU B:168 , GLU B:202 , HIS B:205 , FE B:1003	BINDING SITE FOR RESIDUE FE B 1004
05	AC5	SOFTWARE	ASP C:77 , GLU C:108 , HIS C:111 , GLU C:202	BINDING SITE FOR RESIDUE FE C 1001
06	AC6	SOFTWARE	GLU C:108 , GLU C:168 , GLU C:202 , HIS C:205	BINDING SITE FOR RESIDUE FE C 1002
07	AC7	SOFTWARE	ASP D:77 , GLU D:108 , HIS D:111 , PHE D:172 , GLU D:202	BINDING SITE FOR RESIDUE FE D 1003
08	AC8	SOFTWARE	GLU D:108 , GLU D:168 , GLU D:202 , HIS D:205	BINDING SITE FOR RESIDUE FE D 1004
09	AC9	SOFTWARE	GLU A:245 , GLU A:248 , FE A:2002 , FE A:2003 , OXY A:2004 , HOH A:2063 , HOH A:2200	BINDING SITE FOR RESIDUE FE A 2001
10	BC1	SOFTWARE	GLU A:248 , FE A:2001 , FE A:2003 , OXY A:2004 , HOH A:2121 , HOH A:2192 , HOH A:2201	BINDING SITE FOR RESIDUE FE A 2002
11	BC2	SOFTWARE	GLU A:245 , FE A:2001 , FE A:2002 , OXY A:2004 , HOH A:2063 , HOH A:2201	BINDING SITE FOR RESIDUE FE A 2003
12	BC3	SOFTWARE	GLU B:248 , FE B:1006 , FE B:1007	BINDING SITE FOR RESIDUE FE B 1005
13	BC4	SOFTWARE	GLU B:248 , FE B:1005	BINDING SITE FOR RESIDUE FE B 1006
14	BC5	SOFTWARE	FE B:1005	BINDING SITE FOR RESIDUE FE B 1007
15	BC6	SOFTWARE	GLU C:245 , ASP C:324 , ASP C:326 , ASP C:328 , FE C:1009 , FE C:1010 , OXY C:1012 , HOH C:1214	BINDING SITE FOR RESIDUE FE C 1008
16	BC7	SOFTWARE	GLU C:248 , ASP C:326 , ASP C:328 , FE C:1008 , FE C:1010 , ACT C:1011 , OXY C:1012 , HOH C:1154	BINDING SITE FOR RESIDUE FE C 1009
17	BC8	SOFTWARE	GLU C:245 , GLU C:248 , ASP C:324 , FE C:1008 , FE C:1009 , ACT C:1011 , OXY C:1012 , HOH C:1188	BINDING SITE FOR RESIDUE FE C 1010
18	BC9	SOFTWARE	GLU D:248 , FE D:1014 , OXY D:1015 , HOH D:1033 , HOH D:1106 , HOH D:1127	BINDING SITE FOR RESIDUE FE D 1012
19	CC1	SOFTWARE	GLU D:245 , GLU D:248 , OXY D:1015 , HOH D:1033	BINDING SITE FOR RESIDUE FE D 1013
20	CC2	SOFTWARE	GLU D:245 , FE D:1012 , OXY D:1015 , HOH D:1127 , HOH D:1171	BINDING SITE FOR RESIDUE FE D 1014
21	CC3	SOFTWARE	GLU C:248 , ASP C:324 , ASP C:326 , FE C:1009 , FE C:1010 , OXY C:1012 , HOH C:1154 , HOH C:1163 , HOH C:1188	BINDING SITE FOR RESIDUE ACT C 1011
22	CC4	SOFTWARE	GLU A:245 , GLU A:248 , FE A:2001 , FE A:2002 , FE A:2003 , HOH A:2063 , HOH A:2121 , HOH A:2201	BINDING SITE FOR RESIDUE OXY A 2004
23	CC5	SOFTWARE	GLU C:245 , GLU C:248 , ASP C:324 , ASP C:326 , ASP C:328 , FE C:1008 , FE C:1009 , FE C:1010 , ACT C:1011	BINDING SITE FOR RESIDUE OXY C 1012
24	CC6	SOFTWARE	GLU D:245 , GLU D:248 , FE D:1012 , FE D:1013 , FE D:1014 , HOH D:1033 , HOH D:1171	BINDING SITE FOR RESIDUE OXY D 1015

