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(-) Description

Title :  CRYSTAL STRUCTURE OF BACILLUS SUBTILIS YOJF PROTEIN
 
Authors :  Y. Kim, O. Korolev, A. Joachimiak, Midwest Center For Structural G (Mcsg)
Date :  31 Dec 02  (Deposition) - 01 Jul 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  A  (1x)
Keywords :  Yojf, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, O. Korolev, A. Joachimiak
Crystal Structure Of Bacillus Subtilis Yojf Protein
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEIN YOJF
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: YOJF
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A
Biological Unit 2 (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2IPA1Ligand/IonISOPROPYL ALCOHOL
3MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (3, 10)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2IPA2Ligand/IonISOPROPYL ALCOHOL
3MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2IPA-1Ligand/IonISOPROPYL ALCOHOL
3MSE-1Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:6 , GLY A:61 , GOL A:118BINDING SITE FOR RESIDUE IPA A 117
2AC2SOFTWAREGLY A:61 , ASN A:62 , ARG A:66 , IPA A:117BINDING SITE FOR RESIDUE GOL A 118

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NJH)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:63 -Pro A:64

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1NJH)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:108
 aligned with YOJF_BACSU | O31858 from UniProtKB/Swiss-Prot  Length:116

    Alignment length:118
                              1                                                                                                                   
                              |      8        18        28        38        48        58        68        78        88        98       108        
           YOJF_BACSU     - --MKAIIKEDVQASLERYADRPVYIHLETTTGSYSAHLNEKNMTVVAYIRNAKVTYHQAKIKGNGPYRVGLKTEEGWIYAEGLTEYTVDEENRLLMAGHLPGGKLAISLQISEKPFTV 116
               SCOP domains d1njha_ A: Hypothetical protein           YojF                                                                         SCOP domains
               CATH domains 1njhA00 A:-1-116  [code=2.70.180          .10, no name defined]                                                        CATH domains
               Pfam domains ---DUF1806-1njhA01 A:2-115                                                                                           - Pfam domains
         Sec.struct. author ...ee.hhhhhhhhhhhh....eeeeeeeee.----------.eeeeeeeeeee.eeeeeee....eeeeeee...eeeeeee.eeee.....eeeeeee....eeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 1njh A  -1 NAmKAIIKEDVQASLERYADRPVYIHLETTTG----------mTVVAYIRNAKVTYHQAKIKGNGPYRVGLKTEEGWIYAEGLTEYTVDEENRLLmAGHLPGGKLAISLQISEKPFTV 116
                              |      8        18        28 |       -  |     48        58        68        78        88     |  98       108        
                              |                           30         41-MSE                                               94-MSE                  
                              1-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: no clan defined [family: DUF1806] (1)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1NJH)

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  1njh
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  YOJF_BACSU | O31858
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 Related Entries

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