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(-) Description

Title :  THE REFINED STRUCTURE OF NUDAURELIA CAPENSIS OMEGA VIRUS
 
Authors :  C. Helgstrand, S. Munshi, J. E. Johnson, L. Liljas
Date :  26 May 03  (Deposition) - 26 Feb 04  (Release) - 17 Nov 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (60x)
Keywords :  Virus, Viral Coat, Auto-Catalytic Cleavage, Quasiequivalence, Nwv, Icosahedral Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Helgstrand, S. Munshi, J. E. Johnson, L. Liljas
The Refined Structure Of Nudaurelia Capensis Omega Virus Reveals Control Elements For A T = 4 Capsid Maturation
Virology V. 318 192 2004
PubMed-ID: 14972547  |  Reference-DOI: 10.1016/J.VIROL.2003.08.045
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NUDAURELIA CAPENSIS OMEGA VIRUS CAPSID PROTEIN
    Chains: A, B, C, D
    Organism Scientific: NUDAURELIA CAPENSIS OMEGA VIRUS
    Organism Taxid: 12541

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (60x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1MG4Ligand/IonMAGNESIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:182 , ASP A:207BINDING SITE FOR RESIDUE MG A1645
2AC2SOFTWAREASP B:182 , ASP B:207 , GLY D:330BINDING SITE FOR RESIDUE MG B1645
3AC3SOFTWAREASP C:182 , ASP C:207BINDING SITE FOR RESIDUE MG C1645
4AC4SOFTWAREASP D:182 , ASP D:207BINDING SITE FOR RESIDUE MG D1645

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1OHF)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Asp A:314 -Pro A:315
2Asp B:314 -Pro B:315
3Asp C:314 -Pro C:315
4Asp D:314 -Pro D:315

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1OHF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1OHF)

(-) Exons   (0, 0)

(no "Exon" information available for 1OHF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:539
 aligned with Q4TVT6_9VIRU | Q4TVT6 from UniProtKB/TrEMBL  Length:644

    Alignment length:539
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590         
         Q4TVT6_9VIRU    61 VITFPTNVATMPEFRSWARGKLDIDQDSIGWYFKYLDPAGATESARAVGEYSKIPDGLVKFSVDAEIREIYNEECPTVSDASIPLDGAQWSLSIISYPMFRTAYFAVANVDNKEISLDVTNDLIVWLNNLASWRDVVDSGQWFAFSDDPTWFVRIRVLHPTYDLPDPTEGLLRTVSDYRLTYKSITCEANMPTLVDQGFWIGGHYALTPIATTQNAVEGSGFVHPFNVTRPGIAAGVTLTWASMPPGGSAPSGDPAWIPDSTTQFQWRHGGFDAPTGVITYTIPRGYTMQYFDTTTNEWNGFANPDDVVTFGQTGGAAGTNATITITAPTVTLTILATTTSAANVINFRNLDAETTAASNRSEVPLPPLTFGQTAPNNPKIEQTLVKDTLGSYLVHSKMRNPVFQLTPASSFGAISFTNPGFDRNLDLPGFGGIRDSLDVNMSTAVCHFRSLSKSCSIVTKTYQGWEGVTNVNTPFGQFAHSGLLKNDEILCLADDLATRLTGVYGATDNFAAAVSAFAANMLTSVLKSEATTSVIKEL 599
               SCOP domains d1ohfa_ A: Tetraomegavirus capsid protein                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains --------------------------------------------------------1ohfA02 A:117-275,A:417-544,A:562-570  [code=2.60.120.20, no name defined]                                                                                     ---------------------------------------------------------------------------------------------------------------------------------------------1ohfA02 A:117-275,A:417-544,A:562-570  [code=2.60.120.20, no name defined]                                                      -----------------1ohfA02  ----------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhh....hhhhhhhhhhhhh.hhhhhh................eeeeeeeeeeeee...............eeeeeeee.....eeeeeeee......hhhhhhhhhhhhhh..hhhhhhhh...ee......eeeeeeehhhhhh..hhhhh......eeeeeeeeeeeeee.hhhhh..eeeeeee....eeee....eee.....eeeee......eeeee................ee.....eeeee.........eeee......eeeee....eeeeee....eeeeeeee.hhhh.eeeeeee..eeeeeee...eeeeee.eee..eee....eeeeee....hhhhhhhhh...eeeehhhhheeeee...........ee....eeeeee....hhhhh................eeeeeeeeee...eeeeeeeeeeeee......hhhhhee....hhhhhhhhhhhhhhh..eee.hhh..hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ohf A  61 VITFPTNVATMPEFRSWARGKLDIDQDSIGWYFKYLDPAGATESARAVGEYSKIPDGLVKFSVDAEIREIYNEECPTVSDASIPLDGAQWSLSIISYPMFRTAYFAVANVDNKEISLDVTNDLIVWLNNLASWRDVVDSGQWFTFSDDPTWFVRIRVLHPTYDLPDPTEGLLRTVSDYRLTYKSITCEANMPTLVDQGFWIGGHYALTPIATTQNAVEGSGFVHPFNVTRPGIAAGVTLTWASMPPGGSAPSGDPAWIPDSTTQFQWRHGGFDAPTGVITYTIPRGYTMQYFDTTTNEWNGFANPDDVVTFGQTGGAAGTNATITITAPTVTLTILATTTSAANVINFRNLDAETTAASNRSEVPLPPLTFGQTAPNNPKIEQTLVKDTLGSYLVHSKMRNPVFQLTPASSFGAISFTNPGFDRNLDLPGFGGIRDSLDVNMSTAVCHFRSLSKSCSIVTKTYQGWEGVTNVNTPFGQFAHSGLLKNDEILCLADDLATRLTGVYGATDNFAAAVLAFAANMLTSVLKSEATTSVIKEL 599
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590         


