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(-) Description

Title :  CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA 1070
 
Authors :  Y. Kim, A. Joachimiak, A. Edwards, T. Skarina, A. Savchenko, Midwest Center For Structural Genomics (Mcsg)
Date :  04 Dec 02  (Deposition) - 01 Jul 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Structural Genomics, Hypothetical Protein, Molecular Propeller, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, A. Joachimiak, A. Edwards, T. Skarina, A. Savchenko
Crystal Structure Analysis Of Thermotoga Maritima Hypothetical Protein Tm1070
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN TM1070
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: TM1070
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 37)

Asymmetric/Biological Unit (5, 37)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2EDO3Ligand/Ion1,2-ETHANEDIOL
3FMT4Ligand/IonFORMIC ACID
4MG4Ligand/IonMAGNESIUM ION
5MSE24Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:107 , MG A:1501 , THR B:107 , THR C:107 , THR D:107BINDING SITE FOR RESIDUE CL A 1401
02AC2SOFTWARETHR A:107 , THR A:108 , MG A:1501 , THR B:107 , THR B:108 , THR C:107 , THR C:108 , THR D:107 , THR D:108BINDING SITE FOR RESIDUE CL D 1402
03AC3SOFTWARETHR A:107 , CL A:1401 , THR B:107 , THR C:107 , THR D:107 , CL D:1402BINDING SITE FOR RESIDUE MG A 1501
04AC4SOFTWARELEU A:105 , LEU B:105 , LEU C:105 , LEU D:105BINDING SITE FOR RESIDUE MG A 1502
05AC5SOFTWARETYR A:103 , MG A:1504 , TYR B:103 , HOH B:1354 , TYR C:103 , HOH C:1367 , TYR D:103BINDING SITE FOR RESIDUE MG A 1503
06AC6SOFTWARETHR A:104 , MG A:1503 , THR B:104 , THR C:104 , THR D:104BINDING SITE FOR RESIDUE MG A 1504
07AC7SOFTWAREHIS C:25 , SER C:27 , SER C:94 , ASP D:11 , ARG D:95 , HOH D:1479 , HOH D:1503BINDING SITE FOR RESIDUE EDO D 1301
08AC8SOFTWAREHIS A:25 , SER A:27 , SER A:94 , ASP B:11 , ARG B:95 , HOH B:1380BINDING SITE FOR RESIDUE EDO B 1302
09AC9SOFTWAREASN A:2 , THR A:33 , HOH A:1587 , MSE B:82 , GLU B:84BINDING SITE FOR RESIDUE EDO A 1303
10BC1SOFTWAREASN A:101 , ARG D:19 , HIS D:102 , TYR D:103 , HOH D:1464 , HOH D:1514BINDING SITE FOR RESIDUE FMT D 1304
11BC2SOFTWAREMSE C:1 , ASN C:32 , GLY C:34 , ASP C:35 , GLU C:36 , VAL C:87 , HOH C:1399BINDING SITE FOR RESIDUE FMT C 1305
12BC3SOFTWAREMSE D:1 , ASN D:86 , VAL D:87 , HOH D:1432 , HOH D:1517BINDING SITE FOR RESIDUE FMT D 1306
13BC4SOFTWAREARG A:5 , GLU A:114 , TYR C:21BINDING SITE FOR RESIDUE FMT A 1307

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NC7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1NC7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1NC7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1NC7)

(-) Exons   (0, 0)

(no "Exon" information available for 1NC7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:116
 aligned with Q9X0F9_THEMA | Q9X0F9 from UniProtKB/TrEMBL  Length:114

    Alignment length:116
                             1                                                                                                              114 
                             |       9        19        29        39        49        59        69        79        89        99       109    | 
         Q9X0F9_THEMA     - -MNGARKWFFPDGYIPNGKRGYLVSHESLCIMNTGDETAKIRITFLFEDSKPVVHEVEISPMKSLHLRLDKLGIPKCKPYSIMAESNVPVVMQLSRLDVGKNHYTLMTTIGYWEE-   -
               SCOP domains d1nc7a_ A: Hypothetical protein TM1070                                                                               SCOP domains
               CATH domains 1nc7A00 A:0-115  [code=2.60.290.11, no name defined]                                                                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeee.....ee..ee.eeeeeeee.....eeeeeeeee.....eeeeeee...eeeeee.hhh.......eeeeeeeeeeeeeeeeeeeee..eeeeeeee.eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 1nc7 A   0 HmNGARKWFFPDGYIPNGKRGYLVSHESLCImNTGDETAKIRITFLFEDSKPVVHEVEISPmKSLHLRLDKLGIPKCKPYSImAESNVPVVmQLSRLDVGKNHYTLmTTIGYWEEG 115
                             |       9        19        29 |      39        49        59 |      69        79  |     89 |      99      |109      
                             |                            31-MSE                        61-MSE               82-MSE   91-MSE        106-MSE     
                             1-MSE                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:116
 aligned with Q9X0F9_THEMA | Q9X0F9 from UniProtKB/TrEMBL  Length:114

