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(-) Description

Title :  SOLUTION STRUCTURE OF HYPOTHETICAL ARABIDOPSIS THALIANA PROTEIN AT3G17210. CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS TARGET 13081
 
Authors :  B. L. Lytle, F. C. Peterson, B. F. Volkman, Center For Eukaryotic Str Genomics (Cesg)
Date :  06 Aug 03  (Deposition) - 19 Aug 03  (Release) - 30 Jan 13  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
NMR Structure *:  A,B  (1x)
Keywords :  Structural Genomics, Unknown Function, Protein Structure Initiative, Cesg, Psi, Center For Eukaryotic Structural Genomics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. L. Lytle, F. C. Peterson, K. L. Kjer, R. O. Frederick, Q. Zhao, S. Thao C. Bingman, K. A. Johnson, G. N. Phillips Jr. , B. F. Volkman
Structure Of The Hypothetical Protein At3G17210 From Arabidopsis Thaliana.
J. Biomol. Nmr V. 28 397 2004
PubMed-ID: 14872131  |  Reference-DOI: 10.1023/B:JNMR.0000015385.54050.19

(-) Compounds

Molecule 1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-15B
    Expression System Strain: ROSETTA (NOVAGEN)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Common: THALE CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702

 Structural Features

(-) Chains, Units

  12
NMR Structure (20x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1Q53)

(-) Sites  (0, 0)

(no "Site" information available for 1Q53)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Q53)

(-) Cis Peptide Bonds  (2, 40)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Gly A:9 -Pro A:10
21, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Gly B:9 -Pro B:10

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Q53)

(-) PROSITE Motifs  (1, 2)

NMR Structure (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1S_R_A_B_BARRELPS51502 Stress-response A/B barrel domain profile.POP3_ARATH8-102
 		  2A:11-105
B:11-105
NMR Structure * (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1S_R_A_B_BARRELPS51502 Stress-response A/B barrel domain profile.POP3_ARATH8-102
 		  2A:11-105
B:11-105

(-) Exons   (0, 0)

(no "Exon" information available for 1Q53)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:112
 aligned with POP3_ARATH | Q9LUV2 from UniProtKB/Swiss-Prot  Length:109

    Alignment length:112
                               1                                                                                                            
                               |     7        17        27        37        47        57        67        77        87        97       107  
           POP3_ARATH     - ---MEEAKGPVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDYKPTSVSL 109
               SCOP domains d1q53a_ A: Hypothetical protein AT3G17210.1                                                                      SCOP domains
               CATH domains 1q53A00 A:1-112  [code=3.30.70.900, no name defined]                                                             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeeeee.....hhhhhhhhhhhhhhhhhhh....eeeeee............eeeeeee.hhhhhhhhhhhhhhhhhhhhhhh...eeeeeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------S_R_A_B_BARREL  PDB: A:11-105 UniProt: 8-102                                                   ------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 1q53 A   1 GSHMEEAKGPVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDYKPTSVSL 112
                                    10        20        30        40        50        60        70        80        90       100       110  


Chain B from PDB  Type:PROTEIN  Length:112
 aligned with POP3_ARATH | Q9LUV2 from UniProtKB/Swiss-Prot  Length:109

    Alignment length:112
                               1                                                                                                            
                               |     7        17        27        37        47        57        67        77        87        97       107  
           POP3_ARATH     - ---MEEAKGPVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDYKPTSVSL 109
               SCOP domains d1q53b_ B: Hypothetical protein AT3G17210.1                                                                      SCOP domains
               CATH domains 1q53B00 B:1-112  [code=3.30.70.900, no name defined]                                                             CATH domains
           Pfam domains (1) ----------Dabb-1q53B01 B:11-107                                                                            ----- Pfam domains (1)
           Pfam domains (2) ----------Dabb-1q53B02 B:11-107                                                                            ----- Pfam domains (2)
         Sec.struct. author ...........eeeeeee.....hhhhhhhhhhhhhhhhh......eeeee..............eeeee....hhhhhhhhhhhhhhhhhhhhh...eeeeeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------S_R_A_B_BARREL  PDB: B:11-105 UniProt: 8-102                                                   ------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 1q53 B   1 GSHMEEAKGPVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDYKPTSVSL 112
                                    10        20        30        40        50        60        70        80        90       100       110
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

NMR Structure
(-)
Clan: Dim_A_B_barrel (36)

(-) Gene Ontology  (6, 6)

NMR Structure(hide GO term definitions)
Chain A,B   (POP3_ARATH | Q9LUV2)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
    GO:0050832    defense response to fungus    Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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    Gly A:9 - Pro A:10   [ RasMol ]  
    Gly B:9 - Pro B:10   [ RasMol ]  
 

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  1q53
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POP3_ARATH | Q9LUV2: 1q4r 2q3p

(-) Related Entries Specified in the PDB File

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