1OO7 - JenaLib

Title :   DNA.RNA HYBRID DUPLEX CONTAINING A 5-PROPYNE DNA STRAND AND PURINE-RICH RNA STRAND, NMR, 4 STRUCTURES

Authors :   J. I. Gyi, D. Gao, G. L. Conn, J. O. Trent, T. Brown, A. N. Lane

Date :   03 Mar 03 (Deposition) - 11 Nov 03 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B  (4x)

Keywords :   Dna. Rna Hybrid, Purine/Pyrimidine-Rich Strands, Antisense, Dna/Rna Complex, Dna-Rna Hybrid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. I. Gyi, D. Gao, G. L. Conn, J. O. Trent, T. Brown, A. N. Lane
The Solution Structure Of A Dna*Rna Duplex Containing 5-Propynyl U And C; Comparison With 5-Me Modifications
Nucleic Acids Res. V. 31 2683 2003
PubMed-ID: 12736318 | Reference-DOI: 10.1093/NAR/GKG356
(for further references see the PDB file header)

Compounds

*Molecule 1 - 5'-R(GPAPAPGPAPGPAPAPGPC)-3'*
	Chains	:	A
	Engineered	:	YES
	Synthetic	:	YES

*Molecule 2 - 5'-D(GP(5PC)P(PDU)P(PDU)P(5PC)P(PDU) P(5PC)P(PDU)P(PDU)PC)-3'*
	Chains	:	B
	Engineered	:	YES
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 8)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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Exons (0, 0)

Sequences/Alignments

NMR Structure

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Chain A from PDB  Type:RNA  Length:10
                                         
                  1oo7 A  1 GAAGAGAAGC 10
                                    10

Chain B from PDB  Type:DNA  Length:10
                                         
                  1oo7 B  1 GcxxcxcxxC 10
                             |||||||10
                             2-5PC||| 
                              3-PDU|| 
                               4-PDU| 
                                5-5PC 
                                 6-PDU
                                  7-5PC
                                   8-PDU
                                    9-PDU

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Classification and Annotation

SCOP Domains (0, 0)

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Gene Ontology (0, 0)

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