1OJ7 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   STRUCTURAL GENOMICS, UNKNOWN FUNCTION CRYSTAL STRUCTURE OF E. COLI K-12 YQHD

Authors :   G. Sulzenbacher, S. Perrier, V. Roig-Zamboni, F. Pagot, S. Grisel, A. Salamoni, C. Valencia, C. Bignon, R. Vincentelli, M. Tegoni, C. Cambillau

Date :   03 Jul 03 (Deposition) - 08 Jul 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,D  (1x)
Biol. Unit 2: B,C  (1x)

Keywords :   Oxidoreductase, Hypothetical Oxidoreductase, Structural Genomics, Reductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Sulzenbacher, K. Alvarez, R. H. H. Van-Den-Heuvel, C. Versluis, S. Spinelli, V. Campanacci, C. Valencia, C. Cambillau, H. Eklund, M. Tegoni
Crystal Structure Of E. Coli Alcohol Dehydrogenase Yqhd: Evidence Of A Covalently Modified Nadp Coenzyme
J. Mol. Biol. V. 342 489 2004
PubMed-ID: 15327949 | Reference-DOI: 10.1016/J.JMB.2004.07.034

Molecule 1 - HYPOTHETICAL OXIDOREDUCTASE YQHD
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector	:	PDEST17
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	83333
	Strain	:	K-12

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A			D
Biological Unit 2 (1x)	:		B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 9)

No.	Name	Count	Type	Full Name
1	BO3	2	Ligand/Ion	BORIC ACID
2	CL	1	Ligand/Ion	CHLORIDE ION
3	NZQ	3	Ligand/Ion	5,6-DIHYDROXY-NADP
4	ZN	3	Ligand/Ion	ZINC ION

Biological Unit 1 (2, 3)

No.	Name	Count	Type	Full Name
1	BO3	1	Ligand/Ion	BORIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	NZQ	2	Ligand/Ion	5,6-DIHYDROXY-NADP
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	BO3	1	Ligand/Ion	BORIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	NZQ	1	Ligand/Ion	5,6-DIHYDROXY-NADP
4	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP B:194 , HIS B:198 , HIS B:267 , HIS B:281 , NZQ B:1388	BINDING SITE FOR RESIDUE ZN B1389
2	AC2	SOFTWARE	ASP C:194 , HIS C:198 , HIS C:267 , HIS C:281 , BO3 C:1390	BINDING SITE FOR RESIDUE ZN C1388
3	AC3	SOFTWARE	GLY C:38 , GLY C:39 , SER C:40 , HOH C:2031 , HOH C:2064	BINDING SITE FOR RESIDUE CL C1389
4	AC4	SOFTWARE	ASP D:194 , HIS D:198 , HIS D:267 , HIS D:281 , LEU D:285 , NZQ D:1388	BINDING SITE FOR RESIDUE ZN D1389
5	AC5	SOFTWARE	GLY A:38 , GLY A:39 , SER A:40 , PRO A:67 , ASN A:68 , GLY A:94 , GLY A:95 , SER A:96 , ASP A:99 , THR A:138 , LEU A:139 , ALA A:141 , THR A:142 , SER A:144 , ASN A:147 , GLY A:149 , VAL A:151 , LYS A:160 , TYR A:179 , THR A:182 , LEU A:183 , GLN A:187 , ASP A:194 , HIS A:198 , HIS A:267 , HIS A:271 , HIS A:281 , HOH A:2069 , HOH A:2134 , HOH A:2170 , HOH A:2352 , HOH A:2353 , HOH A:2354 , HOH A:2355 , HOH A:2356 , HOH A:2357 , HOH A:2358 , HOH A:2359 , HOH A:2360 , HOH A:2361 , HOH A:2362 , HOH A:2363 , HOH A:2364 , HOH A:2365	BINDING SITE FOR RESIDUE NZQ A1388
6	AC6	SOFTWARE	ARG A:186 , ASN A:190 , ASP A:280 , GLN A:283 , GLY A:338 , VAL A:339	BINDING SITE FOR RESIDUE BO3 A1389
7	AC7	SOFTWARE	GLY B:38 , GLY B:39 , SER B:40 , PRO B:67 , ASN B:68 , GLY B:94 , GLY B:95 , SER B:96 , ASP B:99 , THR B:138 , LEU B:139 , ALA B:141 , THR B:142 , SER B:144 , ASN B:147 , GLY B:149 , VAL B:151 , LYS B:160 , TYR B:179 , THR B:182 , LEU B:183 , PRO B:184 , GLN B:187 , ASP B:194 , HIS B:198 , LEU B:252 , HIS B:267 , HIS B:271 , HIS B:281 , ZN B:1389 , HOH B:2083 , HOH B:2161 , HOH B:2171 , HOH B:2210 , HOH B:2417 , HOH B:2418 , HOH B:2419 , HOH B:2420 , HOH B:2421 , HOH B:2422 , HOH B:2423 , HOH B:2424 , HOH B:2425 , HOH B:2426 , HOH B:2427 , HOH B:2428	BINDING SITE FOR RESIDUE NZQ B1388
8	AC8	SOFTWARE	ASP C:194 , HIS C:198 , HIS C:267 , HIS C:281 , ZN C:1388	BINDING SITE FOR RESIDUE BO3 C1390
9	AC9	SOFTWARE	GLY D:38 , GLY D:39 , SER D:40 , PRO D:67 , ASN D:68 , GLY D:94 , GLY D:95 , SER D:96 , ASP D:99 , THR D:138 , LEU D:139 , ALA D:141 , THR D:142 , SER D:144 , ASN D:147 , GLY D:149 , VAL D:151 , LYS D:160 , TYR D:179 , THR D:182 , LEU D:183 , GLN D:187 , ASP D:194 , HIS D:198 , HIS D:267 , HIS D:271 , HIS D:281 , ZN D:1389 , HOH D:2090 , HOH D:2282 , HOH D:2283 , HOH D:2284 , HOH D:2285 , HOH D:2286 , HOH D:2287 , HOH D:2288 , HOH D:2289 , HOH D:2290 , HOH D:2292 , HOH D:2293 , HOH D:2294 , HOH D:2295 , HOH D:2296	BINDING SITE FOR RESIDUE NZQ D1388

