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Title :   1.22 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF ESTEROLYTIC ANTIBODY MS6-12

Authors :   S. N. Ruzheinikov, T. A. Muranova, S. E. Sedelnikova, L. J. Partridge, G. M. Blackburn, I. A. Murray, H. Kakinuma, N. Takashi, K. Shimazaki, J Y. Nishi, D. W. Rice

Date :   28 Aug 02 (Deposition) - 23 Sep 03 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.22

Chains :   Asym./Biol. Unit : H,L

Keywords :   Catalytic Antibody, Ester Hydrolysis, Esterolytic, Fab, Immunoglobulin, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. N. Ruzheinikov, T. A. Muranova, S. E. Sedelnikova, L. J. Partridge, G. M. Blackburn, I. A. Murray, H. Kakinuma, N. Takashi, K. Shimazaki, J. Sun, Y. Nishi, D. W. Rice
High-Resolution Crystal Structure Of The Fab-Fragments Of A Family Of Mouse Catalytic Antibodies With Esterase Activity
J. Mol. Biol. V. 332 423 2003
PubMed-ID: 12948492 | Reference-DOI: 10.1016/S0022-2836(03)00902-1
(for further references see the PDB file header)

Molecule 1 - IMMUNOGLOBULIN MS6-12
	Cell Line	:	HYBRIDOMA
	Chains	:	L
	Engineered	:	YES
	Expression System	:	MUS MUSCULUS
	Expression System Common	:	HOUSE MOUSE
	Expression System Taxid	:	10090
	Fragment	:	FAB FRAGMENT, LIGHT CHAIN
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Other Details	:	FUSING OF MOUSE SPLENOCYTES WITH MYELOMA CELL

Molecule 2 - IMMUNOGLOBULIN MS6-12
	Cell Line	:	HYBRIDOMA
	Chains	:	H
	Engineered	:	YES
	Expression System	:	MUS MUSCULUS
	Expression System Common	:	HOUSE MOUSE
	Expression System Taxid	:	10090
	Fragment	:	FAB FRAGMENT, HEAVY CHAIN
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Other Details	:	FUSING OF MOUSE SPLENOCYTES WITH MYELOMA CELL

		1	2
Asymmetric/Biological Unit	:	H	L

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 7)

No.	Name	Count	Type	Full Name
1	GOL	6	Ligand/Ion	GLYCEROL
2	PCA	1	Mod. Amino Acid	PYROGLUTAMIC ACID

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY L:29 , ASN L:30 , THR L:31 , ARG L:50 , HOH L:1670	BINDING SITE FOR RESIDUE GOL L 1401
2	AC2	SOFTWARE	LYS H:95 , GLY H:97 , TRP H:98 , HOH H:1589 , HOH H:1636 , HOH H:1856 , TYR L:32 , HIS L:91 , HOH L:1558	BINDING SITE FOR RESIDUE GOL H 1402
3	AC3	SOFTWARE	ALA L:55 , GLY L:57 , VAL L:58 , ASP L:60 , THR L:197 , HOH L:1496 , HOH L:1844 , HOH L:1846	BINDING SITE FOR RESIDUE GOL L 1403
4	AC4	SOFTWARE	ARG L:39 , GLN L:45 , VAL L:58 , PRO L:59 , GLU L:81 , ASP L:82	BINDING SITE FOR RESIDUE GOL L 1404
5	AC5	SOFTWARE	HIS H:172 , THR L:164 , ASP L:167 , SER L:168 , HOH L:1413 , HOH L:1450	BINDING SITE FOR RESIDUE GOL L 1405
6	AC6	SOFTWARE	SER H:202 , SER H:204 , LYS H:222 , HOH H:1426 , HOH H:1750 , ARG L:74 , HOH L:1643	BINDING SITE FOR RESIDUE GOL H 1406

Asymmetric/Biological Unit

No.	Residues
1	H:22	-	H:92
2	H:142	-	H:208
3	L:23	-	L:88
4	L:134	-	L:194
5	L:214	-	H:128

Asymmetric/Biological Unit

No.	Residues
1	Tyr L:94	-	Pro L:95
2	Tyr L:140	-	Pro L:141
3	Phe H:148	-	Pro H:149
4	Glu H:150	-	Pro H:151
5	Trp H:199	-	Pro H:200