Chain A from PDB  Type:PROTEIN  Length:539
 aligned with Q90063_9VIRU | Q90063 from UniProtKB/TrEMBL  Length:644

    Alignment length:539
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590         
         Q90063_9VIRU    61 VITFPTNVATMPEFRSWARGKLDIDQDSIGWYFKYLDPAGATESARAVGEYSKIPDGLVKFSVDAEIREIYNEECPTVSDASIPLDGAQWSLSIISYPMFRTAYFAVANVDNKEISLDVTNDLIVWLNNLASWRDVVDSGQWFTFSDDPTWFVRIRVLHPTYDLPDPTEGLLRTCSDYRLTYKSITCEANMPTLVDQGFWIGGHYALTPIATTQNAVEGSGFEHPFNVTRPGIAAGVTLTWASMPPGGSAPSGDPAWIPDSTTQFQWRHGGFDAPTGVITYTIPRGYTMQYFDTTTNEWNGFANPDDVVTFGQTGGAAGTNATITITAPTVTLTILATTTSAANVINFRNLDAETTAASNRSEVPLPPLTFGQTAPNNPKIEQTLVKDTLGSYLVHSKMRNPVFQLTPASSFGAISFTNPGFDRNLDLPGFGGIRDSLDVNMSTAVCHFRSLSKSCSIVTKTYQGWEGVTNVNTPFGQFAHSGLLKNDEILCLADDLATRLTGVYGATDNFAAAVLAFAANMLTSVLKSEATTSVIKEL 599
               SCOP domains d1ohfa_ A: Tetraomegavirus capsid protein                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains --------------------------------------------------------1ohfA02 A:117-275,A:417-544,A:562-570  [code=2.60.120.20, no name defined]                                                                                     ---------------------------------------------------------------------------------------------------------------------------------------------1ohfA02 A:117-275,A:417-544,A:562-570  [code=2.60.120.20, no name defined]                                                      -----------------1ohfA02  ----------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhh....hhhhhhhhhhhhh.hhhhhh................eeeeeeeeeeeee...............eeeeeeee.....eeeeeeee......hhhhhhhhhhhhhh..hhhhhhhh...ee......eeeeeeehhhhhh..hhhhh......eeeeeeeeeeeeee.hhhhh..eeeeeee....eeee....eee.....eeeee......eeeee................ee.....eeeee.........eeee......eeeee....eeeeee....eeeeeeee.hhhh.eeeeeee..eeeeeee...eeeeee.eee..eee....eeeeee....hhhhhhhhh...eeeehhhhheeeee...........ee....eeeeee....hhhhh................eeeeeeeeee...eeeeeeeeeeeee......hhhhhee....hhhhhhhhhhhhhhh..eee.hhh..hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ohf A  61 VITFPTNVATMPEFRSWARGKLDIDQDSIGWYFKYLDPAGATESARAVGEYSKIPDGLVKFSVDAEIREIYNEECPTVSDASIPLDGAQWSLSIISYPMFRTAYFAVANVDNKEISLDVTNDLIVWLNNLASWRDVVDSGQWFTFSDDPTWFVRIRVLHPTYDLPDPTEGLLRTVSDYRLTYKSITCEANMPTLVDQGFWIGGHYALTPIATTQNAVEGSGFVHPFNVTRPGIAAGVTLTWASMPPGGSAPSGDPAWIPDSTTQFQWRHGGFDAPTGVITYTIPRGYTMQYFDTTTNEWNGFANPDDVVTFGQTGGAAGTNATITITAPTVTLTILATTTSAANVINFRNLDAETTAASNRSEVPLPPLTFGQTAPNNPKIEQTLVKDTLGSYLVHSKMRNPVFQLTPASSFGAISFTNPGFDRNLDLPGFGGIRDSLDVNMSTAVCHFRSLSKSCSIVTKTYQGWEGVTNVNTPFGQFAHSGLLKNDEILCLADDLATRLTGVYGATDNFAAAVLAFAANMLTSVLKSEATTSVIKEL 599
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590         


