1MXD - JenaLib

Asymmetric Unit (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLU A:7 , GLU A:8 , GLY A:9 , LYS A:241 , PRO A:278 , PHE A:279 , GLU A:307 , GLY A:308 , GLY A:338 , GLY A:339 , ASP A:358 , ARG A:361 , HOH A:520 , HOH A:592	BINDING SITE FOR RESIDUE ACR A 732
02	AC2	SOFTWARE	SER A:132 , THR A:140 , ALA A:141 , ASN A:142 , LEU A:144 , ASP A:145 , TRP A:171 , HOH A:616 , HOH A:626 , HOH A:661	BINDING SITE FOR RESIDUE ACR A 733
03	AC3	SOFTWARE	ASN A:328 , HIS A:390 , GLU A:391 , TYR A:392 , THR A:393 , GLY A:394 , TRP A:399 , GLY A:435 , HOH A:488 , HOH A:665 , HOH A:677 , HOH A:712	BINDING SITE FOR RESIDUE ACR A 734
04	AC4	SOFTWARE	TRP A:18 , TYR A:62 , HIS A:111 , PHE A:159 , ARG A:196 , ASP A:198 , TYR A:199 , LYS A:201 , GLU A:222 , TRP A:224 , HIS A:288 , ASP A:289 , HOH A:479 , HOH A:723 , HOH A:724 , ZN A:730	BINDING SITE FOR RESIDUE ACR A 735
05	AC5	SOFTWARE	ASP A:291 , LYS A:296 , ASP A:316 , TRP A:320 , HOH A:546 , HOH A:586	BINDING SITE FOR RESIDUE GLC A 736
06	AC6	SOFTWARE	HIS A:147 , HIS A:152 , CYS A:166 , HOH A:466	BINDING SITE FOR RESIDUE ZN A 725
07	AC7	SOFTWARE	GLU A:87 , ASP A:252 , ASP A:256 , ILE A:292 , ILE A:293	BINDING SITE FOR RESIDUE ZN A 726
08	AC8	SOFTWARE	GLU A:36 , GLU A:318 , LYS A:323 , ACT A:737	BINDING SITE FOR RESIDUE ZN A 727
09	AC9	SOFTWARE	ASP A:347 , ASP A:349 , GLU A:350 , ARG A:377 , HOH A:465	BINDING SITE FOR RESIDUE ZN A 728
10	BC1	SOFTWARE	GLU A:80 , GLU A:88 , GLU A:253 , HOH A:489	BINDING SITE FOR RESIDUE ZN A 729
11	BC2	SOFTWARE	GLU A:222 , HOH A:723 , ACR A:735	BINDING SITE FOR RESIDUE ZN A 730
12	BC3	SOFTWARE	ASN A:110 , ASP A:155 , GLY A:157 , ASP A:164 , GLY A:202 , HOH A:448	BINDING SITE FOR RESIDUE CA A 731
13	BC4	SOFTWARE	LYS A:33 , GLU A:36 , GLU A:318 , LYS A:323 , HOH A:698 , ZN A:727	BINDING SITE FOR RESIDUE ACT A 737

SS Bonds (2, 2)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:435
 aligned with O08452_9EURY | O08452 from UniProtKB/TrEMBL  Length:460

    Alignment length:435
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455     
         O08452_9EURY    26 AKYLELEEGGVIMQAFYWDVPGGGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTANYLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKGYGAWVVRDWLNWWGGWAVGEYWDTNVDALLSWAYESGAKVFDFPLYYKMDEAFDNNNIPALVYALQNGQTVVSRDPFKAVTFVANHDTDIIWNKYPAYAFILTYEGQPVIFYRDFEEWLNKDKLINLIWIHDHLAGGSTTIVYYDNDELIFVRNGDSRRPGLITYINLSPNWVGRWVYVPKFAGACIHEYTGNLGGWVDKRVDSSGWVYLEAPPHDPANGYYGYSVWSYCGVG 460
               SCOP domains d1mxda2 A:1-361 Bacterial alpha-amylase                                                                                                                                                                                                                                                                                                                                  d1mxda1 A:362-435 Bacterial alpha-Amylase                                  SCOP domains
               CATH domains 1mxdA01 A:1-337 Glycosidases                                                                                                                                                                                                                                                                                                                     1mxdA02 A:338-435 Golgi alpha-mannosidase II                                                       CATH domains
               Pfam domains --------------------------Alpha-amylase-1mxdA02 A:27-325                                                                                                                                                                                                                                                                             --------------------------------------DUF1939-1mxdA01 A:364-430                                          ----- Pfam domains
         Sec.struct. author ....hhhhh..eee..........hhhhhhhhhhhhhhhhh..eee.....ee.hhhhh....eee..................hhhhhhhhhhhhhhh..eeeeee........eeeee....eeeeee...........hhhhh......................hhhhhhhhh....hhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhh..eee.....hhhhhhhhhhhhh.eeehhhhhhhhhhhhh..hhhhhhhhhhh...........eeee..........hhhhhhhhhh....eeeeehhhhhh..hhhhhhhhhhhhhhh....eeeeee...eeeeee........eeeeee.....eeeeee.hhhh.eeeee.........eeee....eeeeee..eehhhhee.eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mxd A   1 AKYLELEEGGVIMQAFYWDVPGGGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTANYLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKGYGAWVVRDWLNWWGGWAVGEYWDTNVDALLSWAYESGAKVFDFPLYYKMDEAFDNNNIPALVYALQNGQTVVSRDPFKAVTFVANHDTDIIWNKYPAYAFILTYEGQPVIFYRDFEEWLNKDKLINLIWIHDHLAGGSTTIVYYDNDELIFVRNGDSRRPGLITYINLSPNWVGRWVYVPKFAGACIHEYTGNLGGWVDKRVDSSGWVYLEAPPHDPANGYYGYSVWSYCGVG 435
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430

