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(-) Description

Title :  CRYSTAL STRUCTURE OF ORANGE CAROTENOID PROTEIN
 
Authors :  C. A. Kerfeld, M. R. Sawaya, B. Vishnu, D. Krogmann, T. O. Yeates
Date :  12 Jan 17  (Deposition) - 25 Jan 17  (Release) - 25 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Carotenoid Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. A. Kerfeld, M. R. Sawaya, B. Vishnu, D. Cascio, K. K. Ho, C. C. Trevithick-Sutton, D. Krogmann, T. O. Yeates
The Crystal Structure Of A Cyanobacterial Water-Soluble Carotenoid Binding Protein
Structure V. 11 55 2003
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ORANGE CAROTENOID-BINDING PROTEIN
    Chains: A, B
    Organism Scientific: ARTHROSPIRA MAXIMA
    Organism Taxid: 129910
    Synonym: OCP

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2EQ32Ligand/Ion(3'R)-3'-HYDROXY-BETA,BETA-CAROTEN-4-ONE
3SUC1Ligand/IonSUCROSE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:54 , ALA A:55 , PRO A:56 , GLY A:57 , ASN A:60 , ASN A:104 , GLU A:176 , ASN A:249 , PRO A:278 , TRP A:279binding site for residue SUC A 401
2AC2SOFTWARETHR A:277 , PRO A:278 , HOH A:561binding site for residue CL A 402
3AC3SOFTWARELEU A:37 , ILE A:40 , TYR A:44 , ILE A:53 , LEU A:107 , TRP A:110 , TYR A:111 , GLY A:114 , ILE A:151 , THR A:152 , ARG A:155 , TYR A:203 , LEU A:207 , CYS A:247 , LEU A:252 , VAL A:275 , THR A:277 , MET A:286 , TRP A:290 , HOH A:607binding site for residue EQ3 A 403
4AC4SOFTWARETHR B:277 , HOH B:538 , HOH B:577binding site for residue CL B 401
5AC5SOFTWARELEU B:37 , ILE B:40 , TYR B:44 , ILE B:53 , LEU B:107 , TRP B:110 , TYR B:111 , GLY B:114 , ILE B:151 , THR B:152 , ARG B:155 , TYR B:203 , LEU B:207 , CYS B:247 , LEU B:252 , THR B:277 , PHE B:280 , TRP B:290 , ILE B:305 , HOH B:540binding site for residue EQ3 B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UI2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5UI2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UI2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UI2)

(-) Exons   (0, 0)

(no "Exon" information available for 5UI2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh.........hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhh.hhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......................hhhhh.........hhhhhhhhhhhhh.hhhhhhh.eeeeeeee......eehhhhhhhhhhhhh...eeeeeeeeeee.hhh.eeeeeeeeee...hhhhh.eeeeeeeee.....eeeeeeee..hhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ui2 A   2 PFTIDTARSIFPETLAADVVPATIARFKQLSAEDQLALIWFAYLEMGKTITIAAPGAANMQFAENTLQEIRQMTPLQQTQAMCDLANRTDTPICRTYASWSPNIKLGFWYELGRFMDQGLVAPIPEGYKLSANANAILVTIQGIDPGQQITVLRNCVVDMGFDTSKLGSYQRVAEPVVPPQEMSQRTKVQIEGVTNSTVLQYMDNLNANDFDNLISLFAEDGALQPPFQKPIVGKENTLRFFREECQNLKLIPERGVSEPTEDGYTQIKVTGKVQTPWFGGNVGMNIAWRFLLNPENKVFFVAIDLLASPKELLNL 317
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311      


Chain B from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh.........hhhhhhhhhhhh.hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhh.hhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......................hhhhh.........hhhhhhhhhhhhh.hhhhhhh.eeeeeeee......eehhhhhhhhhhhhh...eeeeeeeeeee.hhh.eeeeeeeeee...hhhhh.eeeeeeeee.....eeeeeeee..hhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ui2 B   2 PFTIDTARSIFPETLAADVVPATIARFKQLSAEDQLALIWFAYLEMGKTITIAAPGAANMQFAENTLQEIRQMTPLQQTQAMCDLANRTDTPICRTYASWSPNIKLGFWYELGRFMDQGLVAPIPEGYKLSANANAILVTIQGIDPGQQITVLRNCVVDMGFDTSKLGSYQRVAEPVVPPQEMSQRTKVQIEGVTNSTVLQYMDNLNANDFDNLISLFAEDGALQPPFQKPIVGKENTLRFFREECQNLKLIPERGVSEPTEDGYTQIKVTGKVQTPWFGGNVGMNIAWRFLLNPENKVFFVAIDLLASPKELL 315
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0 ; only for superseded entry 1M98: 2,4)

(no "SCOP Domain" information available for 5UI2, only for superseded entry 1M98 replaced by 5UI2)

(-) CATH Domains  (0, 0 ; only for superseded entry 1M98: 2,4)

(no "CATH Domain" information available for 5UI2, only for superseded entry 1M98 replaced by 5UI2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UI2)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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