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(-) Description

Title :  NITROGENASE MOFE PROTEIN FROM AZOTOBACTER VINELANDII, OXIDIZED STATE
 
Authors :  J. W. Peters, M. H. B. Stowell, S. M. Soltis, M. W. Day, J. Kim, D. C. Rees
Date :  20 Dec 96  (Deposition) - 01 Apr 97  (Release) - 05 May 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.03
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Nitrogen Fixation, Nitrogen Metabolism, Oxidoreductase, Molybdoenzymes, Biological Nitrogen Fixation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. W. Peters, M. H. Stowell, S. M. Soltis, M. G. Finnegan, M. K. Johnson, D. C. Rees
Redox-Dependent Structural Changes In The Nitrogenase P-Cluster.
Biochemistry V. 36 1181 1997
PubMed-ID: 9063865  |  Reference-DOI: 10.1021/BI9626665
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NITROGENASE MOLYBDENUM IRON PROTEIN
    Chains: A, C
    EC Number: 1.18.6.1
    Organism Scientific: AZOTOBACTER VINELANDII
    Organism Taxid: 354
    Strain: WILD-TYPE
 
Molecule 2 - NITROGENASE MOLYBDENUM IRON PROTEIN
    Chains: B, D
    EC Number: 1.18.6.1
    Organism Scientific: AZOTOBACTER VINELANDII
    Organism Taxid: 354
    Strain: WILD-TYPE

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric/Biological Unit (4, 8)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2CFM2Ligand/IonFE-MO-S CLUSTER
3CLF2Ligand/IonFE(8)-S(7) CLUSTER
4HCA2Ligand/Ion3-HYDROXY-3-CARBOXY-ADIPIC ACID

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE B:107 , ARG B:108 , GLU B:109 , ASP D:353 , ASP D:357BINDING SITE FOR RESIDUE CA B 524
2AC2SOFTWAREASP B:353 , ASP B:357 , HOH B:702 , ARG D:108 , GLU D:109 , HOH D:547BINDING SITE FOR RESIDUE CA B 525
3AC3SOFTWAREALA A:65 , ARG A:96 , GLN A:191 , GLY A:424 , ILE A:425 , HIS A:442 , CFM A:496 , HOH A:505 , HOH A:518 , HOH A:520 , HOH A:526 , HOH A:533 , HOH A:539 , HOH A:540 , HOH A:544 , HOH A:615 , HOH A:618BINDING SITE FOR RESIDUE HCA A 494
4AC4SOFTWARECYS A:62 , TYR A:64 , PRO A:85 , GLY A:87 , CYS A:88 , TYR A:91 , CYS A:154 , GLY A:185 , CYS B:70 , SER B:92 , CYS B:95 , TYR B:98 , CYS B:153 , SER B:188BINDING SITE FOR RESIDUE CLF A 498
5AC5SOFTWAREVAL A:70 , ARG A:96 , HIS A:195 , TYR A:229 , CYS A:275 , SER A:278 , GLY A:356 , GLY A:357 , LEU A:358 , ARG A:359 , PHE A:381 , HIS A:442 , HCA A:494BINDING SITE FOR RESIDUE CFM A 496
6AC6SOFTWAREALA C:65 , ARG C:96 , GLN C:191 , GLY C:424 , ILE C:425 , HIS C:442 , CFM C:496 , HOH C:500 , HOH C:514 , HOH C:520 , HOH C:536 , HOH C:541 , HOH C:553 , HOH C:561 , HOH C:572 , HOH C:595 , HOH D:551BINDING SITE FOR RESIDUE HCA C 494
7AC7SOFTWARECYS C:62 , TYR C:64 , PRO C:85 , GLY C:87 , CYS C:88 , TYR C:91 , CYS C:154 , GLY C:185 , CYS D:70 , SER D:92 , CYS D:95 , TYR D:98 , CYS D:153 , SER D:188BINDING SITE FOR RESIDUE CLF C 498
8AC8SOFTWAREVAL C:70 , ARG C:96 , HIS C:195 , TYR C:229 , CYS C:275 , SER C:278 , GLY C:356 , GLY C:357 , ARG C:359 , PHE C:381 , HIS C:442 , HCA C:494BINDING SITE FOR RESIDUE CFM C 496

