1M8W | PR0079 - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO1 IN COMPLEX WITH NRE1-19 RNA

Authors :   X. Wang, J. Mclachlan, P. D. Zamore, T. M. T. Hall

Date :   26 Jul 02 (Deposition) - 25 Sep 02 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,C,E  (1x)
Biol. Unit 2: B,D,F  (1x)

Keywords :   Pumilio-Homology Domain, Puf Domain, Nanos Response Element, Rna Binding Protein/Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   X. Wang, J. Mclachlan, P. D. Zamore, T. M. T. Hall
Modular Recognition Of Rna By A Human Pumilio-Homology Domain
Cell(Cambridge, Mass. ) V. 110 501 2002
PubMed-ID: 12202039 | Reference-DOI: 10.1016/S0092-8674(02)00873-5
(for further references see the PDB file header)

*Molecule 1 - 5'-R(PUPUPGPUPAPUPAPU)-3'*
	Chains	:	C
	Engineered	:	YES
	Other Details	:	THIS SEQUENCE OCCURS NATURALLY IN DROSOPHILA MELANOGASTER
	Synthetic	:	YES

*Molecule 2 - 5'-R(PUPGPUPAPUPAPU)-3'**
	Chains	:	D
	Engineered	:	YES
	Other Details	:	THIS SEQUENCE OCCURS NATURALLY IN DROSOPHILA MELANOGASTER
	Synthetic	:	YES

*Molecule 3 - 5'-R(PUPUPGPUPCPCPAPG)-3'*
	Chains	:	E
	Engineered	:	YES
	Other Details	:	THIS SEQUENCE OCCURS NATURALLY IN DROSOPHILA MELANOGASTER
	Synthetic	:	YES

*Molecule 4 - 5'-R(PUPGPUPCPCPAPG)-3'**
	Chains	:	F
	Engineered	:	YES
	Other Details	:	THIS SEQUENCE OCCURS NATURALLY IN DROSOPHILA MELANOGASTER
	Synthetic	:	YES

Molecule 5 - PUMILIO 1
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PTYB3
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	PUMILIO-HOMOLOGY DOMAIN, RESIDUES 828-1176
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A		C		E
Biological Unit 2 (1x)	:		B		D		F

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1M8W)

(no "Site" information available for 1M8W)

(no "SS Bond" information available for 1M8W)

(no "Cis Peptide Bond" information available for 1M8W)

(no "SAP(SNP)/Variant" information available for 1M8W)

Asymmetric Unit (2, 18)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PUM_HD	PS50303	Pumilio homology domain (PUM-HD) profile.	PUM1_HUMAN	828-1168	2	A:828-1167 B:828-1168
2	PUM	PS50302	Pumilio RNA-binding repeat profile.	PUM1_HUMAN	848-883 884-919 920-955 956-991 992-1027 1028-1063 1064-1099 1103-1142	16	A:848-883 B:848-883 A:884-919 B:884-919 A:920-955 B:920-955 A:956-991 B:956-991 A:992-1027 B:992-1027 A:1028-1063 B:1028-1063 A:1064-1099 B:1064-1099 A:1103-1142 B:1103-1142

Biological Unit 1 (2, 9)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PUM_HD	PS50303	Pumilio homology domain (PUM-HD) profile.	PUM1_HUMAN	828-1168	1	A:828-1167 -
2	PUM	PS50302	Pumilio RNA-binding repeat profile.	PUM1_HUMAN	848-883 884-919 920-955 956-991 992-1027 1028-1063 1064-1099 1103-1142	8	A:848-883 - A:884-919 - A:920-955 - A:956-991 - A:992-1027 - A:1028-1063 - A:1064-1099 - A:1103-1142 -

Biological Unit 2 (2, 9)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PUM_HD	PS50303	Pumilio homology domain (PUM-HD) profile.	PUM1_HUMAN	828-1168	1	- B:828-1168
2	PUM	PS50302	Pumilio RNA-binding repeat profile.	PUM1_HUMAN	848-883 884-919 920-955 956-991 992-1027 1028-1063 1064-1099 1103-1142	8	- B:848-883 - B:884-919 - B:920-955 - B:956-991 - B:992-1027 - B:1028-1063 - B:1064-1099 - B:1103-1142

