1OJJ - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   ANATOMY OF GLYCOSYNTHESIS: STRUCTURE AND KINETICS OF THE HUMICOLA INSOLENS CEL7BE197A AND E197S GLYCOSYNTHASE MUTANTS

Authors :   V. M. -A. Ducros, C. A. Tarling, D. L. Zechel, A. M. Brzozowski, T. P. Frandsen, I. Von Ossowski, M. Schulein, S. G. Withers, G. J. Davies

Date :   10 Jul 03 (Deposition) - 07 Jan 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.40

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Hydrolase, Cellulose Degradation, Glycosynthase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   V. M. -A. Ducros, C. A. Tarling, D. L. Zechel, A. M. Brzozowski, T. P. Frandsen, I. Von Ossowski, M. Schulein, S. G. Withers, G. J. Davies
Anatomy Of Glycosynthesis: Structure And Kinetics Of The Humicola Insolens Cel7B E197A And E197S Glycosynthase Mutants
Chem. Biol. V. 10 619 2003
PubMed-ID: 12890535 | Reference-DOI: 10.1016/S1074-5521(03)00143-1

Molecule 1 - ENDOGLUCANASE I
	Chains	:	A, B
	EC Number	:	3.2.1.4
	Engineered	:	YES
	Expression System	:	ASPERGILLUS ORYZAE
	Expression System Taxid	:	5062
	Mutation	:	YES
	Organism Scientific	:	HUMICOLA INSOLENS
	Organism Taxid	:	34413
	Synonym	:	ENDO-1,4-BETA-GLUCANASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 12)

No.	Name	Count	Type	Full Name
1	BGC	2	Ligand/Ion	BETA-D-GLUCOSE
2	GAL	4	Ligand/Ion	BETA-D-GALACTOSE
3	GLC	2	Ligand/Ion	ALPHA-D-GLUCOSE
4	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
5	PCA	2	Mod. Amino Acid	PYROGLUTAMIC ACID

Biological Unit 1 (5, 6)

No.	Name	Count	Type	Full Name
1	BGC	1	Ligand/Ion	BETA-D-GLUCOSE
2	GAL	2	Ligand/Ion	BETA-D-GALACTOSE
3	GLC	1	Ligand/Ion	ALPHA-D-GLUCOSE
4	NAG	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
5	PCA	1	Mod. Amino Acid	PYROGLUTAMIC ACID

Biological Unit 2 (5, 6)

No.	Name	Count	Type	Full Name
1	BGC	1	Ligand/Ion	BETA-D-GLUCOSE
2	GAL	2	Ligand/Ion	BETA-D-GALACTOSE
3	GLC	1	Ligand/Ion	ALPHA-D-GLUCOSE
4	NAG	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
5	PCA	1	Mod. Amino Acid	PYROGLUTAMIC ACID

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:209 , ASN A:237 , ARG A:245 , GAL A:1403 , HOH A:2219	BINDING SITE FOR RESIDUE BGC A1400
02	AC2	SOFTWARE	GLN A:175 , HIS A:213 , LYS A:236 , ASN A:237 , TRP A:356 , BGC A:1400 , HOH A:2172 , HOH A:2331 , HOH A:2332	BINDING SITE FOR RESIDUE GAL A1403
03	AC3	SOFTWARE	ASN A:143 , ALA A:145 , TYR A:147 , TYR A:171 , ASP A:173 , GLN A:175 , PHE A:177 , SER A:197 , ASP A:199 , GLU A:202 , TRP A:347 , GAL A:1402 , HOH A:2330	BINDING SITE FOR RESIDUE GLC A1401
04	AC4	SOFTWARE	ARG A:108 , TYR A:147 , SER A:345 , TRP A:347 , GLC A:1401 , HOH A:2118 , HOH A:2328 , HOH A:2329 , HOH A:2330	BINDING SITE FOR RESIDUE GAL A1402
05	AC5	SOFTWARE	ASN A:247 , ASN A:300 , LYS A:301 , GLU A:302 , HOH A:2333	BINDING SITE FOR RESIDUE NAG A1404
06	AC6	SOFTWARE	ASN B:247 , ASN B:300 , LYS B:301 , GLU B:302 , HOH B:2199	BINDING SITE FOR RESIDUE NAG B1399
07	AC7	SOFTWARE	HIS B:209 , ASN B:237 , ARG B:245 , GAL B:1404	BINDING SITE FOR RESIDUE BGC B1401
08	AC8	SOFTWARE	GLN B:175 , HIS B:213 , LYS B:236 , ASN B:237 , TRP B:356 , BGC B:1401 , HOH B:2161 , HOH B:2309	BINDING SITE FOR RESIDUE GAL B1404
09	AC9	SOFTWARE	ASN B:143 , ALA B:145 , TYR B:147 , TYR B:171 , ASP B:173 , GLN B:175 , PHE B:177 , SER B:197 , ASP B:199 , GLU B:202 , TRP B:347 , GAL B:1403 , HOH B:2305	BINDING SITE FOR RESIDUE GLC B1402
10	BC1	SOFTWARE	ARG B:108 , TYR B:147 , SER B:345 , TRP B:347 , GLC B:1402 , HOH B:2305 , HOH B:2306 , HOH B:2307 , HOH B:2308	BINDING SITE FOR RESIDUE GAL B1403

