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(-) Description

Title :  BIOTIN CARBOXYL CARRIER DOMAIN OF TRANSCARBOXYLASE (1.3S) [10-48] DELETION MUTANT
 
Authors :  M. M. Jank, J. D. Sadowsky, C. Peikert, S. Berger
Date :  24 Oct 02  (Deposition) - 21 Nov 02  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Carrier Protein, Transcarboxylase, Carboxyl Carrier, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. M. Jank, J. D. Sadowsky, C. Peikert, S. Berger
Nmr Studies On The Solution Structure Of A Deletion Mutant Of The Transcarboxylase Biotin Carrier Subunit
Int. J. Biol. Macromol. V. 30 233 2002
PubMed-ID: 12297230  |  Reference-DOI: 10.1016/S0141-8130(02)00033-8
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BIOTIN CARBOXYL CARRIER PROTEIN OF METHYLMALONYL-COA CARBOXYL-TRANSFERASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTAC1.3DELTA10-48, PCY216
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: PROPIONIBACTERIUM FREUDENREICHII SUBSP. SHERMANII
    Organism Taxid: 1752
    Other Details: RESIDUES 10-48 DELETION MUTANT
    Synonym: TRANSCARBOXYLASE, 1.3S SUBUNIT

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1O78)

(-) Sites  (0, 0)

(no "Site" information available for 1O78)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1O78)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1O78)

(-) PROSITE Motifs  (2, 2)

NMR Structure (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BIOTINYL_LIPOYLPS50968 Biotinyl/lipoyl domain profile.BCCP_PROFR46-123  1A:9-84
2BIOTINPS00188 Biotin-requiring enzymes attachment site.BCCP_PROFR79-96  1A:40-57

(-) Exons   (0, 0)

(no "Exon" information available for 1O78)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:84
 aligned with BCCP_PROFR | P02904 from UniProtKB/Swiss-Prot  Length:123

    Alignment length:123
                                    10        20        30        40        50        60        70        80        90       100       110       120   
           BCCP_PROFR     1 MKLKVTVNGTAYDVDVDVDKSHENPMGTILFGGGTGGAPAPRAAGGAGAGKAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 123
               SCOP domains d1o78a_                                        A: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)              SCOP domains
               CATH domains 1o78A00                                        A:1-84  [code=2.40.50.100, no name defined]                                  CATH domains
               Pfam domains ------------------------------------------------------Biotin_lipoyl-1o78A01 A:16-83                                       - Pfam domains
         Sec.struct. author ........---------------------------------------...................ee......ee....eeee.........ee....eeeeee..............eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------------------------------------BIOTINYL_LIPOYL  PDB: A:9-84 UniProt: 46-123                                   PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------BIOTIN            --------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o78 A   1 MKLKVTVN---------------------------------------GAGKAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG  84
                                   | -         -         -         -       |11        21        31        41        51        61        71        81   
                                   8                                       9
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: Hybrid (58)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (BCCP_PROFR | P02904)
molecular function
    GO:0047154    methylmalonyl-CoA carboxytransferase activity    Catalysis of the reaction: pyruvate + D-methylmalonyl-CoA = oxaloacetic acid + propionyl-CoA.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

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  1o78
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  BCCP_PROFR | P02904
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BCCP_PROFR | P02904: 1dcz 1dd2

(-) Related Entries Specified in the PDB File

1dcz BIOTIN CARBOXYL CARRIER DOMAIN OF TRANSCARBOXYLASE (TC 1.3S)
1dd2 BIOTIN CARBOXYL CARRIER DOMAIN OF TRANSCARBOXYLASE (TC 1.3S)