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(-) Description

Title :  SOLUTION STRUCTURE OF THE HOO-BM BOUND BLMT, TRANSPOSON TN5-ENCODING BLEOMYCIN-BINDING PROTEIN
 
Authors :  M. Sugiyama
Date :  25 Dec 02  (Deposition) - 25 Dec 03  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  B,C
Keywords :  Blmt, Bleomycin Complex, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Sugiyama
Solution Structure Of The Hoo-Bm Bound Blmt, Transposon Tn5-Encoding Bleomycin-Binding Protein
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BLEOMYCIN RESISTANCE PROTEIN
    Chains: B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: KLEBSIELLA PNEUMONIAE
    Organism Taxid: 573

 Structural Features

(-) Chains, Units

  
NMR Structure : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

NMR Structure (2, 4)
No.NameCountTypeFull Name
1BLM2Ligand/IonBLEOMYCIN A2
2CU2Ligand/IonCOPPER (II) ION

(-) Sites  (4, 4)

NMR Structure (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREBLM B:2402BINDING SITE FOR RESIDUE CU B 402
2AC2SOFTWAREBLM B:3402BINDING SITE FOR RESIDUE CU B 1402
3AC3SOFTWARELEU B:56 , SER B:58 , TRP B:59 , CYS B:63 , ARG B:65 , ARG B:90 , GLN B:97 , TRP B:99 , MET B:103 , LEU B:113 , ARG B:115 , CU B:402 , ASN C:8 , PHE C:30 , ASP C:32 , TRP C:35 , ILE C:37 , GLU C:46BINDING SITE FOR RESIDUE BLM B 2402
4AC4SOFTWAREASN B:8 , PHE B:30 , ASP B:32 , TRP B:35 , ILE B:37 , GLU B:46 , CU B:1402 , LEU C:56 , SER C:58 , TRP C:59 , CYS C:63 , ARG C:65 , ARG C:90 , GLN C:97 , GLU C:98 , TRP C:99 , GLY C:100 , MET C:103 , LEU C:113 , ARG C:115BINDING SITE FOR RESIDUE BLM B 3402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NIQ)

(-) Cis Peptide Bonds  (2, 2)

NMR Structure
No.Residues
1Tyr B:88 -Pro B:89
2Tyr C:88 -Pro C:89

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1NIQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1NIQ)

(-) Exons   (0, 0)

(no "Exon" information available for 1NIQ)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain B from PDB  Type:PROTEIN  Length:125
 aligned with BLE_KLEPN | P13081 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:125
                                    11        21        31        41        51        61        71        81        91       101       111       121     
            BLE_KLEPN     2 TDQATPNLPSRDFDSTAAFYERLGFGIVFRDAGWMILQRGDLMLEFFAHPGLDPLASWFSCCLRLDDLAEFYRQCKSVGIQETSSGYPRIHAPELQEWGGTMAALVDPDGTLLRLIQNELLAGIS 126
               SCOP domains d1niqb_ B: Bleomycin resistance protein, BRP                                                                                  SCOP domains
               CATH domains 1niqB00 B:2-126 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee.hhhhhhhhhhhh..eeeee...eeeeee..eeeeeee...........eeee...hhhhhhhhhhhhh.........eeeeee.......eeeee.....eeee.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 1niq B   2 TDQATPNLPSRDFDSTAAFYERLGFGIVFRDAGWMILQRGDLMLEFFAHPGLDPLASWFSCCLRLDDLAEFYRQCKSVGIQETSSGYPRIHAPELQEWGGTMAALVDPDGTLLRLIQNELLAGIS 126
                                    11        21        31        41        51        61        71        81        91       101       111       121     


Chain C from PDB  Type:PROTEIN  Length:125
 aligned with BLE_KLEPN | P13081 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:125
                                    11        21        31        41        51        61        71        81        91       101       111       121     
            BLE_KLEPN     2 TDQATPNLPSRDFDSTAAFYERLGFGIVFRDAGWMILQRGDLMLEFFAHPGLDPLASWFSCCLRLDDLAEFYRQCKSVGIQETSSGYPRIHAPELQEWGGTMAALVDPDGTLLRLIQNELLAGIS 126
               SCOP domains d1niqc_ C: Bleomycin resistance protein, BRP                                                                                  SCOP domains
               CATH domains 1niqC00 C:2-126 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1                                                               CATH domains
           Pfam domains (1) -------Glyoxalase_2-1niqC01 C:9-117                                                                                 --------- Pfam domains (1)
           Pfam domains (2) -------Glyoxalase_2-1niqC02 C:9-117                                                                                 --------- Pfam domains (2)
         Sec.struct. author ...eeeeeee.hhhhhhhhhhhh..eeeee...eeeeee..eeeeeee...........eeeeee..hhhhhhhhhhhh.........eeeeeee.....eeeeee.....eeeeee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 1niq C   2 TDQATPNLPSRDFDSTAAFYERLGFGIVFRDAGWMILQRGDLMLEFFAHPGLDPLASWFSCCLRLDDLAEFYRQCKSVGIQETSSGYPRIHAPELQEWGGTMAALVDPDGTLLRLIQNELLAGIS 126
                                    11        21        31        41        51        61        71        81        91       101       111       121
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

NMR Structure
(-)
Clan: Glyoxalase (58)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain B,C   (BLE_KLEPN | P13081)
molecular function
    GO:0008144    drug binding    Interacting selectively and non-covalently with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
biological process
    GO:0046677    response to antibiotic    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.

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    Tyr B:88 - Pro B:89   [ RasMol ]  
    Tyr C:88 - Pro C:89   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BLE_KLEPN | P13081: 1ecs 1ewj 1mh6

(-) Related Entries Specified in the PDB File

1mh6