(no "SS Bond" information available for 1OJ7)

(no "Cis Peptide Bond" information available for 1OJ7)

(no "SAP(SNP)/Variant" information available for 1OJ7)

Asymmetric Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADH_IRON_1	PS00913	Iron-containing alcohol dehydrogenases signature 1.	YQHD_ECOLI	173-201	4	A:173-201 B:173-201 C:173-201 D:173-201
2	ADH_IRON_2	PS00060	Iron-containing alcohol dehydrogenases signature 2.	YQHD_ECOLI	264-284	4	A:264-284 B:264-284 C:264-284 D:264-284

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADH_IRON_1	PS00913	Iron-containing alcohol dehydrogenases signature 1.	YQHD_ECOLI	173-201	2	A:173-201 - - D:173-201
2	ADH_IRON_2	PS00060	Iron-containing alcohol dehydrogenases signature 2.	YQHD_ECOLI	264-284	2	A:264-284 - - D:264-284

Biological Unit 2 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADH_IRON_1	PS00913	Iron-containing alcohol dehydrogenases signature 1.	YQHD_ECOLI	173-201	2	- B:173-201 C:173-201 -
2	ADH_IRON_2	PS00060	Iron-containing alcohol dehydrogenases signature 2.	YQHD_ECOLI	264-284	2	- B:264-284 C:264-284 -

(no "Exon" information available for 1OJ7)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:390
 aligned with YQHD_ECOLI | Q46856 from UniProtKB/Swiss-Prot  Length:387

    Alignment length:390
                               1                                                                                                                                                                                                                                                                                                                                                                                                  
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387
           YQHD_ECOLI     - ---MNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIQDRFAEGILLTLIEDGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRIYEAAR 387
               SCOP domains d1oj7a_ A: Hypothetical oxidoreductase yqhD                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1oj7A02 A:184-387 Dehydroquinate synthase-like - alpha domain                                                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeeeeeeee..hhhhhhhhhh....eeeeee..hhhhhhhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhh........hhhhhh..........eeeee.....hhhhh.eeeeee....eeeeee.hhhh..eeee.hhhhh..hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh....hhhhhh....hhhhhhhhhhhh...........hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADH_IRON_1  PDB: A:173-201   --------------------------------------------------------------ADH_IRON_2           ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1oj7 A  -2 KAGLNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIHDRFAEGILLTLIEDGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRIYEAAR 387
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387

Chain B from PDB  Type:PROTEIN  Length:390
 aligned with YQHD_ECOLI | Q46856 from UniProtKB/Swiss-Prot  Length:387

    Alignment length:390
                               1                                                                                                                                                                                                                                                                                                                                                                                                  
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387
           YQHD_ECOLI     - ---MNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIQDRFAEGILLTLIEDGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRIYEAAR 387
               SCOP domains d1oj7b_ B: Hypothetical oxidoreductase yqhD                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1oj7B02 B:184-387 Dehydroquinate synthase-like - alpha domain                                                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeeeeeeee..hhhhhhhhhh....eeeee...hhhhhhhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhh.......hhhhhh..........eeeee.....hhhhh.eeeeee....eeeeee.hhhh..eeeehhhhhh..hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh...hhhhhh....hhhhhhhhhhhh...........hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADH_IRON_1  PDB: B:173-201   --------------------------------------------------------------ADH_IRON_2           ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1oj7 B  -2 KAGLNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIHDRFAEGILLTLIEDGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRIYEAAR 387
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387

Chain C from PDB  Type:PROTEIN  Length:390
 aligned with YQHD_ECOLI | Q46856 from UniProtKB/Swiss-Prot  Length:387