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2MIN)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Gly A:448 -Pro A:449
2Tyr B:12 -Pro B:13
3Phe B:471 -Pro B:472
4Gly C:448 -Pro C:449
5Tyr D:12 -Pro D:13
6Phe D:471 -Pro D:472

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2MIN)

(-) PROSITE Motifs  (2, 8)

Asymmetric/Biological Unit (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NITROGENASE_1_1PS00699 Nitrogenases component 1 alpha and beta subunits signature 1.NIFD_AZOVI81-88
 		  2A:81-88
C:81-88
NIFK_AZOVI88-95
 		  2B:88-95
D:88-95
2NITROGENASE_1_2PS00090 Nitrogenases component 1 alpha and beta subunits signature 2.NIFK_AZOVI151-165
 		  2B:151-165
D:151-165
NIFD_AZOVI152-166
 		  2A:152-166
C:152-166

(-) Exons   (0, 0)

(no "Exon" information available for 2MIN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:467
 aligned with NIFD_AZOVI | P07328 from UniProtKB/Swiss-Prot  Length:492

    Alignment length:476
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474      
           NIFD_AZOVI     5 SREEVESLIQEVLEVYPEKARKDRNKHLAVNDPAVTQSKKCIISNKKSQPGLMTIRGCAYAGSKGVVWGPIKDMIHISHGPVGCGQYSRAGRRNYYIGTTGVNAFVTMNFTSDFQEKDIVFGGDKKLAKLIDEVETLFPLNKGISVQSECPIGLIGDDIESVSKVKGAELSKTIVPVRCEGFRGVSQSLGHHIANDAVRDWVLGKRDEDTTFASTPYDVAIIGDYNIGGDAWSSRILLEEMGLRCVAQWSGDGSISEIELTPKVKLNLVHCYRSMNYISRHMEEKYGIPWMEYNFFGPTKTIESLRAIAAKFDESIQKKCEEVIAKYKPEWEAVVAKYRPRLEGKRVMLYIGGLRPRHVIGAYEDLGMEVVGTGYEFAHNDDYDRTMKEMGDSTLLYDDVTGYEFEEFVKRIKPDLIGSGIKEKFIFQKMGIPFREMHSWDYSGPYHGFDGFAIFARDMDMTLNNPCWKKLQAPWE 480
               SCOP domains d2mina_ A: Nitrogenase iron-mol         ybdenum protein, alpha chain                                                                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 2minA01 A:5-62,A:345-479                                  2minA02 A:63-205 Nitrogenase molybdenum iron protein domain                                                                                    2minA03 A:206-320 Nitrogenase molybdenum iron protein domain                                                       ------------------------2minA01 A:5-62,A:345-479 Nitrogenase molybdenum iron protein domain                                                                    - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh..hhhhhhhhhheee.---------..................hhhhh...........eeeee..hhhhhh............................hhhhhh..hhhhhhhhhhhhhh......eeeee.hhhhh....hhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhh................eeeee....hhh..hhhhhhhhh...eeeee......hhhhhhhhh..eeee..hhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee.....hhhh.hhhhhhh..eeeeeee....hhhhhhhhhh.....eeee...hhhhhhhhhhh...eeee.hhhhhhhhh....eee...hhh.....hhhhhhhhhhhhhhhh..hhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------------------NITROGEN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------NITROGENASE_1_2-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2min A   5 SREEVESLIQEVLEVYPEKARKDRNKHLAVN---------CIISNKKSQPGLMTIRGCAYAGSKGVVWGPIKDMIHISHGPVGCGQYSRAGRRNYYIGTTGVNAFVTMNFTSDFQEKDIVFGGDKKLAKLIDEVETLFPLNKGISVQSECPIGLIGDDIESVSKVKGAELSKTIVPVRCEGFRGVSQSLGHHIANDAVRDWVLGKRDEDTTFASTPYDVAIIGDYNIGGDAWSSRILLEEMGLRCVAQWSGDGSISEIELTPKVKLNLVHCYRSMNYISRHMEEKYGIPWMEYNFFGPTKTIESLRAIAAKFDESIQKKCEEVIAKYKPEWEAVVAKYRPRLEGKRVMLYIGGLRPRHVIGAYEDLGMEVVGTGYEFAHNDDYDRTMKEMGDSTLLYDDVTGYEFEEFVKRIKPDLIGSGIKEKFIFQKMGIPFREMHSWDYSGPYHGFDGFAIFARDMDMTLNNPCWKKLQAPWE 480
                                    14        24        34|        -|       54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474      
                                                         35        45                                                                                                                                                                                                                                                                                                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:522
 aligned with NIFK_AZOVI | P07329 from UniProtKB/Swiss-Prot  Length:523