Asymmetric Unit (8, 16)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1f	ENST00000257075	1f	ENSE00001830352	chr1:31538545-31538463	83	PUM1_HUMAN	-	0	0	-	-
1.3c	ENST00000257075	3c	ENSE00002154901	chr1:31532424-31532051	374	PUM1_HUMAN	1-121	121	0	-	-
1.5a	ENST00000257075	5a	ENSE00001171922	chr1:31501711-31501643	69	PUM1_HUMAN	122-144	23	0	-	-
1.6	ENST00000257075	6	ENSE00001171914	chr1:31479949-31479841	109	PUM1_HUMAN	145-181	37	0	-	-
1.7	ENST00000257075	7	ENSE00001171904	chr1:31478878-31478700	179	PUM1_HUMAN	181-240	60	0	-	-
1.8b	ENST00000257075	8b	ENSE00000916523	chr1:31468067-31467901	167	PUM1_HUMAN	241-296	56	0	-	-
1.9b	ENST00000257075	9b	ENSE00000916522	chr1:31465507-31465237	271	PUM1_HUMAN	296-386	91	0	-	-
1.11b	ENST00000257075	11b	ENSE00000916520	chr1:31454252-31454159	94	PUM1_HUMAN	387-418	32	0	-	-
1.12c	ENST00000257075	12c	ENSE00001171885	chr1:31453010-31452909	102	PUM1_HUMAN	418-452	35	0	-	-
1.13b	ENST00000257075	13b	ENSE00000916518	chr1:31447649-31447498	152	PUM1_HUMAN	452-502	51	0	-	-
1.14a	ENST00000257075	14a	ENSE00001171865	chr1:31441339-31441201	139	PUM1_HUMAN	503-549	47	0	-	-
1.15b	ENST00000257075	15b	ENSE00000916516	chr1:31440157-31440014	144	PUM1_HUMAN	549-597	49	0	-	-
1.16d	ENST00000257075	16d	ENSE00000916515	chr1:31439125-31438829	297	PUM1_HUMAN	597-696	100	0	-	-
1.17b	ENST00000257075	17b	ENSE00000916514	chr1:31437757-31437521	237	PUM1_HUMAN	696-775	80	0	-	-
1.18a	ENST00000257075	18a	ENSE00000916513	chr1:31426828-31426561	268	PUM1_HUMAN	775-864	90	2	A:828-864 B:828-864	37 37
1.19	ENST00000257075	19	ENSE00000916512	chr1:31425210-31425081	130	PUM1_HUMAN	864-907	44	2	A:864-907 B:864-907	44 44
1.20a	ENST00000257075	20a	ENSE00001234157	chr1:31423108-31422980	129	PUM1_HUMAN	908-950	43	2	A:908-950 B:908-950	43 43
1.21b	ENST00000257075	21b	ENSE00000916510	chr1:31418330-31418193	138	PUM1_HUMAN	951-996	46	2	A:951-996 B:951-996	46 46
1.22a	ENST00000257075	22a	ENSE00000916508	chr1:31414970-31414845	126	PUM1_HUMAN	997-1038	42	2	A:997-1038 B:997-1038	42 42
1.23	ENST00000257075	23	ENSE00000916506	chr1:31414119-31413998	122	PUM1_HUMAN	1039-1079	41	2	A:1039-1079 B:1039-1079	41 41
1.24c	ENST00000257075	24c	ENSE00001620412	chr1:31409682-31409490	193	PUM1_HUMAN	1079-1143	65	2	A:1079-1143 B:1079-1143	65 65
1.25g	ENST00000257075	25g	ENSE00001065956	chr1:31406189-31404353	1837	PUM1_HUMAN	1144-1186	43	2	A:1144-1167 B:1144-1168	24 25

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:340
 aligned with PUM1_HUMAN | Q14671 from UniProtKB/Swiss-Prot  Length:1186

