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(-) Description

Title :  THE SOLUTION STRUCTURE OF THE DPY MODULE FROM THE DUMPY PROTEIN
 
Authors :  M. B. Wilkin, M. N. Becker, D. Mulvey, I. Phan, A. Chao, K. Cooper, H. J. Chung, I. D. Campbell, M. Baron, R. Macintyre
Date :  18 Jun 03  (Deposition) - 26 Jun 03  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (22x)
Keywords :  Structural Protein, Drosophila, Dumpy, Nmr (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. B. Wilkin, M. N. Becker, D. Mulvey, I. Phan, A. Chao, K. Cooper, H. J. Chung, I. D. Campbell, M. Baron, R. Macintyre
Drosophila Dumpy Is A Gigantic Extracellular Protein Required To Maintain Tension At Epidermal-Cuticle Attachment Sites
Curr. Biol. V. 10 559 2000
PubMed-ID: 10837220  |  Reference-DOI: 10.1016/S0960-9822(00)00482-6

(-) Compounds

Molecule 1 - DUMPY
    Chains: A
    Fragment: DPY MODULE, RESIDUES 14185-14208
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
    Synonym: CG33196-PB
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (22x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1OIG)

(-) Sites  (0, 0)

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(-) SS Bonds  (2, 2)

NMR Structure
No.Residues
1A:4 -A:16
2A:10 -A:21

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1OIG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1OIG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1OIG)

(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:24
 aligned with M9PB30_DROME | M9PB30 from UniProtKB/TrEMBL  Length:22949

    Alignment length:24
                                 14111     14121    
       M9PB30_DROME   14102 RPECVLNSDCPSNQACVNQKCRDP 14125
               SCOP domains d1oiga_ A: Dumpy         SCOP domains
               CATH domains ------------------------ CATH domains
               Pfam domains ------------------------ Pfam domains
         Sec.struct. author ..............ee....ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------ SAPs(SNPs)
                    PROSITE ------------------------ PROSITE
                 Transcript ------------------------ Transcript
               1oig A     1 RPECVLNSDCPSNQACVNQKCRDP    24
                                    10        20
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1OIG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1OIG)

(-) Gene Ontology  (17, 17)

NMR Structure(hide GO term definitions)
Chain A   (M9PB30_DROME | M9PB30)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0005201    extracellular matrix structural constituent    The action of a molecule that contributes to the structural integrity of the extracellular matrix.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0007475    apposition of dorsal and ventral imaginal disc-derived wing surfaces    The coming together of the dorsal and ventral surfaces of the imaginal disc-derived wing during the conversion of a folded single layered wing disc to a flat bilayered wing.
    GO:0040005    chitin-based cuticle attachment to epithelium    Attaching of a chitin-containing cuticle to the epithelium underlying it. An example of this process is found in Drosophila melanogaster.
    GO:0008362    chitin-based embryonic cuticle biosynthetic process    Synthesis, including the chemical reactions and pathways resulting in the formation of chitin and other components, and deposition of a chitin-based embryonic cuticle by the underlying epidermal epithelium. This tough, waterproof cuticle layer is essential to provide structural integrity of the larval body. An example of this is found in Drosophila melanogaster.
    GO:0002064    epithelial cell development    The process whose specific outcome is the progression of an epithelial cell over time, from its formation to the mature structure. An epithelial cell is a cell usually found in a two-dimensional sheet with a free surface.
    GO:0046331    lateral inhibition    Signaling between cells of equivalent developmental potential that results in these cells adopting different developmental fates. An example is the suppression by cells with a particular fate of the adoption of the same fate by surrounding cells.
    GO:0007424    open tracheal system development    The process whose specific outcome is the progression of an open tracheal system over time, from its formation to the mature structure. An open tracheal system is a respiratory system, a branched network of epithelial tubes that supplies oxygen to target tissues via spiracles. An example of this is found in Drosophila melanogaster.
    GO:0044719    regulation of imaginal disc-derived wing size    Any process that modulates the size of an imaginal disc-derived wing.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
cellular component
    GO:0031012    extracellular matrix    A structure lying external to one or more cells, which provides structural support for cells or tissues.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005578    proteinaceous extracellular matrix    A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

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