(no "SS Bond" information available for 1OQU)

(no "Cis Peptide Bond" information available for 1OQU)

(no "SAP(SNP)/Variant" information available for 1OQU)

(no "PROSITE Motif" information available for 1OQU)

(no "Exon" information available for 1OQU)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:296
 aligned with O69274_CORAM | O69274 from UniProtKB/TrEMBL  Length:329

    Alignment length:296
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291      
         O69274_CORAM     2 SNEYDEYIANHTDPVKAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNGDDPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDDLGWTEDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSLS 297
               SCOP domains d1oqua_ A: Ribonucleotide reductase R2                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1oquA00 A:2-297 Ribonucleotide Reductase, subunit A                                                                                                                                                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhh.............hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh......hhhhh..hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oqu A   2 SNEYDEYIANHTDPVKAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNGDDPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDDLGWTEDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSLS 297
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291

Chain B from PDB  Type:PROTEIN  Length:296
 aligned with O69274_CORAM | O69274 from UniProtKB/TrEMBL  Length:329

    Alignment length:296
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291      
         O69274_CORAM     2 SNEYDEYIANHTDPVKAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNGDDPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDDLGWTEDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSLS 297
               SCOP domains d1oqub_ B: Ribonucleotide reductase R2                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1oquB00 B:2-297 Ribonucleotide Reductase, subunit A                                                                                                                                                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhh.............hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh......hhhhhh.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oqu B   2 SNEYDEYIANHTDPVKAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNGDDPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDDLGWTEDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSLS 297
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291

Chain C from PDB  Type:PROTEIN  Length:302
 aligned with O69274_CORAM | O69274 from UniProtKB/TrEMBL  Length:329

    Alignment length:328
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321        
         O69274_CORAM     2 SNEYDEYIANHTDPVKAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNGDDPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDDLGWTEDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSLSPNADENHDFFSGSGSSYVIGKAEDTTDDDWDF 329
               SCOP domains d1oquc_ C: Ribonucleotide reductase R2                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1oquC00 C:2-329 Ribonucleotide Reductase, subunit A                                                                                                                                                                                                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhh.............hhhhhhhhhhhhhh..hhhhh.hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh......hhhhh..hhhhhhhhh--------------------------...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oqu C   2 SNEYDEYIANHTDPVKAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNGDDPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDDLGWTEDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSLS--------------------------DDDWDF 329
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291     |   -         -         -  |     
                                                                                                                                                                                                                                                                                                                                 297                        324

Chain D from PDB  Type:PROTEIN  Length:296
 aligned with O69274_CORAM | O69274 from UniProtKB/TrEMBL  Length:329

    Alignment length:296
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291      
         O69274_CORAM     2 SNEYDEYIANHTDPVKAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNGDDPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDDLGWTEDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSLS 297
               SCOP domains d1oqud_ D: Ribonucleotide reductase R2                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1oquD00 D:2-297 Ribonucleotide Reductase, subunit A                                                                                                                                                                                                                                                      CATH domains
           Pfam domains (1) -----------Ribonuc_red_sm-1oquD01 D:13-291                                                                                                                                                                                                                                                        ------ Pfam domains (1)
           Pfam domains (2) -----------Ribonuc_red_sm-1oquD02 D:13-291                                                                                                                                                                                                                                                        ------ Pfam domains (2)
           Pfam domains (3) -----------Ribonuc_red_sm-1oquD03 D:13-291                                                                                                                                                                                                                                                        ------ Pfam domains (3)
           Pfam domains (4) -----------Ribonuc_red_sm-1oquD04 D:13-291                                                                                                                                                                                                                                                        ------ Pfam domains (4)
         Sec.struct. author ...hhhhhhhh.............hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh......hhhhh..hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oqu D   2 SNEYDEYIANHTDPVKAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNGDDPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDDLGWTEDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSLS 297
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Ferritin-like (533)