Chain B from PDB  Type:PROTEIN  Length:547
 aligned with Q4TVT6_9VIRU | Q4TVT6 from UniProtKB/TrEMBL  Length:644

    Alignment length:547
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       
         Q4TVT6_9VIRU    44 DNVTAAAQELGQSLDANVITFPTNVATMPEFRSWARGKLDIDQDSIGWYFKYLDPAGATESARAVGEYSKIPDGLVKFSVDAEIREIYNEECPTVSDASIPLDGAQWSLSIISYPMFRTAYFAVANVDNKEISLDVTNDLIVWLNNLASWRDVVDSGQWFAFSDDPTWFVRIRVLHPTYDLPDPTEGLLRTVSDYRLTYKSITCEANMPTLVDQGFWIGGHYALTPIATTQNAVEGSGFVHPFNVTRPGIAAGVTLTWASMPPGGSAPSGDPAWIPDSTTQFQWRHGGFDAPTGVITYTIPRGYTMQYFDTTTNEWNGFANPDDVVTFGQTGGAAGTNATITITAPTVTLTILATTTSAANVINFRNLDAETTAASNRSEVPLPPLTFGQTAPNNPKIEQTLVKDTLGSYLVHSKMRNPVFQLTPASSFGAISFTNPGFDRNLDLPGFGGIRDSLDVNMSTAVCHFRSLSKSCSIVTKTYQGWEGVTNVNTPFGQFAHSGLLKNDEILCLADDLATRLTGVYGATDNFAAAVSAFAANMLTSVLKSE 590
               SCOP domains d1ohfb_ B: Tetraomegavirus capsid protein                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------1ohfB02 B:117-276,B:417-544,B:562-566  [code=2.60.120.20, no name defined]                                                                                      --------------------------------------------------------------------------------------------------------------------------------------------1ohfB02 B:117-276,B:417-544,B:562-566  [code=2.60.120.20, no name defined]                                                      -----------------1ohfB------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh................hhhhhh........hhhhhhhhhhhhhhhhhhh................eeeeeeeeeeeee...............eeeeeeee.....eeeeeeee......hhhhhhhhhhhhhh..hhhhhhhhh..ee......eeeeeeehhhhhh..hhhhh......eeeeeeeeeeeeee.hhhhh..eeeeeee....eeee....eee.....eeee.......eeeee................ee.....eeeee.........eeee......eeeee....eeeeee....eeeeeeee.hhhh.eeeeeee..eeeeeee.......ee.eee..eee....eeeeee....hhhhhhhhh...eeee.....eeeee...........ee....eeeeee....hhhhh................eeeeeeeeee...eeeeeeeeeeeee......hhhhhee....hhhhhhhhhhhhhhh..eee.hhh..hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ohf B  44 DNVTAAAQELGQSLDANVITFPTNVATMPEFRSWARGKLDIDQDSIGWYFKYLDPAGATESARAVGEYSKIPDGLVKFSVDAEIREIYNEECPTVSDASIPLDGAQWSLSIISYPMFRTAYFAVANVDNKEISLDVTNDLIVWLNNLASWRDVVDSGQWFTFSDDPTWFVRIRVLHPTYDLPDPTEGLLRTVSDYRLTYKSITCEANMPTLVDQGFWIGGHYALTPIATTQNAVEGSGFVHPFNVTRPGIAAGVTLTWASMPPGGSAPSGDPAWIPDSTTQFQWRHGGFDAPTGVITYTIPRGYTMQYFDTTTNEWNGFANPDDVVTFGQTGGAAGTNATITITAPTVTLTILATTTSAANVINFRNLDAETTAASNRSEVPLPPLTFGQTAPNNPKIEQTLVKDTLGSYLVHSKMRNPVFQLTPASSFGAISFTNPGFDRNLDLPGFGGIRDSLDVNMSTAVCHFRSLSKSCSIVTKTYQGWEGVTNVNTPFGQFAHSGLLKNDEILCLADDLATRLTGVYGATDNFAAAVLAFAANMLTSVLKSE 590
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       


Chain B from PDB  Type:PROTEIN  Length:547
 aligned with Q90063_9VIRU | Q90063 from UniProtKB/TrEMBL  Length:644

