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(-)Asym./Biol. Unit
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(-) Description

Title :  CRYSTAL STRUCTURE OF UNLIGANDED TRAFFIC ATPASE OF THE TYPE IV SECRETION SYSTEM OF HELICOBACTER PYLORI
 
Authors :  S. N. Savvides, H. J. Yeo, M. R. Beck, F. Blaesing, R. Lurz, E. Lanka, R. Bu W. Fischer, R. Haas, G. Waksman
Date :  08 Jan 03  (Deposition) - 06 May 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Virb11 Atpase, Bacterial Type Iv Secretion, Hp0525, Helicobacter Pylori, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. N. Savvides, H. J. Yeo, M. R. Beck, F. Blaesing, R. Lurz, E. Lanka, R. Buhrdorf, W. Fischer, R. Haas, G. Waksman
Virb11 Atpases Are Dynamic Hexameric Assemblies: New Insights Into Bacterial Type Iv Secretion
Embo J. V. 22 1969 2003
PubMed-ID: 12727865  |  Reference-DOI: 10.1093/EMBOJ/CDG223

(-) Compounds

Molecule 1 - VIRB11 HOMOLOG
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: HPO525
    Organism Scientific: HELICOBACTER PYLORI
    Organism Taxid: 85962
    Strain: 26695

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 35)

Asymmetric/Biological Unit (1, 35)
No.NameCountTypeFull Name
1MSE35Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1NLZ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NLZ)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Ser A:119 -Pro A:120
2Ser B:119 -Pro B:120
3Ser C:119 -Pro C:120
4Ser D:119 -Pro D:120
5Ser E:119 -Pro E:120
6Ser F:119 -Pro F:120

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1NLZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1NLZ)

(-) Exons   (0, 0)

(no "Exon" information available for 1NLZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:323
 aligned with Q7BK04_HELPX | Q7BK04 from UniProtKB/TrEMBL  Length:330

    Alignment length:323
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325   
         Q7BK04_HELPX     6 LSAEDKKFLEVERALKEAALNPLRHATEELFGDFLKMENITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLMHFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFKDLIDMIVHINHHKQCDEFYIK 328
               SCOP domains d1nlza_ A: Hexameric traffic ATPase, HP0525                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains -------------------1nlzA01 A:25-135  [code=3.30.450.90, no name defined]                                                          1nlzA02 A:136-321 P-loop containing nucleotide triphosphate hydrolases                                                                                                                    ------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee...eeeeee....eeeee...hhhhhhhhhhhhhhhhhhhh..........eeeee.....eeeee...........eeeee.......hhhhhhhh.......hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhh.....eeeee............eeeee.....hhhhhhhhhhh....eeeeee...hhhhhhhhhhhh....eeeeee..hhhhhhhhhhhhhhh.....................eeeee.....eeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nlz A   6 LSAEDKKFLEVERALKEAALNPLRHATEELFGDFLKmENITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLmHFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSImEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRmRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANmSSSNSAARNIKFESLIEGFKDLIDmIVHINHHKQCDEFYIK 328
                                    15        25        35      | 45        55        65        75      | 85        95       105       115       125       135       145       155       165       175       185      |195       205       215       225       235   |   245       255       265       275       285 |     295       305      |315       325   
                                                               42-MSE                                  82-MSE                                                                                                       192-MSE                                        239-MSE                                         287-MSE                  312-MSE            


Chain B from PDB  Type:PROTEIN  Length:307
 aligned with Q7BK04_HELPX | Q7BK04 from UniProtKB/TrEMBL  Length:330

    Alignment length:307
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       
         Q7BK04_HELPX    22 EAALNPLRHATEELFGDFLKMENITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLMHFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFKDLIDMIVHINHHKQCDEFYIK 328
               SCOP domains d1nlzb_ B: Hexameric traffic ATPase, HP0525                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---1nlzB01 B:25-135  [code=3.30.450.90, no name defined]                                                          1nlzB02 B:136-321 P-loop containing nucleotide triphosphate hydrolases                                                                                                                    ------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh..eeeeeee...eeeeee....eeeee...hhhhhhhhhhhhhhhhhhhh..........eeeee.....eeeee...........eeeee.......hhhhhhhh.......hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhh.........eeeee............eeeee.....hhhhhhhhhhhhh..eeee.....hhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhh.....................eeeee.....eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nlz B  22 EAALNPLRHATEELFGDFLKmENITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLmHFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSImEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRmRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANmSSSNSAARNIKFESLIEGFKDLIDmIVHINHHKQCDEFYIK 328
                                    31        41|       51        61        71        81|       91       101       111       121       131       141       151       161       171       181       191|      201       211       221       231       241       251       261       271       281     | 291       301       311|      321       
                                               42-MSE                                  82-MSE                                                                                                       192-MSE                                        239-MSE                                         287-MSE                  312-MSE            


Chain C from PDB  Type:PROTEIN  Length:279
 aligned with Q7BK04_HELPX | Q7BK04 from UniProtKB/TrEMBL  Length:330

    Alignment length:303
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327   
         Q7BK04_HELPX    28 LRHATEELFGDFLKMENITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLMHFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFKDLIDMIVHINHHKQCDEFYIKHR 330
               SCOP domains d1nlzc_ C: Hexameric traffic ATPase, HP0525                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1nlzC01 C:28-135  [code=3.30.450.90, no name defi                        ned]                               1nlzC02 C:136-322 P-loop containing nucleotide triphosphate hydrolases                                                                                                                     -------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................eeee....eeeee.....eeeee.......------------------------..eeeee.....eeeee...........eeeee.......hhhhhhhhh......hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhh.........eeee.............eeee......hhhhhhhhhh.....eeee.....hhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhh.....................eeeee.....eeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nlz C  28 LRHATEELFGDFLKmENITEICYNGNKVVWVLKNNGEWQPFDVRDRKAF------------------------NPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSImEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRmRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANmSSSNSAARNIKFESLIEGFKDLIDmIVHINHHKQCDEFYIKHR 330
                                    37    |   47        57        67        |-         -         -   |   107       117       127       137       147       157       167       177       187    |  197       207       217       227       237 |     247       257       267       277       287       297       307    |  317       327   
                                         42-MSE                            76                      101                                                                                        192-MSE                                        239-MSE                                         287-MSE                  312-MSE              