Asymmetric Unit

No.	Residues
1	A:18	-	A:24
2	A:51	-	A:73
3	A:63	-	A:69
4	A:140	-	A:365
5	A:172	-	A:195
6	A:176	-	A:194
7	A:215	-	A:234
8	A:223	-	A:228
9	A:239	-	A:315
10	B:18	-	B:24
11	B:51	-	B:73
12	B:63	-	B:69
13	B:140	-	B:365
14	B:172	-	B:195
15	B:176	-	B:194
16	B:215	-	B:234
17	B:223	-	B:228
18	B:239	-	B:315

(no "Cis Peptide Bond" information available for 1OJJ)

(no "SAP(SNP)/Variant" information available for 1OJJ)

(no "PROSITE Motif" information available for 1OJJ)

(no "Exon" information available for 1OJJ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:399
 aligned with GUN1_HUMIN | P56680 from UniProtKB/Swiss-Prot  Length:402

    Alignment length:399
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390         
           GUN1_HUMIN     1 QKPGETKEVHPQLTTFRCTKRGGCKPATNFIVLDSLSHPIHRAEGLGPGGCGDWGNPPPKDVCPDVESCAKNCIMEGIPDYSQYGVTTNGTSLRLQHILPDGRVPSPRVYLLDKTKRRYEMLHLTGFEFTFDVDATKLPCGMNSALYLSEMHPTGAKSKYNPGGAYYGTGYCDAQCFVTPFINGLGNIEGKGSCCNEMDIWEANSRASHVAPHTCNKKGLYLCEGEECAFEGVCDKNGCGWNNYRVNVTDYYGRGEEFKVNTLKPFTVVTQFLANRRGKLEKIHRFYVQDGKVIESFYTNKEGVPYTNMIDDEFCEATGSRKYMELGATQGMGEALTRGMVLAMSIWWDQGGNMEWLDHGEAGPCAKGEGAPSNIVQVEPFPEVTYTNLRWGEIGSTYQ 399
               SCOP domains d1ojja_ A: Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1)                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -1ojjA00 A:2-399 1,4-Beta-D-Glucan Cellobiohydrolase I, subunit A                                                                                                                                                                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeee...eeeeeeeeeee.hhhh.eee......................hhhhhhhheee....hhhhh.eeee..eeeee...........eeeee...............eeeeeee............................hhhhhh........ee..ee..ee.....eee..........................eeehhhhhh............hhhhhh....ee......ee....eeeeeeeee.....eeeeeeeeee..eee................hhhhhhhh.hhhhhhhhhhhhhhhhhhhheeeeeeee......hhhhhhhhhh.......hhhhhhhhh...eeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ojj A   1 xKPGETKEVHPQLTTFRCTKRGGCKPATNFIVLDSLSHPIHRAEGLGPGGCGDWGNPPPKDVCPDVESCAKNCIMEGIPDYSQYGVTTNGTSLRLQHILPDGRVPSPRVYLLDKTKRRYEMLHLTGFEFTFDVDATKLPCGMNSALYLSEMHPTGAKSKYNPGGAYYGTGYCDAQCFVTPFINGLGNIEGKGSCCNSMDIWEANSRASHVAPHTCNKKGLYLCEGEECAFEGVCDKNGCGWNNYRVNVTDYYGRGEEFKVNTLKPFTVVTQFLANRRGKLEKIHRFYVQDGKVIESFYTNKEGVPYTNMIDDEFCEATGSRKYMELGATQGMGEALTRGMVLAMSIWWDQGGNMEWLDHGEAGPCAKGEGAPSNIVQVEPFPEVTYTNLRWGEIGSTYQ 399
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390         
                            |                                                                                                                                                                                                                                                                                                                                                                                                              
                            1-PCA

Chain B from PDB  Type:PROTEIN  Length:399
 aligned with GUN1_HUMIN | P56680 from UniProtKB/Swiss-Prot  Length:402