    Alignment length:547
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       
         Q90063_9VIRU    44 DNVTAAAQELGQSLDANVITFPTNVATMPEFRSWARGKLDIDQDSIGWYFKYLDPAGATESARAVGEYSKIPDGLVKFSVDAEIREIYNEECPTVSDASIPLDGAQWSLSIISYPMFRTAYFAVANVDNKEISLDVTNDLIVWLNNLASWRDVVDSGQWFTFSDDPTWFVRIRVLHPTYDLPDPTEGLLRTCSDYRLTYKSITCEANMPTLVDQGFWIGGHYALTPIATTQNAVEGSGFEHPFNVTRPGIAAGVTLTWASMPPGGSAPSGDPAWIPDSTTQFQWRHGGFDAPTGVITYTIPRGYTMQYFDTTTNEWNGFANPDDVVTFGQTGGAAGTNATITITAPTVTLTILATTTSAANVINFRNLDAETTAASNRSEVPLPPLTFGQTAPNNPKIEQTLVKDTLGSYLVHSKMRNPVFQLTPASSFGAISFTNPGFDRNLDLPGFGGIRDSLDVNMSTAVCHFRSLSKSCSIVTKTYQGWEGVTNVNTPFGQFAHSGLLKNDEILCLADDLATRLTGVYGATDNFAAAVLAFAANMLTSVLKSE 590
               SCOP domains d1ohfb_ B: Tetraomegavirus capsid protein                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------1ohfB02 B:117-276,B:417-544,B:562-566  [code=2.60.120.20, no name defined]                                                                                      --------------------------------------------------------------------------------------------------------------------------------------------1ohfB02 B:117-276,B:417-544,B:562-566  [code=2.60.120.20, no name defined]                                                      -----------------1ohfB------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh................hhhhhh........hhhhhhhhhhhhhhhhhhh................eeeeeeeeeeeee...............eeeeeeee.....eeeeeeee......hhhhhhhhhhhhhh..hhhhhhhhh..ee......eeeeeeehhhhhh..hhhhh......eeeeeeeeeeeeee.hhhhh..eeeeeee....eeee....eee.....eeee.......eeeee................ee.....eeeee.........eeee......eeeee....eeeeee....eeeeeeee.hhhh.eeeeeee..eeeeeee.......ee.eee..eee....eeeeee....hhhhhhhhh...eeee.....eeeee...........ee....eeeeee....hhhhh................eeeeeeeeee...eeeeeeeeeeeee......hhhhhee....hhhhhhhhhhhhhhh..eee.hhh..hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ohf B  44 DNVTAAAQELGQSLDANVITFPTNVATMPEFRSWARGKLDIDQDSIGWYFKYLDPAGATESARAVGEYSKIPDGLVKFSVDAEIREIYNEECPTVSDASIPLDGAQWSLSIISYPMFRTAYFAVANVDNKEISLDVTNDLIVWLNNLASWRDVVDSGQWFTFSDDPTWFVRIRVLHPTYDLPDPTEGLLRTVSDYRLTYKSITCEANMPTLVDQGFWIGGHYALTPIATTQNAVEGSGFVHPFNVTRPGIAAGVTLTWASMPPGGSAPSGDPAWIPDSTTQFQWRHGGFDAPTGVITYTIPRGYTMQYFDTTTNEWNGFANPDDVVTFGQTGGAAGTNATITITAPTVTLTILATTTSAANVINFRNLDAETTAASNRSEVPLPPLTFGQTAPNNPKIEQTLVKDTLGSYLVHSKMRNPVFQLTPASSFGAISFTNPGFDRNLDLPGFGGIRDSLDVNMSTAVCHFRSLSKSCSIVTKTYQGWEGVTNVNTPFGQFAHSGLLKNDEILCLADDLATRLTGVYGATDNFAAAVLAFAANMLTSVLKSE 590
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       


Chain C from PDB  Type:PROTEIN  Length:590
 aligned with Q4TVT6_9VIRU | Q4TVT6 from UniProtKB/TrEMBL  Length:644