    Alignment length:340
                                   837       847       857       867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147      1157      1167
          PUM1_HUMAN    828 GRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKY 1167
               SCOP domains d1m8wa_ A: Pumilio 1                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1m8wA00 A:828-1167 Leucine-rich Repeat Variant                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh......hhhhhh.hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhee..eehhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh...hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) PUM_HD  PDB: A:828-1167 UniProt: 828-1168                                                                                                                                                                                                                                                                                                            PROSITE (1)
                PROSITE (2) --------------------PUM  PDB: A:848-883 UniProt: 848-883PUM  PDB: A:884-919 UniProt: 884-919PUM  PDB: A:920-955 UniProt: 920-955PUM  PDB: A:956-991 UniProt: 956-991PUM  PDB: A:992-1027                PUM  PDB: A:1028-1063               PUM  PDB: A:1064-1099               ---PUM  PDB: A:1103-1142 UniProt: 1103-1142------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.18a  PDB: A:828-864           -------------------------------------------Exon 1.20a  PDB: A:908-950 UniProt: 908-950Exon 1.21b  PDB: A:951-996 UniProt: 951-996   Exon 1.22a  PDB: A:997-1038               Exon 1.23  PDB: A:1039-1079              ----------------------------------------------------------------Exon 1.25g [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) ------------------------------------Exon 1.19  PDB: A:864-907 UniProt: 864-907  ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.24c  PDB: A:1079-1143 UniProt: 1079-1143                  ------------------------ Transcript 1 (2)
                1m8w A  828 GRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKY 1167
                                   837       847       857       867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147      1157      1167

Chain B from PDB  Type:PROTEIN  Length:341
 aligned with PUM1_HUMAN | Q14671 from UniProtKB/Swiss-Prot  Length:1186

    Alignment length:341
                                   837       847       857       867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147      1157      1167 
          PUM1_HUMAN    828 GRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 1168
               SCOP domains d1m8wb_ B: Pumilio 1                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1m8wB00 B:828-1168 Leucine-rich Repeat Variant                                                                                                                                                                                                                                                                                                        CATH domains
           Pfam domains (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB01 B:1110-1141         --------------------------- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB02 B:1110-1141         --------------------------- Pfam domains (2)
           Pfam domains (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB03 B:1110-1141         --------------------------- Pfam domains (3)
           Pfam domains (4) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB04 B:1110-1141         --------------------------- Pfam domains (4)
           Pfam domains (5) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB05 B:1110-1141         --------------------------- Pfam domains (5)
           Pfam domains (6) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB06 B:1110-1141         --------------------------- Pfam domains (6)
           Pfam domains (7) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB07 B:1110-1141         --------------------------- Pfam domains (7)
           Pfam domains (8) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB08 B:1110-1141         --------------------------- Pfam domains (8)
           Pfam domains (9) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB09 B:1110-1141         --------------------------- Pfam domains (9)
          Pfam domains (10) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB10 B:1110-1141         --------------------------- Pfam domains (10)
          Pfam domains (11) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB11 B:1110-1141         --------------------------- Pfam domains (11)
          Pfam domains (12) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB12 B:1110-1141         --------------------------- Pfam domains (12)
          Pfam domains (13) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB13 B:1110-1141         --------------------------- Pfam domains (13)
          Pfam domains (14) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB14 B:1110-1141         --------------------------- Pfam domains (14)
          Pfam domains (15) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB15 B:1110-1141         --------------------------- Pfam domains (15)
          Pfam domains (16) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PUF-1m8wB16 B:1110-1141         --------------------------- Pfam domains (16)
         Sec.struct. author ..hhhhhhhhh......hhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) PUM_HD  PDB: B:828-1168 UniProt: 828-1168                                                                                                                                                                                                                                                                                                             PROSITE (1)
                PROSITE (2) --------------------PUM  PDB: B:848-883 UniProt: 848-883PUM  PDB: B:884-919 UniProt: 884-919PUM  PDB: B:920-955 UniProt: 920-955PUM  PDB: B:956-991 UniProt: 956-991PUM  PDB: B:992-1027                PUM  PDB: B:1028-1063               PUM  PDB: B:1064-1099               ---PUM  PDB: B:1103-1142 UniProt: 1103-1142-------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.18a  PDB: B:828-864           -------------------------------------------Exon 1.20a  PDB: B:908-950 UniProt: 908-950Exon 1.21b  PDB: B:951-996 UniProt: 951-996   Exon 1.22a  PDB: B:997-1038               Exon 1.23  PDB: B:1039-1079              ----------------------------------------------------------------Exon 1.25g [INCOMPLETE]   Transcript 1 (1)
           Transcript 1 (2) ------------------------------------Exon 1.19  PDB: B:864-907 UniProt: 864-907  ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.24c  PDB: B:1079-1143 UniProt: 1079-1143                  ------------------------- Transcript 1 (2)
                1m8w B  828 GRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 1168
                                   837       847       857       867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147      1157      1167