Superfamily: Ferritin-like (489)

Family: Ribonucleotide reductase-like (185)

Protein domain: Ribonucleotide reductase R2 (45)

Corynebacterium ammoniagenes [TaxId: 1697] (6)

1a	d1oqua_	A:
1b	d1oqub_	B:
1c	d1oquc_	C:
1d	d1oqud_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Ribonucleotide Reductase, subunit A (86)

Homologous Superfamily: Ribonucleotide Reductase, subunit A (86)

Corynebacterium ammoniagenes. Organism_taxid: 1697. (4)

1a	1oquC00	C:2-329
1b	1oquB00	B:2-297
1c	1oquD00	D:2-297
1d	1oquA00	A:2-297

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Ferritin (185)

Family: Ribonuc_red_sm (41)

Corynebacterium ammoniagenes (Brevibacterium ammoniagenes) (5)

1a	Ribonuc_red_sm-1oquD01	D:13-291
1b	Ribonuc_red_sm-1oquD02	D:13-291
1c	Ribonuc_red_sm-1oquD03	D:13-291
1d	Ribonuc_red_sm-1oquD04	D:13-291

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (O69274_CORAM | O69274)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	Catalysis of the reaction: 2'-deoxyribonucleoside diphosphate + thioredoxin disulfide + H2O = ribonucleoside diphosphate + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin.
biological process
	GO:0006260	DNA replication	The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
	GO:0009186	deoxyribonucleoside diphosphate metabolic process	The chemical reactions and pathways involving a deoxyribonucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with diphosphate on the sugar.
	GO:0009263	deoxyribonucleotide biosynthetic process	The chemical reactions and pathways resulting in the formation of a deoxyribonucleotide, a compound consisting of deoxyribonucleoside (a base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005971	ribonucleoside-diphosphate reductase complex	An enzyme complex composed of 2-4 or more subunits, which usually contains nonheme iron and requires ATP for catalysis. Catalyzes the formation of 2'-deoxyribonucleoside diphosphate from ribonucleoside diphosphate, using either thioredoxin disulfide or glutaredoxin disulfide as an acceptor.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		ACT	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		FE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		OXY	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]
		BC7	[ RasMol ]	+environment [ RasMol ]
		BC8	[ RasMol ]	+environment [ RasMol ]
		BC9	[ RasMol ]	+environment [ RasMol ]
		CC1	[ RasMol ]	+environment [ RasMol ]
		CC2	[ RasMol ]	+environment [ RasMol ]
		CC3	[ RasMol ]	+environment [ RasMol ]
		CC4	[ RasMol ]	+environment [ RasMol ]
		CC5	[ RasMol ]	+environment [ RasMol ]
		CC6	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1oqu)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	1oqu
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	O69274_CORAM \| O69274
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	O69274_CORAM \| O69274
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/TrEMBL
	O69274_CORAM \| O69274	:	1kgn 1kgo 1kgp 3dhz 3mjo

1kgn	R2F FROM CORYNEBACTERIUM AMMONIAGENES IN ITS OXIDISED, FE CONTAINING, FORM
1kgo	R2F FROM CORYNEBACTERIUM AMMONIAGENES IN ITS REDUCED, FE CONTAINING, FORM
1kgp	R2F FROM CORYNEBACTERIUM AMMONIAGENES IN ITS MN SUBSTITUTED FORM

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 24)

Sites (24, 24)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (1, 4)

Pfam Domains (1, 4)

Gene Ontology (8, 8)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File