    Alignment length:600
                                    51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641
         Q4TVT6_9VIRU    42 NIDNVTAAAQELGQSLDANVITFPTNVATMPEFRSWARGKLDIDQDSIGWYFKYLDPAGATESARAVGEYSKIPDGLVKFSVDAEIREIYNEECPTVSDASIPLDGAQWSLSIISYPMFRTAYFAVANVDNKEISLDVTNDLIVWLNNLASWRDVVDSGQWFAFSDDPTWFVRIRVLHPTYDLPDPTEGLLRTVSDYRLTYKSITCEANMPTLVDQGFWIGGHYALTPIATTQNAVEGSGFVHPFNVTRPGIAAGVTLTWASMPPGGSAPSGDPAWIPDSTTQFQWRHGGFDAPTGVITYTIPRGYTMQYFDTTTNEWNGFANPDDVVTFGQTGGAAGTNATITITAPTVTLTILATTTSAANVINFRNLDAETTAASNRSEVPLPPLTFGQTAPNNPKIEQTLVKDTLGSYLVHSKMRNPVFQLTPASSFGAISFTNPGFDRNLDLPGFGGIRDSLDVNMSTAVCHFRSLSKSCSIVTKTYQGWEGVTNVNTPFGQFAHSGLLKNDEILCLADDLATRLTGVYGATDNFAAAVSAFAANMLTSVLKSEATTSVIKELGNQATGLANQGLARLSGLLASIPGKIAARVRARRDRRRAARM 641
               SCOP domains d1ohfc_ C: Tetraomegavirus capsid protein                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains ---------------------------------------------------------------------------1ohfC02 C:117-278,C:417-    544,C:562-570  [code=2.60.120.20, no name defined]                                                                                    ------------------------------------------------------------------------------------------------------------------------------------------1ohfC02 C:117-278,C:417-544,C:562-570  [code=2.60.120.20, no name defined]                                                      -----------------1ohfC02  --------------------  ---------    ------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh........hhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh................eeeeeeeeeeeee.......----....eeeeeeee.....eeeeeeee......hhhhhhhhhhhhhh..hhhhhhhhh..ee......eeeeeeehhhhhh.............eeeeeeeeeeeeee........eeeeeee....eeee....eee.....eeeee......eeeee................ee.....eeeee.........eeee......eeeee....eeeeee....eeeeeee.hhhhh.eeeeeee..eeeeeee...eeeeee.eee..eee....eeeeee....hhhhhhhhh...eeeehhhhheeeee...........ee....eeeeee....hhhhh................eeeeeeeeee...eeeeeeeeeeee.......hhhhhee....hhhhhhhhhhhhhhh..eee.hhh..hhhhhhhhhhhhhhh...--hhhhhhh..----....................hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ohf C  42 NIDNVTAAAQELGQSLDANVITFPTNVATMPEFRSWARGKLDIDQDSIGWYFKYLDPAGATESARAVGEYSKIPDGLVKFSVDAEIREIYNEECPTVSD----LDGAQWSLSIISYPMFRTAYFAVANVDNKEISLDVTNDLIVWLNNLASWRDVVDSGQWFTFSDDPTWFVRIRVLHPTYDLPDPTEGLLRTVSDYRLTYKSITCEANMPTLVDQGFWIGGHYALTPIATTQNAVEGSGFVHPFNVTRPGIAAGVTLTWASMPPGGSAPSGDPAWIPDSTTQFQWRHGGFDAPTGVITYTIPRGYTMQYFDTTTNEWNGFANPDDVVTFGQTGGAAGTNATITITAPTVTLTILATTTSAANVINFRNLDAETTAASNRSEVPLPPLTFGQTAPNNPKIEQTLVKDTLGSYLVHSKMRNPVFQLTPASSFGAISFTNPGFDRNLDLPGFGGIRDSLDVNMSTAVCHFRSLSKSCSIVTKTYQGWEGVTNVNTPFGQFAHSGLLKNDEILCLADDLATRLTGVYGATDNFAAAVLAFAANMLTSVLKSE--TSVIKELGN----LANQGLARLPGLLASIPGKIAARVRARRDRRRAARM 641
                                    51        61        71        81        91       101       111       121       131        |-   |   151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581        |- |     601    |  611       621       631       641
                                                                                                                            140  145                                                                                                                                                                                                                                                                                                                                                                                                                                                          590  |     601  606                                   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 593                                                


Chain C from PDB  Type:PROTEIN  Length:590
 aligned with Q90063_9VIRU | Q90063 from UniProtKB/TrEMBL  Length:644