    Alignment length:522
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521  
           NIFK_AZOVI     2 SQQVDKIKASYPLFLDQDYKDMLAKKRDGFEEKYPQDKIDEVFQWTTTKEYQELNFQREALTVNPAKACQPLGAVLCALGFEKTMPYVHGSQGCVAYFRSYFNRHFREPVSCVSDSMTEDAAVFGGQQNMKDGLQNCKATYKPDMIAVSTTCMAEVIGDDLNAFINNSKKEGFIPDEFPVPFAHTPSFVGSHVTGWDNMFEGIARYFTLKSMDDKVVGSNKKINIVPGFETYLGNFRVIKRMLSEMGVGYSLLSDPEEVLDTPADGQFRMYAGGTTQEEMKDAPNALNTVLLQPWHLEKTKKFVEGTWKHEVPKLNIPMGLDWTDEFLMKVSEISGQPIPASLTKERGRLVDMMTDSHTWLHGKRFALWGDPDFVMGLVKFLLELGCEPVHILCHNGNKRWKKAVDAILAASPYGKNATVYIGKDLWHLRSLVFTDKPDFMIGNSYGKFIQRDTLHKGKEFEVPLIRIGFPIFDRHHLHRSTTLGYEGAMQILTTLVNSILERLDEETRGMQATDYNHDLVR 523
               SCOP domains d2minb_ B: Nitrogenase iron-molybdenum protein, beta chain                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains --------------------------------------------------------------------2minB01 B:70-215 Nitrogenase molybdenum iron protein domain                                                                                       2minB02 B:216-320 Nitrogenase molybdenum iron protein domain                                             2minB04 B:321-364,B:485-523                 2minB03 B:365-470 Nitrogenase molybdenum iron protein domain                                              --------------2minB04 B:321-364,B:485-523             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........hhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhh.hhhhhhhh.............hhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhh............hhhhhh..hhhhhhhhhhhhhhh...eeeeee.hhhhh....hhhhhhhhhh.....................hhhhhhhhhhhhhhhhhhhhhhh........eeee......hhhhhhhhhhhhh....eeee.......................hhhhhhhhh..eeee..hhh.hhhhhhhhh.............hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhh......eeee....hhhhhhhhhhhh..hhh...eeee...hhhhhhhhhh....eeee.hhhhhhhhhhhhh.hhh..eeee..........hhh....hhhhhhhhhhhhhhhhhhhhhhh.......hhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------------------NITROGEN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (1) -----------------------------------------------------------------------------------------------------------------------------------------------------NITROGENASE_1_2---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2min B   2 SQQVDKIKASYPLFLDQDYKDMLAKKRDGFEEKYPQDKIDEVFQWTTTKEYQELNFQREALTVNPAKACQPLGAVLCALGFEKTMPYVHGSQGCVAYFRSYFNRHFREPVSCVSDSMTEDAAVFGGQQNMKDGLQNCKATYKPDMIAVSTTCMAEVIGDDLNAFINNSKKEGFIPDEFPVPFAHTPSFVGSHVTGWDNMFEGIARYFTLKSMDDKVVGSNKKINIVPGFETYLGNFRVIKRMLSEMGVGYSLLSDPEEVLDTPADGQFRMYAGGTTQEEMKDAPNALNTVLLQPWHLEKTKKFVEGTWKHEVPKLNIPMGLDWTDEFLMKVSEISGQPIPASLTKERGRLVDMMTDSHTWLHGKRFALWGDPDFVMGLVKFLLELGCEPVHILCHNGNKRWKKAVDAILAASPYGKNATVYIGKDLWHLRSLVFTDKPDFMIGNSYGKFIQRDTLHKGKEFEVPLIRIGFPIFDRHHLHRSTTLGYEGAMQILTTLVNSILERLDEETRGMQATDYNHDLVR 523
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521  


