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(-) Description

Title :  STRUCTURE OF TRUNCATED VARIANT OF B.SUBTILIS SPP1 PHAGE G39P HELICASE LOADER/INHIBITOR PROTEIN
 
Authors :  S. Bailey, S. E. Sedelnikova, P. Mesa, S. Ayora, J. P. Waltho, A. E. Ashcr A. J. Baron, J. C. Alonso, J. B. Rafferty
Date :  15 Jan 03  (Deposition) - 06 May 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Helical; Bipartite; Natively Unfolded Domain, Replication (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Bailey, S. E. Sedelnikova, P. Mesa, S. Ayora, J. P. Waltho, A. E. Ashcroft, A. J. Baron, J. C. Alonso, J. B. Rafferty
Structural Analysis Of Bacillus Subtilis Spp1 Phage Helicas Loader Protein G39P
J. Biol. Chem. V. 278 15304 2003
PubMed-ID: 12588876  |  Reference-DOI: 10.1074/JBC.M209300200

(-) Compounds

Molecule 1 - REPLISOME ORGANIZER
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCB366
    Expression System Strain: BL21(DE3)[PLYSS]
    Expression System Taxid: 562
    Expression System Vector Type: PT712
    Fragment: G39P112 TRUNCATED VARIANT
    Gene: 39
    Organism Scientific: BACILLUS PHAGE SPP1
    Organism Taxid: 10724
    Other Details: NATIVELY UNFOLDED N-TERMINAL DOMAIN
    Synonym: G39P;
GENE 39

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1NO1)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NO1)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1NO1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1NO1)

(-) Exons   (0, 0)

(no "Exon" information available for 1NO1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:67
 aligned with Q38151_BPSPP | Q38151 from UniProtKB/TrEMBL  Length:126

    Alignment length:67
                                    10        20        30        40        50        60       
          Q38151_BPSPP    1 MIEKDVVQILKAVSEFYPGRFQPDDLKGTVKAWHRVLAEYELEEIMNNLTDYAKVNKFPPTVSDLLK 67
               SCOP domains d1no1a_ A:                                                          SCOP domains
               CATH domains -1no1A00 A:2-67                                                     CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1no1 A  1 mIEKDVVQILKAVSEFYPGRFQPDDLKGTVKAWHRVLAEYELEEImNNLTDYAKVNKFPPTVSDLLK 67
                            |       10        20        30        40     |  50        60       
                            |                                           46-MSE                 
                            1-MSE                                                              


Chain B from PDB  Type:PROTEIN  Length:67
 aligned with Q38151_BPSPP | Q38151 from UniProtKB/TrEMBL  Length:126

    Alignment length:67
                                    10        20        30        40        50        60       
          Q38151_BPSPP    1 MIEKDVVQILKAVSEFYPGRFQPDDLKGTVKAWHRVLAEYELEEIMNNLTDYAKVNKFPPTVSDLLK 67
               SCOP domains d1no1b_ B:                                                          SCOP domains
               CATH domains -1no1B00 B:2-67                                                     CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1no1 B  1 mIEKDVVQILKAVSEFYPGRFQPDDLKGTVKAWHRVLAEYELEEImNNLTDYAKVNKFPPTVSDLLK 67
                            |       10        20        30        40     |  50        60       
                            1-MSE                                       46-MSE                 


Chain C from PDB  Type:PROTEIN  Length:67
 aligned with Q38151_BPSPP | Q38151 from UniProtKB/TrEMBL  Length:126

    Alignment length:67
                                    10        20        30        40        50        60       
          Q38151_BPSPP    1 MIEKDVVQILKAVSEFYPGRFQPDDLKGTVKAWHRVLAEYELEEIMNNLTDYAKVNKFPPTVSDLLK 67
               SCOP domains d1no1c_ C:                                                          SCOP domains
               CATH domains -1no1C00 C:2-67                                                     CATH domains
           Pfam domains (1) Inhibitor_G39P-1no1C01 C:1-67                                       Pfam domains (1)
           Pfam domains (2) Inhibitor_G39P-1no1C02 C:1-67                                       Pfam domains (2)
           Pfam domains (3) Inhibitor_G39P-1no1C03 C:1-67                                       Pfam domains (3)
         Sec.struct. author .hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1no1 C  1 mIEKDVVQILKAVSEFYPGRFQPDDLKGTVKAWHRVLAEYELEEImNNLTDYAKVNKFPPTVSDLLK 67
                            |       10        20        30        40     |  50        60       
                            1-MSE                                       46-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 3)

Asymmetric Unit
(-)
Clan: no clan defined [family: Inhibitor_G39P] (1)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1NO1)

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