    Alignment length:600
                                    51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641
         Q90063_9VIRU    42 NIDNVTAAAQELGQSLDANVITFPTNVATMPEFRSWARGKLDIDQDSIGWYFKYLDPAGATESARAVGEYSKIPDGLVKFSVDAEIREIYNEECPTVSDASIPLDGAQWSLSIISYPMFRTAYFAVANVDNKEISLDVTNDLIVWLNNLASWRDVVDSGQWFTFSDDPTWFVRIRVLHPTYDLPDPTEGLLRTCSDYRLTYKSITCEANMPTLVDQGFWIGGHYALTPIATTQNAVEGSGFEHPFNVTRPGIAAGVTLTWASMPPGGSAPSGDPAWIPDSTTQFQWRHGGFDAPTGVITYTIPRGYTMQYFDTTTNEWNGFANPDDVVTFGQTGGAAGTNATITITAPTVTLTILATTTSAANVINFRNLDAETTAASNRSEVPLPPLTFGQTAPNNPKIEQTLVKDTLGSYLVHSKMRNPVFQLTPASSFGAISFTNPGFDRNLDLPGFGGIRDSLDVNMSTAVCHFRSLSKSCSIVTKTYQGWEGVTNVNTPFGQFAHSGLLKNDEILCLADDLATRLTGVYGATDNFAAAVLAFAANMLTSVLKSEATTSVIKELGNQATGLANQGLARLPGLLASIPGKIAARVRARRDRRRAARM 641
               SCOP domains d1ohfc_ C: Tetraomegavirus capsid protein                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains ---------------------------------------------------------------------------1ohfC02 C:117-278,C:417-    544,C:562-570  [code=2.60.120.20, no name defined]                                                                                    ------------------------------------------------------------------------------------------------------------------------------------------1ohfC02 C:117-278,C:417-544,C:562-570  [code=2.60.120.20, no name defined]                                                      -----------------1ohfC02  --------------------  ---------    ------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh........hhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh................eeeeeeeeeeeee.......----....eeeeeeee.....eeeeeeee......hhhhhhhhhhhhhh..hhhhhhhhh..ee......eeeeeeehhhhhh.............eeeeeeeeeeeeee........eeeeeee....eeee....eee.....eeeee......eeeee................ee.....eeeee.........eeee......eeeee....eeeeee....eeeeeee.hhhhh.eeeeeee..eeeeeee...eeeeee.eee..eee....eeeeee....hhhhhhhhh...eeeehhhhheeeee...........ee....eeeeee....hhhhh................eeeeeeeeee...eeeeeeeeeeee.......hhhhhee....hhhhhhhhhhhhhhh..eee.hhh..hhhhhhhhhhhhhhh...--hhhhhhh..----....................hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ohf C  42 NIDNVTAAAQELGQSLDANVITFPTNVATMPEFRSWARGKLDIDQDSIGWYFKYLDPAGATESARAVGEYSKIPDGLVKFSVDAEIREIYNEECPTVSD----LDGAQWSLSIISYPMFRTAYFAVANVDNKEISLDVTNDLIVWLNNLASWRDVVDSGQWFTFSDDPTWFVRIRVLHPTYDLPDPTEGLLRTVSDYRLTYKSITCEANMPTLVDQGFWIGGHYALTPIATTQNAVEGSGFVHPFNVTRPGIAAGVTLTWASMPPGGSAPSGDPAWIPDSTTQFQWRHGGFDAPTGVITYTIPRGYTMQYFDTTTNEWNGFANPDDVVTFGQTGGAAGTNATITITAPTVTLTILATTTSAANVINFRNLDAETTAASNRSEVPLPPLTFGQTAPNNPKIEQTLVKDTLGSYLVHSKMRNPVFQLTPASSFGAISFTNPGFDRNLDLPGFGGIRDSLDVNMSTAVCHFRSLSKSCSIVTKTYQGWEGVTNVNTPFGQFAHSGLLKNDEILCLADDLATRLTGVYGATDNFAAAVLAFAANMLTSVLKSE--TSVIKELGN----LANQGLARLPGLLASIPGKIAARVRARRDRRRAARM 641
                                    51        61        71        81        91       101       111       121       131        |-   |   151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581        |- |     601    |  611       621       631       641
                                                                                                                            140  145                                                                                                                                                                                                                                                                                                                                                                                                                                                          590  |     601  606                                   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 593                                                


Chain D from PDB  Type:PROTEIN  Length:587
 aligned with Q4TVT6_9VIRU | Q4TVT6 from UniProtKB/TrEMBL  Length:644