Chain C from PDB  Type:PROTEIN  Length:468
 aligned with NIFD_AZOVI | P07328 from UniProtKB/Swiss-Prot  Length:492

    Alignment length:477
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       
           NIFD_AZOVI     5 SREEVESLIQEVLEVYPEKARKDRNKHLAVNDPAVTQSKKCIISNKKSQPGLMTIRGCAYAGSKGVVWGPIKDMIHISHGPVGCGQYSRAGRRNYYIGTTGVNAFVTMNFTSDFQEKDIVFGGDKKLAKLIDEVETLFPLNKGISVQSECPIGLIGDDIESVSKVKGAELSKTIVPVRCEGFRGVSQSLGHHIANDAVRDWVLGKRDEDTTFASTPYDVAIIGDYNIGGDAWSSRILLEEMGLRCVAQWSGDGSISEIELTPKVKLNLVHCYRSMNYISRHMEEKYGIPWMEYNFFGPTKTIESLRAIAAKFDESIQKKCEEVIAKYKPEWEAVVAKYRPRLEGKRVMLYIGGLRPRHVIGAYEDLGMEVVGTGYEFAHNDDYDRTMKEMGDSTLLYDDVTGYEFEEFVKRIKPDLIGSGIKEKFIFQKMGIPFREMHSWDYSGPYHGFDGFAIFARDMDMTLNNPCWKKLQAPWEA 481
               SCOP domains d2minc_ C: Nitrogenase iron-mol         ybdenum protein, alpha chain                                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains 2minC01 C:5-62,C:345-479                                  2minC02 C:63-205 Nitrogenase molybdenum iron protein domain                                                                                    2minC03 C:206-320 Nitrogenase molybdenum iron protein domain                                                       ------------------------2minC01 C:5-62,C:345-479 Nitrogenase molybdenum iron protein domain                                                                    -- CATH domains
           Pfam domains (1) ---------------------------------------------------------Oxidored_nitro-2minC01 C:62-468                                                                                                                                                                                                                                                                                                                                                                                        ------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------Oxidored_nitro-2minC02 C:62-468                                                                                                                                                                                                                                                                                                                                                                                        ------------- Pfam domains (2)
         Sec.struct. author .hhhhhhhhhhhhhh..hhhhhhhhhheee.---------..................hhhhh...........eeeee..hhhhhhh...........................hhhhhh..hhhhhhhhhhhhhh......eeeee.hhhhh....hhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhh.hhhh...........eeeee....hhh..hhhhhhhhh...eeeeee.....hhhhhhhhh..eeee..hhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee.....hhhh.hhhhhhh..eeeeeee....hhhhhhhhhh.....eeee...hhhhhhhhhhh...eeee.hhhhhhhhh...eeee...hhh.....hhhhhhhhhhhhhhhh..hhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------------------NITROGEN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------NITROGENASE_1_2--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2min C   5 SREEVESLIQEVLEVYPEKARKDRNKHLAVN---------CIISNKKSQPGLMTIRGCAYAGSKGVVWGPIKDMIHISHGPVGCGQYSRAGRRNYYIGTTGVNAFVTMNFTSDFQEKDIVFGGDKKLAKLIDEVETLFPLNKGISVQSECPIGLIGDDIESVSKVKGAELSKTIVPVRCEGFRGVSQSLGHHIANDAVRDWVLGKRDEDTTFASTPYDVAIIGDYNIGGDAWSSRILLEEMGLRCVAQWSGDGSISEIELTPKVKLNLVHCYRSMNYISRHMEEKYGIPWMEYNFFGPTKTIESLRAIAAKFDESIQKKCEEVIAKYKPEWEAVVAKYRPRLEGKRVMLYIGGLRPRHVIGAYEDLGMEVVGTGYEFAHNDDYDRTMKEMGDSTLLYDDVTGYEFEEFVKRIKPDLIGSGIKEKFIFQKMGIPFREMHSWDYSGPYHGFDGFAIFARDMDMTLNNPCWKKLQAPWEA 481
                                    14        24        34|        -|       54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       
                                                         35        45                                                                                                                                                                                                                                                                                                                                                                                                                                                    


