1O5H - JenaLib

Title :   CRYSTAL STRUCTURE OF FORMIMINOTETRAHYDROFOLATE CYCLODEAMINASE (TM1560) FROM THERMOTOGA MARITIMA AT 2.80 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   17 Sep 03 (Deposition) - 30 Sep 03 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym./Biol. Unit : A,B

Keywords :   Tm1560, Formiminotetrahydrofolate Cyclodeaminase, Structural Genomics, Jcsg, Psi, Protein Structure Initiative, Joint Center For Structural Genomics, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Q. Xu, R. Schwarzenbacher, D. Mcmullan, P. Abdubek, E. Ambing, T. Biorac, J. M. Canaves, H. J. Chiu, X. Dai, A. M. Deacon, M. Didonato, M. A. Elsliger, A. Godzik, C. Grittini, S. K. Grzechnik, E. Hampton, M. Hornsby, L. Jaroszewski, H. E. Klock, E. Koesema, A. Kreusch, P. Kuhn, S. A. Lesley, I. Levin, M. D. Miller, A. Morse, K. Moy, J. Ouyang R. Page, K. Quijano, R. Reyes, A. Robb, E. Sims, G. Spraggon, R. C. Stevens, H. Van Den Bedem, J. Velasquez, J. Vincent, F. Von Delft, X. Wang, B. West, A. White, G. Wolf, O. Zagnitko, K. O. Hodgson, J. Wooley, I. A. Wilson
Crystal Structure Of A Formiminotetrahydrofolate Cyclodeaminase (Tm1560) From Thermotoga Maritima At 2. 80 A Resolution Reveals A New Fold
Proteins V. 58 976 2005
PubMed-ID: 15651027 | Reference-DOI: 10.1002/PROT.20364

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 22)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:200
 aligned with Q9X1P6_THEMA | Q9X1P6 from UniProtKB/TrEMBL  Length:202

    Alignment length:200
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201
         Q9X1P6_THEMA     2 EVERLSLKEFCDMVAERKPTPGGGAVGSVVGAMACALAEMVANFTRKKKGYEDVEPEMERIVEAMEEARLKLFDLAKKDMEAFEKVMKAYKSSEGELQNALKEAASVPMDVIRVMKDLAHELEKLAEFGNKNLASDTLNAADLCHAVFQVEKVNVLINLKEISDETFRKNMLEELEEQEAQIEGCYQRVKKMLEGIVWSS 201
               SCOP domains d1o5ha_ A: Hypothetical protein TM1560                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o5h A   2 EVERLSLKEFCDmVAERKPTPGGGAVGSVVGAmACALAEmVANFTRKKKGYEDVEPEmERIVEAmEEARLKLFDLAKKDmEAFEKVmKAYKSSEGELQNALKEAASVPmDVIRVmKDLAHELEKLAEFGNKNLASDTLNAADLCHAVFQVEKVNVLINLKEISDETFRKNmLEELEEQEAQIEGCYQRVKKmLEGIVWSS 201
                                    11  |     21        31  |     41        51       |61    |   71        81      | 91       101       111    |  121       131       141       151       161       171|      181       191 |     201
                                       14-MSE              34-MSE 41-MSE            59-MSE 66-MSE         81-MSE 88-MSE               110-MSE |                                                     172-MSE              193-MSE    
                                                                                                                                            116-MSE

Chain B from PDB  Type:PROTEIN  Length:198
 aligned with Q9X1P6_THEMA | Q9X1P6 from UniProtKB/TrEMBL  Length:202

    Alignment length:198
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191        
         Q9X1P6_THEMA     2 EVERLSLKEFCDMVAERKPTPGGGAVGSVVGAMACALAEMVANFTRKKKGYEDVEPEMERIVEAMEEARLKLFDLAKKDMEAFEKVMKAYKSSEGELQNALKEAASVPMDVIRVMKDLAHELEKLAEFGNKNLASDTLNAADLCHAVFQVEKVNVLINLKEISDETFRKNMLEELEEQEAQIEGCYQRVKKMLEGIVW 199
               SCOP domains d1o5hb_ B: Hypothetical protein TM1560                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) ----FTCD_C-1o5hB01 B:6-180                                                                                                                                                         ------------------- Pfam domains (1)
           Pfam domains (2) ----FTCD_C-1o5hB02 B:6-180                                                                                                                                                         ------------------- Pfam domains (2)
         Sec.struct. author hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1o5h B   2 EVERLSLKEFCDmVAERKPTPGGGAVGSVVGAmACALAEmVANFTRKKKGYEDVEPEmERIVEAmEEARLKLFDLAKKDmEAFEKVmKAYKSSEGELQNALKEAASVPmDVIRVmKDLAHELEKLAEFGNKNLASDTLNAADLCHAVFQVEKVNVLINLKEISDETFRKNmLEELEEQEAQIEGCYQRVKKmLEGIVW 199
                                    11  |     21        31  |     41        51       |61    |   71        81      | 91       101       111    |  121       131       141       151       161       171|      181       191 |      
                                       14-MSE              34-MSE 41-MSE            59-MSE 66-MSE         81-MSE 88-MSE               110-MSE |                                                     172-MSE              193-MSE  
                                                                                                                                            116-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (1, 2)

Gene Ontology (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (Q9X1P6_THEMA | Q9X1P6)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0030412	formimidoyltetrahydrofolate cyclodeaminase activity	Catalysis of the reaction: 5-formimidoyltetrahydrofolate + 2 H(+) = 5,10-methenyltetrahydrofolate + NH(4)(+).
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
	GO:0044237	cellular metabolic process	The chemical reactions and pathways by which individual cells transform chemical substances.

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Access by PDB/NDB ID
	1o5h
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	Q9X1P6_THEMA \| Q9X1P6
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

Access by Enzyme Classificator (EC Number)
	4.3.1.4
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Description