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(-) Description

Title :  CRYSTAL STRUCTURE OF A NATURAL CIRCULARLY-PERMUTATED JELLYROLL PROTEIN: 1,3-1,4-BETA-D-GLUCANASE FROM FIBROBACTER SUCCINOGENES
 
Authors :  L. -C. Tsai, L. -F. Shyur, S. -H. Lee, S. -S. Lin, H. S. Yuan
Date :  25 Sep 02  (Deposition) - 15 Jul 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Circular-Permutated Jellyroll Protein, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. C. Tsai, L. F. Shyur, S. H. Lee, S. S. Lin, H. S. Yuan
Crystal Structure Of A Natural Circularly Permuted Jellyroll Protein: 1, 3-1, 4-Beta-D-Glucanase From Fibrobacter Succinogenes.
J. Mol. Biol. V. 330 607 2003
PubMed-ID: 12842475  |  Reference-DOI: 10.1016/S0022-2836(03)00630-2
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRUNCATED 1,3-1,4-BETA-D-GLUCANASE
    Chains: A
    EC Number: 3.2.1.73
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET26B(+)
    Expression System Strain: B834 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 1-243
    Organism Scientific: FIBROBACTER SUCCINOGENES
    Organism Taxid: 833
    Synonym: ENDO-BETA-1,3-1,4 GLUCANASE, MIXED LINKAGE BETA- GLUCANASE, LICHENASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2MSE5Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:164 , ASN A:189 , GLY A:222 , HOH A:537 , HOH A:566 , HOH A:567BINDING SITE FOR RESIDUE CA A 400

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1MVE)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser A:91 -Pro A:92
2Leu A:157 -Pro A:158

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1MVE)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GH16_1PS01034 Glycosyl hydrolases family 16 active sites.GUB_FIBSS79-89  1A:56-66

(-) Exons   (0, 0)

(no "Exon" information available for 1MVE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:243
 aligned with GUB_FIBSS | P17989 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:243
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263   
            GUB_FIBSS    24 NVSAKDFSGAELYTLEEVQYGKFEARMKMAAASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGKNPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKTEGGQVSNLTGTQGLRFNLWSSESAAWVGQFDESKLPLFQFINWVKVYKYTPGQGEGGSDFTLDWTDNFDTFDGSRWGKGDWTFDGNRVDLTDKNIYSRDGMLILALTRKGQESFNGQVPRD 266
               SCOP domains d1mvea_ A: Bacillus 1-3,1-4-beta-glucanase                                                                                                                                                                                                          SCOP domains
               CATH domains -1mveA00 A:2-243  [code=2.60.120.200, no name defined]                                                                                                                                                                                              CATH domains
               Pfam domains -Glyco_hydro_16-1mveA01 A:2-167                                                                                                                                        ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee......eeeeeeee......eeeeeeee.............eeeeeee.....eeeeeeeeee..eee...eeee.........eeeeeee...eeeeee..eeeeeee.hhhhhh....eeeeeeee..hhhhhh..hhhhh.eeeeeeeeeeeee..........eeeeeee.........eee.........eee....eeee..eeeeeeee............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------GH16_1     --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mve A   1 mVSAKDFSGAELYTLEEVQYGKFEARmKmAAASGTVSSmFLYQNGSEIADGRPWVEVDIEVLGKNPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKTEGGQVSNLTGTQGLRFNLWSSESAAWVGQFDESKLPLFQFINWVKVYKYTPGQGEGGSDFTLDWTDNFDTFDGSRWGKGDWTFDGNRVDLTDKNIYSRDGmLILALTRKGQESFNGQVPRD 243
                            |       10        20      | 30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220  |    230       240   
                            |                        27-MSE      39-MSE                                                                                                                                                                                 223-MSE                
                            1-MSE                      29-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: Concanavalin (293)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (GUB_FIBSS | P17989)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
    GO:0042972    licheninase activity    Catalysis of the hydrolysis of (1->4)-beta-D-glucosidic linkages in beta-D-glucans containing (1->3) and (1->4) bonds.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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  GUB_FIBSS | P17989
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GUB_FIBSS | P17989: 1zm1 2r49 3axd 3axe 3h0o 3hr9

(-) Related Entries Specified in the PDB File

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