Chain D from PDB  Type:PROTEIN  Length:522
 aligned with NIFK_AZOVI | P07329 from UniProtKB/Swiss-Prot  Length:523

    Alignment length:522
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521  
           NIFK_AZOVI     2 SQQVDKIKASYPLFLDQDYKDMLAKKRDGFEEKYPQDKIDEVFQWTTTKEYQELNFQREALTVNPAKACQPLGAVLCALGFEKTMPYVHGSQGCVAYFRSYFNRHFREPVSCVSDSMTEDAAVFGGQQNMKDGLQNCKATYKPDMIAVSTTCMAEVIGDDLNAFINNSKKEGFIPDEFPVPFAHTPSFVGSHVTGWDNMFEGIARYFTLKSMDDKVVGSNKKINIVPGFETYLGNFRVIKRMLSEMGVGYSLLSDPEEVLDTPADGQFRMYAGGTTQEEMKDAPNALNTVLLQPWHLEKTKKFVEGTWKHEVPKLNIPMGLDWTDEFLMKVSEISGQPIPASLTKERGRLVDMMTDSHTWLHGKRFALWGDPDFVMGLVKFLLELGCEPVHILCHNGNKRWKKAVDAILAASPYGKNATVYIGKDLWHLRSLVFTDKPDFMIGNSYGKFIQRDTLHKGKEFEVPLIRIGFPIFDRHHLHRSTTLGYEGAMQILTTLVNSILERLDEETRGMQATDYNHDLVR 523
               SCOP domains d2mind_ D: Nitrogenase iron-molybdenum protein, beta chain                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains --------------------------------------------------------------------2minD01 D:70-215 Nitrogenase molybdenum iron protein domain                                                                                       2minD02 D:216-320 Nitrogenase molybdenum iron protein domain                                             2minD04 D:321-364,D:485-523                 2minD03 D:365-470 Nitrogenase molybdenum iron protein domain                                              --------------2minD04 D:321-364,D:485-523             CATH domains
           Pfam domains (1) DUF3364-2minD01 D:2-56                                 -------------Oxidored_nitro-2minD03 D:70-502                                                                                                                                                                                                                                                                                                                                                                                                                  --------------------- Pfam domains (1)
           Pfam domains (2) DUF3364-2minD02 D:2-56                                 -------------Oxidored_nitro-2minD04 D:70-502                                                                                                                                                                                                                                                                                                                                                                                                                  --------------------- Pfam domains (2)
         Sec.struct. author .........hhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhh.hhhhhhhh.............hhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhh.....eee....hhhhhh..hhhhhhhhhhhhhhh...eeeeee.hhhhhh...hhhhhhhhhh.....................hhhhhhhhhhhhhhhhh...hhh........eeee......hhhhhhhhhhhhh....eeee.......................hhhhhhhhh..eeee..hhh.hhhhhhhhh.............hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhh..hhh...eeee...hhhhhhhhhh....eeee.hhhhhhhhhhhhh.hhh..eeee..........hhh....hhhhhhhhhhhhhhhhhhhhhhh.......hhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------------------NITROGEN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (1) -----------------------------------------------------------------------------------------------------------------------------------------------------NITROGENASE_1_2---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2min D   2 SQQVDKIKASYPLFLDQDYKDMLAKKRDGFEEKYPQDKIDEVFQWTTTKEYQELNFQREALTVNPAKACQPLGAVLCALGFEKTMPYVHGSQGCVAYFRSYFNRHFREPVSCVSDSMTEDAAVFGGQQNMKDGLQNCKATYKPDMIAVSTTCMAEVIGDDLNAFINNSKKEGFIPDEFPVPFAHTPSFVGSHVTGWDNMFEGIARYFTLKSMDDKVVGSNKKINIVPGFETYLGNFRVIKRMLSEMGVGYSLLSDPEEVLDTPADGQFRMYAGGTTQEEMKDAPNALNTVLLQPWHLEKTKKFVEGTWKHEVPKLNIPMGLDWTDEFLMKVSEISGQPIPASLTKERGRLVDMMTDSHTWLHGKRFALWGDPDFVMGLVKFLLELGCEPVHILCHNGNKRWKKAVDAILAASPYGKNATVYIGKDLWHLRSLVFTDKPDFMIGNSYGKFIQRDTLHKGKEFEVPLIRIGFPIFDRHHLHRSTTLGYEGAMQILTTLVNSILERLDEETRGMQATDYNHDLVR 523
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 14)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 3-Layer(aba) Sandwich (12045)
(-)
Topology: Rossmann fold (7312)
(-)
Homologous Superfamily: Nitrogenase molybdenum iron protein domain (45)
(-)
Azotobacter vinelandii. Organism_taxid: 354. Strain: wild-type. (2)
1a2minA02A:63-205
1b2minC02C:63-205
1c2minB03B:365-470
1d2minD03D:365-470
1e2minB02B:216-320
1f2minD02D:216-320
1g2minA01A:5-62,A:345-479
1h2minC01C:5-62,C:345-479
1i2minB01B:70-215
1j2minD01D:70-215
1k2minA03A:206-320
1l2minC03C:206-320
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (2, 6)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: DUF3364] (10)
(-)
Clan: no clan defined [family: Oxidored_nitro] (12)