(no "SAP(SNP)/Variant" information available for 1MJU)

(no "PROSITE Motif" information available for 1MJU)

(no "Exon" information available for 1MJU)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain H from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                    
               SCOP domains d1mjuh1 H:1-113 Immunoglobulin heavy chain variable domain, VH                                                      d1mjuh2 H:114-230 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                  SCOP domains
               CATH domains -1mjuH01 H:2-113 Immunoglobulins                                                                                    1mjuH02 H:114-227 Immunoglobulins                                                            --- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...eeee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee......eee.hhhh..eeeeee....eeeeee...hhhhheeeeeeeee..eeee...eeeee........eeeee.....eeeeeeeeee.....eeee.hhh....eee...eee..eeeeeeeeee..........eeeeeehhhheeeeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mju H   1 xVQLQQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGP 230
                            |       10        20        30        40        50  |     59        69        79   |||  86        96  ||   107       117       127||     145       157||     171       183       193  || ||205||     216      |228  
                            |                                                 52A                            82A||               99|                        128|              154|||    169|      180|          196| || 206|            223|    
                            1-PCA                                                                             82B|               101                         137               157||     171       183           198 ||  208             226    
                                                                                                               82C                                                              158|                               200|                         
                                                                                                                                                                                 162                                202

Chain L from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains d1mjul1 L:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                      d1mjul2 L:108-214 Immunoglobulin light chain kappa constant domain, CL-kappa                                SCOP domains
               CATH domains 1mjuL01 L:1-108 Immunoglobulins                                                                                  1mjuL02 L:109-211 Immunoglobulins                                                                      --- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee....eeee.....eeeeeee............eeeeee......eeeee...ee.......eeeee...eeeeee...hhhhheeeeeee......ee...eeeee.......eeeee..hhhhhh..eeeeeeeeeee.....eeeeee..eee...eeeee.........eeeeeeeeeehhhhhh..eeeeeee.......eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mju L   1 DIVMTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVGVYYCLQHLEYPFTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC 214
                                    10        20       27C||      35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205         
                                                     27A||||                                                                                                                                                                                           
                                                      27B|||                                                                                                                                                                                           
                                                       27C||                                                                                                                                                                                           
                                                        27D|                                                                                                                                                                                           
                                                         27E

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: Immunoglobulins (2282)

House mouse (Mus musculus) (616)

1a	1mjuL02	L:109-211
1b	1mjuL01	L:1-108
1c	1mjuH02	H:114-227
1d	1mjuH01	H:2-113

(no "Pfam Domain" information available for 1MJU)

Asymmetric/Biological Unit(hide GO term definitions)

(no "Gene Ontology" information available for 1MJU)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Glu H:150 - Pro H:151	[ RasMol ]
		Phe H:148 - Pro H:149	[ RasMol ]
		Trp H:199 - Pro H:200	[ RasMol ]
		Tyr L:140 - Pro L:141	[ RasMol ]
		Tyr L:94 - Pro L:95	[ RasMol ]

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	1mju
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1mh5	THE STRUCTURE OF THE COMPLEX OF THE FAB FRAGMENT OF THEESTEROLYTIC ANTIBODY MS6-164 AND A TRANSITION-STATE ANALOG
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1mj7	CRYSTAL STRUCTURE OF THE COMPLEX OF THE FAB FRAGMENT OF ESTEROLYTIC ANTIBODY MS5-393D9 AND A TRANSITION-STATE ANALOG
1mj8	HIGH RESOLUTION CRYSTAL STRUCTURE OF THE COMPLEX OF THE FAB FRAGMENT OF THE ESTEROLYTIC ANTIBODY MS6-126 AND A TRANSITION-STATE ANALOG
1mjj	HIGH RESOLUTION CRYSTAL STRUCTURE OF THE COMPLEX OF THE FAB FRAGMENT OF ESTEROLYTIC ANTIBODY MS6-12 AND A TRANSITION- STATE ANALOG

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 7)

Sites (6, 6)

SS Bonds (5, 5)

Cis Peptide Bonds (5, 5)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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SCOP Domains (4, 4)

CATH Domains (1, 4)

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