    Alignment length:399
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390         
           GUN1_HUMIN     1 QKPGETKEVHPQLTTFRCTKRGGCKPATNFIVLDSLSHPIHRAEGLGPGGCGDWGNPPPKDVCPDVESCAKNCIMEGIPDYSQYGVTTNGTSLRLQHILPDGRVPSPRVYLLDKTKRRYEMLHLTGFEFTFDVDATKLPCGMNSALYLSEMHPTGAKSKYNPGGAYYGTGYCDAQCFVTPFINGLGNIEGKGSCCNEMDIWEANSRASHVAPHTCNKKGLYLCEGEECAFEGVCDKNGCGWNNYRVNVTDYYGRGEEFKVNTLKPFTVVTQFLANRRGKLEKIHRFYVQDGKVIESFYTNKEGVPYTNMIDDEFCEATGSRKYMELGATQGMGEALTRGMVLAMSIWWDQGGNMEWLDHGEAGPCAKGEGAPSNIVQVEPFPEVTYTNLRWGEIGSTYQ 399
               SCOP domains d1ojjb_ B: Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1)                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -1ojjB00 B:2-399 1,4-Beta-D-Glucan Cellobiohydrolase I, subunit A                                                                                                                                                                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeee...eeeeeeeeeee.hhhh.eee......................hhhhhhhheee....hhhhh.eeee..eeeee...........eeeee...............eeeeeee........eeeeeee.............hhhhhh........ee..ee..ee.....eee..eeeeeee....eeeeee.......eeehhhhhh............hhhhhh....ee......ee....eeeeeeeee.....eeeeeeeeee..eee................hhhhhhhh.hhhhhhhhhhhhhhhhhhhh.eeeeeee......hhhhhhhhhh.......hhhhhhhhh...eeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ojj B   1 xKPGETKEVHPQLTTFRCTKRGGCKPATNFIVLDSLSHPIHRAEGLGPGGCGDWGNPPPKDVCPDVESCAKNCIMEGIPDYSQYGVTTNGTSLRLQHILPDGRVPSPRVYLLDKTKRRYEMLHLTGFEFTFDVDATKLPCGMNSALYLSEMHPTGAKSKYNPGGAYYGTGYCDAQCFVTPFINGLGNIEGKGSCCNSMDIWEANSRASHVAPHTCNKKGLYLCEGEECAFEGVCDKNGCGWNNYRVNVTDYYGRGEEFKVNTLKPFTVVTQFLANRRGKLEKIHRFYVQDGKVIESFYTNKEGVPYTNMIDDEFCEATGSRKYMELGATQGMGEALTRGMVLAMSIWWDQGGNMEWLDHGEAGPCAKGEGAPSNIVQVEPFPEVTYTNLRWGEIGSTYQ 399
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390         
                            1-PCA

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Distorted Sandwich (506)

Topology: 1,4-Beta-D-Glucan Cellobiohydrolase I; Chain A (34)

Homologous Superfamily: 1,4-Beta-D-Glucan Cellobiohydrolase I, subunit A (34)

Humicola insolens. Organism_taxid: 34413. (4)

1a	1ojjA00	A:2-399
1b	1ojjB00	B:2-399

(no "Pfam Domain" information available for 1OJJ)

Asymmetric Unit(hide GO term definitions)

Chain A,B (GUN1_HUMIN | P56680)

molecular function
	GO:0008810	cellulase activity	Catalysis of the endohydrolysis of (1->4)-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	Catalysis of the hydrolysis of any O-glycosyl bond.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0030245	cellulose catabolic process	The chemical reactions and pathways resulting in the breakdown of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0000272	polysaccharide catabolic process	The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Asymmetric Unit
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	1ojj
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UniProtKB/Swiss-Prot
	GUN1_HUMIN \| P56680	:	1a39 1dym 1oji 1ojk 2a39

1a39	HUMICOLA INSOLENS ENDOCELLULASE EGI S37W, P39W DOUBLE-MUTANT
1dym	HUMICOLA INSOLENS ENDOCELLULASE CEL7B (EG 1) E197A MUTANT
1oji	ANATOMY OF GLYCOSYNTHESIS: STRUCTURE AND KINETICS OF THE HUMICOLA INSOLENS CEL7BE197A AND E197S GLYCOSYNTHASE MUTANTS
1ojk	ANATOMY OF GLYCOSYNTHESIS: STRUCTURE AND KINETICS OF THE HUMICOLA INSOLENS CEL7BE197A AND E197S GLYCOSYNTHASE MUTANTS
2a39	HUMICOLA INSOLENS ENDOCELLULASE EGI NATIVE STRUCTURE

Description

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Chains, Units

Ligands, Modified Residues, Ions (5, 12)

Sites (10, 10)

SS Bonds (18, 18)

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