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(-) Description

Title :  HYPOTHETICAL PROTEIN TM841 FROM THERMOTOGA MARITIMA REVEALS FATTY ACID BINDING FUNCTION
 
Authors :  U. Schulze-Gahmen, J. Pelaschier, H. Yokota, R. Kim, S. -H. Kim, Berkeley Structural Genomics Center (Bsgc)
Date :  15 Aug 02  (Deposition) - 18 Sep 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Two Domain Structure With Mixed Alpha/Beta Structures In Both Domains, Structural Genomics, Bsgc Structure Funded By Nih, Protein Structure Initiative, Psi, Berkeley Structural Genomics Center, Lipid Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. Schulze-Gahmen, J. Pelaschier, H. Yokota, R. Kim, S. -H. Kim
Crystal Structure Of A Hypothetical Protein, Tm841 Of Thermotoga Maritima, Reveals Its Function As Fatty Acid Binding Protein
Proteins V. 50 526 2003
PubMed-ID: 12577257  |  Reference-DOI: 10.1002/PROT.10305
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN TM841
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSKB3?
    Expression System Strain: ROSETTA/PLYSS/RARE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
2PLM1Ligand/IonPALMITIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:53 , THR A:88 , SER A:89 , GLN A:90 , LEU A:120 , SER A:121 , SER A:147 , ALA A:149 , PHE A:187 , ARG A:200 , VAL A:297 , PHE A:304 , GLY A:305 , HOH A:349 , HOH A:355BINDING SITE FOR RESIDUE PLM A 314

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1MGP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1MGP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1MGP)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DEGVPS51482 DegV domain profile.Y1468_THEMA3-283  1A:28-308

(-) Exons   (0, 0)

(no "Exon" information available for 1MGP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:276
 aligned with Y1468_THEMA | Q9X1H9 from UniProtKB/Swiss-Prot  Length:288

    Alignment length:285
                             1                                                                                                                                                                                                                                                                                           
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279     
          Y1468_THEMA     - -MKVKILVDSTADVPFSWMEKYDIDSIPLYVVWEDGRSEPDEREPEEIMNFYKRIREAGSVPKTSQPSVEDFKKRYLKYKEEDYDVVLVLTLSSKLSGTYNSAVLASKEVDIPVYVVDTLLASGAIPLPARVAREMLENGATIEEVLKKLDERMKNKDFKAIFYVSNFDYLVKGGRVSKFQGFVGNLLKIRVCLHIENGELIPYRKVRGDKKAIEALIEKLREDTPEGSKLRVIGVHADNEAGVVELLNTLRKSYEVVDEIISPMGKVITTHVGPGTVGFGIEVL 284
               SCOP domains d1mgpa_ A: Hypothetical protein TM841                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1mgpA01 A:25-179  [code=3.40.50.10170, no name defined]                                                                                                    1mgpA02 A:180-309  [co         de=3.30.1180.10, no name defined]                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------DegV-1mgpA01 A:99-309                                                                                                                                                                                               Pfam domains
         Sec.struct. author ...eeeeee.hhh...hhhhhh.eeee..eee.....eee...hhhhhhhhhhhhhhh....eee..hhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhh..---------...eeeeeeee..eeeeeeeeehhhhhhhhhhhhhhh......eeeeeeee..hhhhhhhhhhhhh...eeeeeeeee.hhhhhhhhh...eeeeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---DEGV  PDB: A:28-308 UniProt: 3-283                                                                                                                                                                                                                                                       - PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mgp A  25 HmKVKILVDSTADVPFSWmEKYDIDSIPLYVVWEDGRSEPDEREPEEImNFYKRIREAGSVPKTSQPSVEDFKKRYLKYKEEDYDVVLVLTLSSKLSGTYNSAVLASKEVDIPVYVVDTLLASGAIPLPARVAREmLENGATIEEVLKKLDERmKNKDFKAIFYVSNFDYLVKGGRV---------LLKIRVCLHIENGELIPYRKVRGDKKAIEALIEKLREDTPEGSKLRVIGVHADNEAGVVELLNTLRKSYEVVDEIISPmGKVITTHVGPGTVGFGIEVL 309
                             |      34        44        54        64        74        84        94       104       114       124       134       144       154     | 164       174   |   184       194      |  -      |214       224       234       244       254       264       274       284    |  294       304     
                             |               43-MSE                        73-MSE                                                                                160-MSE           178-MSE                201       211                                                                           289-MSE                
                            26-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: EDD (22)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Y1468_THEMA | Q9X1H9)
molecular function
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.

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 Related Entries

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UniProtKB/Swiss-Prot
        Y1468_THEMA | Q9X1H9: 1vpv

(-) Related Entries Specified in the PDB File

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