Chain A from PDB  Type:PROTEIN  Length:435
 aligned with Q7LYT7_PYRWO | Q7LYT7 from UniProtKB/TrEMBL  Length:460

    Alignment length:435
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455     
         Q7LYT7_PYRWO    26 AKYLELEEGGVIMQAFYWDVPGGGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTANYLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKGYGAWVVRDWLNWWGGWAVGEYWDTNVDALLSWAYESGAKVFDFPLYYKMDEAFDNNNIPALVYALQNGQTVVSRDPFKAVTFVANHDTDIIWNKYPAYAFILTYEGQPVIFYRDFEEWLNKDKLINLIWIHDHLAGGSTTIVYYDNDELIFVRNGDSRRPGLITYINLSPNWVGRWVYVPKFAGACIHEYTGNLGGWVDKRVDSSGWVYLEAPPHDPANGYYGYSVWSYCGVG 460
               SCOP domains d1mxda2 A:1-361 Bacterial alpha-amylase                                                                                                                                                                                                                                                                                                                                  d1mxda1 A:362-435 Bacterial alpha-Amylase                                  SCOP domains
               CATH domains 1mxdA01 A:1-337 Glycosidases                                                                                                                                                                                                                                                                                                                     1mxdA02 A:338-435 Golgi alpha-mannosidase II                                                       CATH domains
               Pfam domains --------------------------Alpha-amylase-1mxdA02 A:27-325                                                                                                                                                                                                                                                                             --------------------------------------DUF1939-1mxdA01 A:364-430                                          ----- Pfam domains
         Sec.struct. author ....hhhhh..eee..........hhhhhhhhhhhhhhhhh..eee.....ee.hhhhh....eee..................hhhhhhhhhhhhhhh..eeeeee........eeeee....eeeeee...........hhhhh......................hhhhhhhhh....hhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhh..eee.....hhhhhhhhhhhhh.eeehhhhhhhhhhhhh..hhhhhhhhhhh...........eeee..........hhhhhhhhhh....eeeeehhhhhh..hhhhhhhhhhhhhhh....eeeeee...eeeeee........eeeeee.....eeeeee.hhhh.eeeee.........eeee....eeeeee..eehhhhee.eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mxd A   1 AKYLELEEGGVIMQAFYWDVPGGGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTANYLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKGYGAWVVRDWLNWWGGWAVGEYWDTNVDALLSWAYESGAKVFDFPLYYKMDEAFDNNNIPALVYALQNGQTVVSRDPFKAVTFVANHDTDIIWNKYPAYAFILTYEGQPVIFYRDFEEWLNKDKLINLIWIHDHLAGGSTTIVYYDNDELIFVRNGDSRRPGLITYINLSPNWVGRWVYVPKFAGACIHEYTGNLGGWVDKRVDSSGWVYLEAPPHDPANGYYGYSVWSYCGVG 435
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (2, 2)

CATH Domains (2, 2)

Pfam Domains (2, 2)

Gene Ontology (10, 19)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (Q7LYT7_PYRWO | Q7LYT7)

molecular function
	GO:0004556	alpha-amylase activity	Catalysis of the endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more alpha-(1->4)-linked D-glucose units.
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0043169	cation binding	Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	Catalysis of the hydrolysis of any O-glycosyl bond.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

Chain A (O08452_9EURY | O08452)

molecular function
	GO:0004556	alpha-amylase activity	Catalysis of the endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more alpha-(1->4)-linked D-glucose units.
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0043169	cation binding	Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	Catalysis of the hydrolysis of any O-glycosyl bond.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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Asymmetric/Biological Unit
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	Cis Peptide Bonds
		His A:147 - Pro A:148	[ RasMol ]

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 13)

Sites (13, 13)

SS Bonds (2, 2)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 2)

CATH Domains (2, 2)

Pfam Domains (2, 2)

Gene Ontology (10, 19)

Visualization

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File