(-) Gene Ontology  (10, 20)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,C   (NIFD_AZOVI | P07328)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0018697    carbonyl sulfide nitrogenase activity    Catalysis of the reaction: carbonyl sulfide + 2 H+ + 2 e- = hydrogen sulfide + carbon monoxide.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016163    nitrogenase activity    Catalysis of the reaction: 8 reduced ferredoxin + 8 H+ + nitrogen + 16 ATP = 8 oxidized ferredoxin + 2 NH3 + 16 ADP + 16 phosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0009399    nitrogen fixation    The process in which nitrogen is taken from its relatively inert molecular form (N2) in the atmosphere and converted into nitrogen compounds useful for other chemical processes, such as ammonia, nitrate and nitrogen dioxide.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0016612    molybdenum-iron nitrogenase complex    An enzyme complex containing a molybdenum-iron cluster found in many species. It is composed of two proteins, dinitrogenase and nitrogenase reductase; dinitrogenase, the molybdenum-iron protein, is tetrameric with an alpha2-beta2 structure, and nitrogenase reductase is a homodimer.

Chain B,D   (NIFK_AZOVI | P07329)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0018697    carbonyl sulfide nitrogenase activity    Catalysis of the reaction: carbonyl sulfide + 2 H+ + 2 e- = hydrogen sulfide + carbon monoxide.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016163    nitrogenase activity    Catalysis of the reaction: 8 reduced ferredoxin + 8 H+ + nitrogen + 16 ATP = 8 oxidized ferredoxin + 2 NH3 + 16 ADP + 16 phosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0009399    nitrogen fixation    The process in which nitrogen is taken from its relatively inert molecular form (N2) in the atmosphere and converted into nitrogen compounds useful for other chemical processes, such as ammonia, nitrate and nitrogen dioxide.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0016612    molybdenum-iron nitrogenase complex    An enzyme complex containing a molybdenum-iron cluster found in many species. It is composed of two proteins, dinitrogenase and nitrogenase reductase; dinitrogenase, the molybdenum-iron protein, is tetrameric with an alpha2-beta2 structure, and nitrogenase reductase is a homodimer.

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  NIFK_AZOVI | P07329
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NIFD_AZOVI | P07328: 1fp4 1g20 1g21 1l5h 1m1n 1m1y 1m34 1n2c 2afh 2afi 3k1a 3min 3u7q 4nd8 4tku 4tkv 4wna 4wza 4wzb 4xpi 5bvg 5bvh 5cx1
        NIFK_AZOVI | P07329: 1fp4 1g20 1g21 1l5h 1m1n 1m1y 1m34 1n2c 2afh 2afi 3k1a 3min 3u7q 4nd8 4tku 4tkv 4wna 4wza 4wzb 4xpi 5bvg 5bvh 5cx1

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2MIN)