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(-) Description

Title :  CLUMPING FACTOR A FROM STAPHYLOCOCCUS AUREUS
 
Authors :  C. C. S. Deivanayagam, E. R. Wann, W. Chen, M. Carson, K. R. Rajashankar, M. Hook, S. V. L. Narayana
Date :  08 Nov 02  (Deposition) - 04 Mar 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Dev-Igg, Igg, Immunoglobulin, Igsf, Clumping Factor, Staphylococcus Aureus, Fibrinongen-Binding, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. C. S. Deivanayagam, E. R. Wann, W. Chen, M. Carson, K. R. Rajashankar, M. Hook, S. V. L. Narayana
A Novel Variant Of The Immunoglobulin Fold In Surface Adhesins Of Staphylococcus Aureus: Crystal Structure Of The Fibrinogen-Binding Mscramm, Clumping Factor A
Embo J. V. 21 6660 2002
PubMed-ID: 12485987  |  Reference-DOI: 10.1093/EMBOJ/CDF619
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CLUMPING FACTOR
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Organism Taxid: 1280

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1MG3Ligand/IonMAGNESIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:267 , ALA A:269 , VAL A:323 , HOH A:925 , HOH A:930 , HOH A:1022BINDING SITE FOR RESIDUE MG A 900
2AC2SOFTWAREALA A:441 , LEU A:444 , HOH A:1017 , HOH A:1113 , HOH A:1157 , HOH A:1159BINDING SITE FOR RESIDUE MG A 901
3AC3SOFTWARELYS A:281 , LEU A:283 , ASN A:284 , ASP A:340 , HOH A:915 , HOH A:1101 , HOH A:1151BINDING SITE FOR RESIDUE MG A 902

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1N67)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1N67)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1N67)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1N67)

(-) Exons   (0, 0)

(no "Exon" information available for 1N67)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:332
 aligned with CLFA_STAAE | Q53653 from UniProtKB/Swiss-Prot  Length:933

    Alignment length:332
                                   238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558  
           CLFA_STAAE   229 GTDITNQLTNVTVGIDSGTTVYPHQAGYVKLNYGFSVPNSAVKGDTFKITVPKELNLNGVTSTAKVPPIMAGDQVLANGVIDSDGNVIYTFTDYVNTKDDVKATLTMPAYIDPENVKKTGNVTLATGIGSTTANKTVLVDYEKYGKFYNLSIKGTIDQIDKTNNTYRQTIYVNPSGDNVIAPVLTGNLKPNTDSNALIDQQNTSIKVYKVDNAADLSESYFVNPENFEDVTNSVNITFPNPNQYKVEFNTPDDQITTPYIVVVNGHIDPNSKGDLALRSTLYGYNSNIIWRSMSWDNEVAFNNGSGSGDGIDKPVVPEQPDEPGEIEPIPED 560
               SCOP domains d1n67a1 A:229-369 Clumping factor A                                                                                                          d1n67a2 A:370-560 Clumping factor A                                                                                                                                                             SCOP domains
               CATH domains 1n67A01 A:229-369  [code=2.60.40.1280, no name defined]                                                                                      1n67A02 A:370-560  [code=2.60.40.1290, no name defined]                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------SdrG_C_C-1n67A01 A:370-531                                                                                                                                        ----------------------------- Pfam domains
         Sec.struct. author ...hhhhheeeeeeee...eehhhhh..eeeeeeee.........eeee.....eee...........eee...............eeeee.hhhhhh...eeeeeeeeee........eeeeeeeee..eeeeeeeee.....eee..eeeee...eee....eeeeeeee......eeeeeeeeee.......ee......eeeeeee.hhhhh......hhh.eee.hhhheeeeee..eeeee......ee...eeeeeeeee.......eeeeeeeeee......eeeeeeeee...........eeeee................. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n67 A 229 GTDITNQLTNVTVGIDSGTTVYPHQAGYVKLNYGFSVPNSAVKGDTFKITVPKELNLNGVTSTAKVPPIMAGDQVLANGVIDSDGNVIYTFTDYVNTKDDVKATLTMPAYIDPENVKKTGNVTLATGIGSTTANKTVLVDYEKYGKFYNLSIKGTIDQIDKTNNTYRQTIYVNPSGDNVIAPVLTGNLKPNTDSNALIDQQNTSIKVYKVDNAADLSESYFVNPENFEDVTNSVNITFPNPNQYKVEFNTPDDQITTPYIVVVNGHIDPNSKGDLALRSTLYGYNSNIIWRSMSWDNEVAFNNGSGSGDGIDKPVVPEQPDEPGEIEPIPEK 560
                                   238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: SdrG_C_C] (5)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (CLFA_STAAE | Q53653)
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005618    cell wall    The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  1n67
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CLFA_STAAE | Q53653: 5jq6

(-) Related Entries Specified in the PDB File

1amx COLLAGEN BINDING DOMAIN OF STAPHYLOCOCCUS AUREUS