    Alignment length:116
                                                                                                                                           114  
                                    10        20        30        40        50        60        70        80        90       100       110   |  
         Q9X0F9_THEMA     1 MNGARKWFFPDGYIPNGKRGYLVSHESLCIMNTGDETAKIRITFLFEDSKPVVHEVEISPMKSLHLRLDKLGIPKCKPYSIMAESNVPVVMQLSRLDVGKNHYTLMTTIGYWEE--   -
               SCOP domains d1nc7b_ B: Hypothetical protein TM1070                                                                               SCOP domains
               CATH domains -1nc7B00 B:2-116  [code=2.60.290.11, no name defined]                                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee.....ee..ee.eeeeeeee.....eeeeeeeee.....eeeeeee...eeeeee.hhh.......eeeeeeeeeeeeeeeeeeeee..eeeeeeee.eee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 1nc7 B   1 mNGARKWFFPDGYIPNGKRGYLVSHESLCImNTGDETAKIRITFLFEDSKPVVHEVEISPmKSLHLRLDKLGIPKCKPYSImAESNVPVVmQLSRLDVGKNHYTLmTTIGYWEEGS 116
                            |       10        20        30|       40        50        60|       70        80 |      90|      100     | 110      
                            1-MSE                        31-MSE                        61-MSE               82-MSE   91-MSE        106-MSE      


Chain C from PDB  Type:PROTEIN  Length:116
 aligned with Q9X0F9_THEMA | Q9X0F9 from UniProtKB/TrEMBL  Length:114

    Alignment length:116
                                                                                                                                           114  
                                    10        20        30        40        50        60        70        80        90       100       110   |  
         Q9X0F9_THEMA     1 MNGARKWFFPDGYIPNGKRGYLVSHESLCIMNTGDETAKIRITFLFEDSKPVVHEVEISPMKSLHLRLDKLGIPKCKPYSIMAESNVPVVMQLSRLDVGKNHYTLMTTIGYWEE--   -
               SCOP domains d1nc7c_ C: Hypothetical protein TM1070                                                                               SCOP domains
               CATH domains -1nc7C00 C:2-116  [code=2.60.290.11, no name defined]                                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee.....ee..ee.eeeeeeee.....eeeeeeeee.....eeeeeee...eeeeee.hhh.......eeeeeeeeeeeeeeeeeeeee..eeeeeeee.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 1nc7 C   1 mNGARKWFFPDGYIPNGKRGYLVSHESLCImNTGDETAKIRITFLFEDSKPVVHEVEISPmKSLHLRLDKLGIPKCKPYSImAESNVPVVmQLSRLDVGKNHYTLmTTIGYWEEGS 116
                            |       10        20        30|       40        50        60|       70        80 |      90|      100     | 110      
                            1-MSE                        31-MSE                        61-MSE               82-MSE   91-MSE        106-MSE      


Chain D from PDB  Type:PROTEIN  Length:117
 aligned with Q9X0F9_THEMA | Q9X0F9 from UniProtKB/TrEMBL  Length:114

    Alignment length:117
                             1                                                                                                              114  
                             |       9        19        29        39        49        59        69        79        89        99       109    |  
         Q9X0F9_THEMA     - -MNGARKWFFPDGYIPNGKRGYLVSHESLCIMNTGDETAKIRITFLFEDSKPVVHEVEISPMKSLHLRLDKLGIPKCKPYSIMAESNVPVVMQLSRLDVGKNHYTLMTTIGYWEE--   -
               SCOP domains d1nc7d_ D: Hypothetical protein TM1070                                                                                SCOP domains
               CATH domains 1nc7D00 D:0-116  [code=2.60.290.11, no name defined]                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeee............eeeeeeee.....eeeeeeeee.....eeeeeee...eeeeee.hhh.......eeeeeeeeeeeeeeeeeeeee..eeeeeeee.eee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 1nc7 D   0 HmNGARKWFFPDGYIPNGKRGYLVSHESLCImNTGDETAKIRITFLFEDSKPVVHEVEISPmKSLHLRLDKLGIPKCKPYSImAESNVPVVmQLSRLDVGKNHYTLmTTIGYWEEGS 116
                             |       9        19        29 |      39        49        59 |      69        79  |     89 |      99      |109       
                             1-MSE                        31-MSE                        61-MSE               82-MSE   91-MSE        106-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1NC7)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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