    Alignment length:599
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632         
         Q4TVT6_9VIRU    43 IDNVTAAAQELGQSLDANVITFPTNVATMPEFRSWARGKLDIDQDSIGWYFKYLDPAGATESARAVGEYSKIPDGLVKFSVDAEIREIYNEECPTVSDASIPLDGAQWSLSIISYPMFRTAYFAVANVDNKEISLDVTNDLIVWLNNLASWRDVVDSGQWFAFSDDPTWFVRIRVLHPTYDLPDPTEGLLRTVSDYRLTYKSITCEANMPTLVDQGFWIGGHYALTPIATTQNAVEGSGFVHPFNVTRPGIAAGVTLTWASMPPGGSAPSGDPAWIPDSTTQFQWRHGGFDAPTGVITYTIPRGYTMQYFDTTTNEWNGFANPDDVVTFGQTGGAAGTNATITITAPTVTLTILATTTSAANVINFRNLDAETTAASNRSEVPLPPLTFGQTAPNNPKIEQTLVKDTLGSYLVHSKMRNPVFQLTPASSFGAISFTNPGFDRNLDLPGFGGIRDSLDVNMSTAVCHFRSLSKSCSIVTKTYQGWEGVTNVNTPFGQFAHSGLLKNDEILCLADDLATRLTGVYGATDNFAAAVSAFAANMLTSVLKSEATTSVIKELGNQATGLANQGLARLSGLLASIPGKIAARVRARRDRRRAARM 641
               SCOP domains d1ohfd_ D: Tetraomegavirus capsid protein                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------1ohfD02 D:117-278,D:417-544,D:562-570  [code=2.60.120.20, no name defined]                                                                                        ------------------------------------------------------------------------------------------------------------------------------------------1ohfD02 D:117-278,D:417-544,D:562-570  [code=2.60.120.20, no name defined]                                                      -----------------1ohfD02  ----------------------------------------------------------------------- CATH domains
           Pfam domains (1) Peptidase_A21-1ohfD01 D:43-641                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Pfam domains (1)
           Pfam domains (2) Peptidase_A21-1ohfD02 D:43-641                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Pfam domains (2)
           Pfam domains (3) Peptidase_A21-1ohfD03 D:43-641                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Pfam domains (3)
           Pfam domains (4) Peptidase_A21-1ohfD04 D:43-641                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Pfam domains (4)
         Sec.struct. author .hhhhhhhhhhhhhhh........hhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh................eeeeeeeeeeeee...............eeeeeeee.....eeeeeeee......hhhhhhhhhhhhhh..hhhhhhhhh..ee......eeeeeeehhhhhh.............eeeeeeeeeeeeee........eeeeeee....eeee............eeeee......eeeee................ee.....eeeee.........eeee......eeeee....eeee......eeeeeeee.hhhh.eeeeeee..eeeeeee...eeeeee.eee.........eeeeee....hhhhhhhhh...eeeehhhhheeeee...........ee....eeeeee....hhhhh................eeeeeeeeee...eeeeeeeeeeeee......hhhhhee....hhhhhhhhhhhhhhh..eee.hhh..hhhhhhhhhhhhhhhhh....hhhhhh..------------............hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ohf D  43 IDNVTAAAQELGQSLDANVITFPTNVATMPEFRSWARGKLDIDQDSIGWYFKYLDPAGATESARAVGEYSKIPDGLVKFSVDAEIREIYNEECPTVSDASIPLDGAQWSLSIISYPMFRTAYFAVANVDNKEISLDVTNDLIVWLNNLASWRDVVDSGQWFTFSDDPTWFVRIRVLHPTYDLPDPTEGLLRTVSDYRLTYKSITCEANMPTLVDQGFWIGGHYALTPIATTQNAVEGSGFVHPFNVTRPGIAAGVTLTWASMPPGGSAPSGDPAWIPDSTTQFQWRHGGFDAPTGVITYTIPRGYTMQYFDTTTNEWNGFANPDDVVTFGQTGGAAGTNATITITAPTVTLTILATTTSAANVINFRNLDAETTAASNRSEVPLPPLTFGQTAPNNPKIEQTLVKDTLGSYLVHSKMRNPVFQLTPASSFGAISFTNPGFDRNLDLPGFGGIRDSLDVNMSTAVCHFRSLSKSCSIVTKTYQGWEGVTNVNTPFGQFAHSGLLKNDEILCLADDLATRLTGVYGATDNFAAAVLAFAANMLTSVLKSEATTSVIKELGN------------LPGLLASIPGKIAARVRARRDRRRAARM 641
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592        |-         - |     622       632         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        601          614                           


Chain D from PDB  Type:PROTEIN  Length:587
 aligned with Q90063_9VIRU | Q90063 from UniProtKB/TrEMBL  Length:644