    Alignment length:390
                               1                                                                                                                                                                                                                                                                                                                                                                                                  
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387
           YQHD_ECOLI     - ---MNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIQDRFAEGILLTLIEDGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRIYEAAR 387
               SCOP domains d1oj7c_ C: Hypothetical oxidoreductase yqhD                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1oj7C02 C:184-387 Dehydroquinate synthase-like - alpha domain                                                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeeeeeeee..hhhhhhhhh.....eeeeee..hhhhhhhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhh......hhhhhh..........eeeee.....hhhhh.eeeeee....eeeeee.hhhh..eeeehhhhhh..hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh....hhhhhh....hhhhhhhhhhhh...........hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADH_IRON_1  PDB: C:173-201   --------------------------------------------------------------ADH_IRON_2           ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1oj7 C  -2 KAGLNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIHDRFAEGILLTLIEDGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRIYEAAR 387
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387

Chain D from PDB  Type:PROTEIN  Length:390
 aligned with YQHD_ECOLI | Q46856 from UniProtKB/Swiss-Prot  Length:387

    Alignment length:390
                               1                                                                                                                                                                                                                                                                                                                                                                                                  
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387
           YQHD_ECOLI     - ---MNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIQDRFAEGILLTLIEDGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRIYEAAR 387
               SCOP domains d1oj7d_ D: Hypothetical oxidoreductase yqhD                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1oj7D02 D:184-387 Dehydroquinate synthase-like - alpha domain                                                                                                                                                CATH domains
           Pfam domains (1) -----------Fe-ADH-1oj7D01 D:9-377                                                                                                                                                                                                                                                                                                                                                           ---------- Pfam domains (1)
           Pfam domains (2) -----------Fe-ADH-1oj7D02 D:9-377                                                                                                                                                                                                                                                                                                                                                           ---------- Pfam domains (2)
           Pfam domains (3) -----------Fe-ADH-1oj7D03 D:9-377                                                                                                                                                                                                                                                                                                                                                           ---------- Pfam domains (3)
           Pfam domains (4) -----------Fe-ADH-1oj7D04 D:9-377                                                                                                                                                                                                                                                                                                                                                           ---------- Pfam domains (4)
         Sec.struct. author ......eeeeeeeeeee..hhhhhhhhhh....eeeee...hhhhhhhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhhh........hhhhhh..........eeeee.....hhhhh.eeeeee....eeeeee.hhhh..eeee.hhhhh..hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh....hhhhhh....hhhhhhhhhhhh...........hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADH_IRON_1  PDB: D:173-201   --------------------------------------------------------------ADH_IRON_2           ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1oj7 D  -2 KAGLNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIHDRFAEGILLTLIEDGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRIYEAAR 387
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Multi-domain proteins (alpha and beta) (2421)

Fold: Dehydroquinate synthase-like (30)

Superfamily: Dehydroquinate synthase-like (30)

Family: Iron-containing alcohol dehydrogenase (11)

Protein domain: Hypothetical oxidoreductase yqhD (1)

Escherichia coli [TaxId: 562] (1)

1a	d1oj7a_	A:
1b	d1oj7b_	B:
1c	d1oj7c_	C:
1d	d1oj7d_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Up-down Bundle (3216)

Topology: Dehydroquinate synthase-like, alpha domain (24)

Homologous Superfamily: Dehydroquinate synthase-like - alpha domain (24)

Escherichia coli. Organism_taxid: 83333. Strain: k-12. (1)

1a	1oj7A02	A:184-387
1b	1oj7B02	B:184-387
1c	1oj7C02	C:184-387
1d	1oj7D02	D:184-387

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: DHQS (27)

Family: Fe-ADH (12)

Escherichia coli (strain K12) (2)

1a	Fe-ADH-1oj7D01	D:9-377
1b	Fe-ADH-1oj7D02	D:9-377
1c	Fe-ADH-1oj7D03	D:9-377
1d	Fe-ADH-1oj7D04	D:9-377

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (YQHD_ECOLI | Q46856)

molecular function
	GO:0008106	alcohol dehydrogenase (NADP+) activity	Catalysis of the reaction: an alcohol + NADP+ = an aldehyde + NADPH + H+.
	GO:0018455	alcohol dehydrogenase [NAD(P)+] activity	Catalysis of the reaction: an alcohol + NAD(P)+ = an aldehyde + NAD(P)H + H+.
	GO:0033721	aldehyde dehydrogenase (NADP+) activity	Catalysis of the reaction: an aldehyde + NADP+ + H2O = an acid + NADPH + H+.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:1990002	methylglyoxal reductase (NADPH-dependent, acetol producing)	Catalysis of the reaction: H+ + methylglyoxal + NADPH <=> hydroxyacetone + NADP+.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0000302	response to reactive oxygen species	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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	1oj7
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(no "Related Entries Specified in the PDB File" available for 1OJ7)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 9)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 8)

Exons (0, 0)

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