1N10 - JenaLib

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Title :   CRYSTAL STRUCTURE OF PHL P 1, A MAJOR TIMOTHY GRASS POLLEN ALLERGEN

Authors :   A. A. Fedorov, T. Ball, B. Leistler, R. Valenta, S. C. Almo, S. K. Burley, Sgx Research Center For Structural Genomics (Nysgxrc)

Date :   16 Oct 02 (Deposition) - 28 Jan 03 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.90

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Plant Allergen, Phl P 1, Expansin, Immunoglobulin-Like Fold, Double- Psi Beta Barrel, Structural Genomics, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Allergen (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. A. Fedorov, T. Ball, B. Leistler, R. Valenta, S. C. Almo
X-Ray Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen Allergen
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - POLLEN ALLERGEN PHL P 1
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Common	:	FALL ARMYWORM
	Expression System Taxid	:	7108
	Expression System Vector Type	:	BACULOVIRUS
	Gene	:	PHLPI
	Organism Common	:	TIMOTHY GRASS
	Organism Scientific	:	PHLEUM PRATENSE
	Organism Taxid	:	15957
	Synonym	:	PHL P I

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	NAG	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	NAG	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:1010	BINDING SITE FOR RESIDUE NAG A 3001
2	AC2	SOFTWARE	ASN B:2010	BINDING SITE FOR RESIDUE NAG B 3002

Asymmetric Unit

No.	Residues
1	A:1042	-	A:1070
2	A:1073	-	A:1140
3	A:1078	-	A:1084
4	B:2042	-	B:2070
5	B:2073	-	B:2140
6	B:2078	-	B:2084

Asymmetric Unit

No.	Residues
1	Pro A:1050	-	Pro A:1051
2	Pro B:2050	-	Pro B:2051

(no "SAP(SNP)/Variant" information available for 1N10)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EXPANSIN_EG45	PS50842	Expansin, family-45 endoglucanase-like domain profile.	MPAP1_PHLPR	61-167	2	A:1039-1145 B:2039-2145
2	EXPANSIN_CBD	PS50843	Expansin, Cellulose-binding-like domain profile.	MPAP1_PHLPR	181-262	2	A:1159-1240 B:2159-2240

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EXPANSIN_EG45	PS50842	Expansin, family-45 endoglucanase-like domain profile.	MPAP1_PHLPR	61-167	1	A:1039-1145 -
2	EXPANSIN_CBD	PS50843	Expansin, Cellulose-binding-like domain profile.	MPAP1_PHLPR	181-262	1	A:1159-1240 -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EXPANSIN_EG45	PS50842	Expansin, family-45 endoglucanase-like domain profile.	MPAP1_PHLPR	61-167	1	- B:2039-2145
2	EXPANSIN_CBD	PS50843	Expansin, Cellulose-binding-like domain profile.	MPAP1_PHLPR	181-262	1	- B:2159-2240

(no "Exon" information available for 1N10)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:228
 aligned with MPAP1_PHLPR | P43213 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:238
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254        
         MPAP1_PHLPR     25 PKVPPGPNITATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTTEGGTKTEAEDVIPEGWKADTSYES  262
               SCOP domains d1n10a2 A:1003-1145 Pollen           allergen PHL P 1 N-terminal domain                                                                        d1n10a1 A:1146-1240 PHL P 1 C-terminal domain                                                   SCOP domains
               CATH domains ------------1n10A01 A:1015          -1138 Barwin-like endoglucanases                                                                    1n10A02 A:1139-1240  [code=2.60.40.760, no name defined]                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eeeeeeee.----------.................eeeehhhhhhhhh....eeeeee..........eeeeeeee........eeeeehhhhhh.....hhhhhhh...eeeeeee...........eeee.......eeeeeee.......eeeeeeee......ee........eeee........eeeeeee....eeeeeeee.......eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------EXPANSIN_EG45  PDB: A:1039-1145 UniProt: 61-167                                                            -------------EXPANSIN_CBD  PDB: A:1159-1240 UniProt: 181-262                                    PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1n10 A 1003 PKVPPGPNITATYGDKWLDAKSTWYG----------GGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTTEGGTKTEAEDVIPEGWKADTSYES 1240
                                  1012      1022     |   -      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232        
                                                  1028       1039

Chain B from PDB  Type:PROTEIN  Length:228
 aligned with MPAP1_PHLPR | P43213 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:238
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254        
         MPAP1_PHLPR     25 PKVPPGPNITATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTTEGGTKTEAEDVIPEGWKADTSYES  262
               SCOP domains d1n10b2 B:2003-2145 Pollen           allergen PHL P 1 N-terminal domain                                                                        d1n10b1 B:2146-2240 PHL P 1 C-terminal domain                                                   SCOP domains
               CATH domains ------------1n10B01 B:2015          -2138 Barwin-like endoglucanases                                                                    1n10B02 B:2139-2240  [code=2.60.40.760, no name defined]                                               CATH domains
           Pfam domains (1) -----------------------------------------------------DPBB_1-1n10B01 B:2056-2135                                                      ------------Pollen_allerg_1-1n10B03 B:2148-2229                                               ----------- Pfam domains (1)
           Pfam domains (2) -----------------------------------------------------DPBB_1-1n10B02 B:2056-2135                                                      ------------Pollen_allerg_1-1n10B04 B:2148-2229                                               ----------- Pfam domains (2)
         Sec.struct. author .................eeeeeeee.----------.................eeeehhhhhhhhh....eeeeee..........eeeeeeee........eeeeehhhhhh.....hhhhhhh...eeeeeee...........eeee.......eeeeeee.......eeeeeeee......ee...hhhhheeee........eeeeeee....eeeeeeee.......eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------EXPANSIN_EG45  PDB: B:2039-2145 UniProt: 61-167                                                            -------------EXPANSIN_CBD  PDB: B:2159-2240 UniProt: 181-262                                    PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1n10 B 2003 PKVPPGPNITATYGDKWLDAKSTWYG----------GGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTTEGGTKTEAEDVIPEGWKADTSYES 2240
                                  2012      2022     |   -      2042      2052      2062      2072      2082      2092      2102      2112      2122      2132      2142      2152      2162      2172      2182      2192      2202      2212      2222      2232        
                                                  2028       2039

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Beta Barrel (4804)

Topology: Barwin-like endoglucanases (75)

Homologous Superfamily: Barwin-like endoglucanases (12)

Timothy grass (Phleum pratense) (1)

1a	1n10A01	A:1015-1138
1b	1n10B01	B:2015-2138

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: [code=2.60.40.760, no name defined] (5)

Timothy grass (Phleum pratense) (4)

2a	1n10A02	A:1139-1240
2b	1n10B02	B:2139-2240

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: DPBB (9)

Family: DPBB_1 (1)

Phleum pratense (Common timothy) (1)

1a	DPBB_1-1n10B01	B:2056-2135
1b	DPBB_1-1n10B02	B:2056-2135

Clan: no clan defined [family: Pollen_allerg_1] (5)

Family: Pollen_allerg_1 (5)

Phleum pratense (Common timothy) (5)

2a	Pollen_allerg_1-1n10B03	B:2148-2229
2b	Pollen_allerg_1-1n10B04	B:2148-2229

Asymmetric Unit(hide GO term definitions)

Chain A,B (MPAP1_PHLPR | P43213)

biological process
	GO:0019953	sexual reproduction	A reproduction process that creates a new organism by combining the genetic material of two organisms. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two different individuals (parents) join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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