    Alignment length:599
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632         
         Q90063_9VIRU    43 IDNVTAAAQELGQSLDANVITFPTNVATMPEFRSWARGKLDIDQDSIGWYFKYLDPAGATESARAVGEYSKIPDGLVKFSVDAEIREIYNEECPTVSDASIPLDGAQWSLSIISYPMFRTAYFAVANVDNKEISLDVTNDLIVWLNNLASWRDVVDSGQWFTFSDDPTWFVRIRVLHPTYDLPDPTEGLLRTCSDYRLTYKSITCEANMPTLVDQGFWIGGHYALTPIATTQNAVEGSGFEHPFNVTRPGIAAGVTLTWASMPPGGSAPSGDPAWIPDSTTQFQWRHGGFDAPTGVITYTIPRGYTMQYFDTTTNEWNGFANPDDVVTFGQTGGAAGTNATITITAPTVTLTILATTTSAANVINFRNLDAETTAASNRSEVPLPPLTFGQTAPNNPKIEQTLVKDTLGSYLVHSKMRNPVFQLTPASSFGAISFTNPGFDRNLDLPGFGGIRDSLDVNMSTAVCHFRSLSKSCSIVTKTYQGWEGVTNVNTPFGQFAHSGLLKNDEILCLADDLATRLTGVYGATDNFAAAVLAFAANMLTSVLKSEATTSVIKELGNQATGLANQGLARLPGLLASIPGKIAARVRARRDRRRAARM 641
               SCOP domains d1ohfd_ D: Tetraomegavirus capsid protein                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------1ohfD02 D:117-278,D:417-544,D:562-570  [code=2.60.120.20, no name defined]                                                                                        ------------------------------------------------------------------------------------------------------------------------------------------1ohfD02 D:117-278,D:417-544,D:562-570  [code=2.60.120.20, no name defined]                                                      -----------------1ohfD02  ----------------------------------------------------------------------- CATH domains
           Pfam domains (1) Peptidase_A21-1ohfD01 D:43-641                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Pfam domains (1)
           Pfam domains (2) Peptidase_A21-1ohfD02 D:43-641                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Pfam domains (2)
           Pfam domains (3) Peptidase_A21-1ohfD03 D:43-641                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Pfam domains (3)
           Pfam domains (4) Peptidase_A21-1ohfD04 D:43-641                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Pfam domains (4)
         Sec.struct. author .hhhhhhhhhhhhhhh........hhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh................eeeeeeeeeeeee...............eeeeeeee.....eeeeeeee......hhhhhhhhhhhhhh..hhhhhhhhh..ee......eeeeeeehhhhhh.............eeeeeeeeeeeeee........eeeeeee....eeee............eeeee......eeeee................ee.....eeeee.........eeee......eeeee....eeee......eeeeeeee.hhhh.eeeeeee..eeeeeee...eeeeee.eee.........eeeeee....hhhhhhhhh...eeeehhhhheeeee...........ee....eeeeee....hhhhh................eeeeeeeeee...eeeeeeeeeeeee......hhhhhee....hhhhhhhhhhhhhhh..eee.hhh..hhhhhhhhhhhhhhhhh....hhhhhh..------------............hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ohf D  43 IDNVTAAAQELGQSLDANVITFPTNVATMPEFRSWARGKLDIDQDSIGWYFKYLDPAGATESARAVGEYSKIPDGLVKFSVDAEIREIYNEECPTVSDASIPLDGAQWSLSIISYPMFRTAYFAVANVDNKEISLDVTNDLIVWLNNLASWRDVVDSGQWFTFSDDPTWFVRIRVLHPTYDLPDPTEGLLRTVSDYRLTYKSITCEANMPTLVDQGFWIGGHYALTPIATTQNAVEGSGFVHPFNVTRPGIAAGVTLTWASMPPGGSAPSGDPAWIPDSTTQFQWRHGGFDAPTGVITYTIPRGYTMQYFDTTTNEWNGFANPDDVVTFGQTGGAAGTNATITITAPTVTLTILATTTSAANVINFRNLDAETTAASNRSEVPLPPLTFGQTAPNNPKIEQTLVKDTLGSYLVHSKMRNPVFQLTPASSFGAISFTNPGFDRNLDLPGFGGIRDSLDVNMSTAVCHFRSLSKSCSIVTKTYQGWEGVTNVNTPFGQFAHSGLLKNDEILCLADDLATRLTGVYGATDNFAAAVLAFAANMLTSVLKSEATTSVIKELGN------------LPGLLASIPGKIAARVRARRDRRRAARM 641
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592        |-         - |     622       632         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        601          614
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Sandwich (5577)
(-)
Topology: Jelly Rolls (1293)
(-)
Homologous Superfamily: [code=2.60.120.20, no name defined] (133)
(-)
Nudaurelia capensis omega virus. Organism_taxid: 12541 (1)
1a1ohfB02B:117-276,B:417-544,B:562-566
1b1ohfC02C:117-278,C:417-544,C:562-570
1c1ohfD02D:117-278,D:417-544,D:562-570
1d1ohfA02A:117-275,A:417-544,A:562-570

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: Viral_ssRNA_CP (106)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q90063_9VIRU | Q90063)

Chain A,B,C,D   (Q4TVT6_9VIRU | Q4TVT6)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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