Chain D from PDB  Type:PROTEIN  Length:320
 aligned with Q7BK04_HELPX | Q7BK04 from UniProtKB/TrEMBL  Length:330

    Alignment length:320
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329
         Q7BK04_HELPX    10 DKKFLEVERALKEAALNPLRHATEELFGDFLKMENITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLMHFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFKDLIDMIVHINHHKQCDEFYIKH 329
               SCOP domains d1nlzd_ D: Hexameric traffic ATPase, HP0525                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---------------1nlzD01 D:25-135  [code=3.30.450.90, no name defined]                                                          1nlzD02 D:136-322 P-loop containing nucleotide triphosphate hydrolases                                                                                                                     ------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhh..eeeeeee...eeeeee....eeeee...hhhhhhhhhhhhhhhhhhhh..........eeeee.....eeeee...........eeeee.......hhhhhhhh.......hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhh.....eeeee............eeeee.....hhhhhhhhhh.....eeee.....hhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhhh.....................eeeee.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nlz D  10 DKKFLEVERALKEAALNPLRHATEELFGDFLKmENITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLmHFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSImEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRmRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANmSSSNSAARNIKFESLIEGFKDLIDmIVHINHHKQCDEFYIKH 329
                                    19        29        39  |     49        59        69        79  |     89        99       109       119       129       139       149       159       169       179       189  |    199       209       219       229       239       249       259       269       279       289       299       309  |    319       329
                                                           42-MSE                                  82-MSE                                                                                                       192-MSE                                        239-MSE                                         287-MSE                  312-MSE             


Chain E from PDB  Type:PROTEIN  Length:305
 aligned with Q7BK04_HELPX | Q7BK04 from UniProtKB/TrEMBL  Length:330

    Alignment length:305
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323     
         Q7BK04_HELPX    24 ALNPLRHATEELFGDFLKMENITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLMHFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFKDLIDMIVHINHHKQCDEFYIK 328
               SCOP domains d1nlze_ E: Hexameric traffic ATPase, HP0525                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -1nlzE01 E:25-135  [code=3.30.450.90, no name defined]                                                          1nlzE02 E:136-321 P-loop containing nucleotide triphosphate hydrolases                                                                                                                    ------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..eeeeeee...eeeeee....eeeee...hhhhhhhhhhhhhhhhhhhh..........eeeee.....eeeee...........eeeee.......hhhhhhhh.......hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhh.........eeeee............eeeee.....hhhhhhhhhh.....eeee.....hhhhhhhhhhhh....eeeee...hhhhhhhhhhhhhhh.....................eeeeee...eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nlz E  24 ALNPLRHATEELFGDFLKmENITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLmHFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSImEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRmRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANmSSSNSAARNIKFESLIEGFKDLIDmIVHINHHKQCDEFYIK 328
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233     | 243       253       263       273       283   |   293       303       313       323     
                                             42-MSE                                  82-MSE                                                                                                       192-MSE                                        239-MSE                                         287-MSE                  312-MSE            


Chain F from PDB  Type:PROTEIN  Length:305
 aligned with Q7BK04_HELPX | Q7BK04 from UniProtKB/TrEMBL  Length:330

    Alignment length:305
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323     
         Q7BK04_HELPX    24 ALNPLRHATEELFGDFLKMENITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLMHFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFKDLIDMIVHINHHKQCDEFYIK 328
               SCOP domains d1nlzf_ F: Hexameric traffic ATPase, HP0525                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------1nlzF01 F:30-135  [code=3.30.450.90, no name defined]                                                     1nlzF02 F:136-321 P-loop containing nucleotide triphosphate hydrolases                                                                                                                    ------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh..eeeeeee...eeeeee....eeeee...hhhhhhhhhhhhhhhhhhhh..........eeeee.....eeeee...........eeeee.......hhhhhhhh.......hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhh.....eeeee............eeeee.....hhhhhhhhhh.....eeee.....hhhhhhhhhhhh....eeeeee..hhhhhhhhhhhhhhh.....................eeeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nlz F  24 ALNPLRHATEELFGDFLKmENITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLmHFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSImEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRmRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANmSSSNSAARNIKFESLIEGFKDLIDmIVHINHHKQCDEFYIK 328
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233     | 243       253       263       273       283   |   293       303       313       323     
                                             42-MSE                                  82-MSE                                                                                                       192-MSE                                        239-MSE                                         287-MSE                  312-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1NLZ)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q7BK04_HELPX | Q7BK04)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  Cis Peptide Bonds
    Ser A:119 - Pro A:120   [ RasMol ]  
    Ser B:119 - Pro B:120   [ RasMol ]  
    Ser C:119 - Pro C:120   [ RasMol ]  
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  1nlz
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  Q7BK04_HELPX | Q7BK04
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q7BK04_HELPX | Q7BK04: 1g6o 1nly 1opx 2pt7

(-) Related Entries Specified in the PDB File

1g6o SAME PROTEIN IN COMPLEX WITH ADP
1nly SAME PROTEIN IN COMPLEX WITH ATPGAMMAS