Chain C from PDB  Type:RNA  Length:8
                                         
                1m8w C   12 UUGUAUAU   19

Chain D from PDB  Type:RNA  Length:7
                                        
                1m8w D   13 UGUAUAU   19

Chain E from PDB  Type:RNA  Length:8
                                         
                1m8w E    2 UUGUCCAG    9

Chain F from PDB  Type:RNA  Length:7
                                        
                1m8w F    3 UGUCCAG    9

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: alpha-alpha superhelix (690)

Superfamily: ARM repeat (317)

Family: Pumilio repeat (19)

Protein domain: Pumilio 1 (12)

Human (Homo sapiens) [TaxId: 9606] (12)

1a	d1m8wa_	A:
1b	d1m8wb_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Alpha Horseshoe (399)

Topology: Leucine-rich Repeat Variant (77)

Homologous Superfamily: Leucine-rich Repeat Variant (75)

[unclassified] (11)

1a	1m8wB00	B:828-1168
1b	1m8wA00	A:828-1167

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: TPR (230)

Family: PUF (24)

Homo sapiens (Human) (13)

1a	PUF-1m8wB01	B:1110-1141
1b	PUF-1m8wB02	B:1110-1141
1c	PUF-1m8wB03	B:1110-1141
1d	PUF-1m8wB04	B:1110-1141
1e	PUF-1m8wB05	B:1110-1141
1f	PUF-1m8wB06	B:1110-1141
1g	PUF-1m8wB07	B:1110-1141
1h	PUF-1m8wB08	B:1110-1141
1i	PUF-1m8wB09	B:1110-1141
1j	PUF-1m8wB10	B:1110-1141
1k	PUF-1m8wB11	B:1110-1141
1l	PUF-1m8wB12	B:1110-1141
1m	PUF-1m8wB13	B:1110-1141
1n	PUF-1m8wB14	B:1110-1141
1o	PUF-1m8wB15	B:1110-1141
1p	PUF-1m8wB16	B:1110-1141

Asymmetric Unit(hide GO term definitions)

Chain A,B (PUM1_HUMAN | Q14671)

molecular function
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0003730	mRNA 3'-UTR binding	Interacting selectively and non-covalently with the 3' untranslated region of an mRNA molecule.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0008344	adult locomotory behavior	Locomotory behavior in a fully developed and mature organism.
	GO:0030154	cell differentiation	The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
	GO:0061157	mRNA destabilization	Any process that decreases the stability of an mRNA molecule, making it more vulnerable to degradative processes. Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns.
	GO:1900246	positive regulation of RIG-I signaling pathway	Any process that activates or increases the frequency, rate or extent of RIG-I signaling pathway.
	GO:2000637	positive regulation of gene silencing by miRNA	Any process that activates or increases the frequency, rate or extent of gene silencing by miRNA.
	GO:0016441	posttranscriptional gene silencing	The inactivation of gene expression by a posttranscriptional mechanism.
	GO:0010608	posttranscriptional regulation of gene expression	Any process that modulates the frequency, rate or extent of gene expression after the production of an RNA transcript.
	GO:0051726	regulation of cell cycle	Any process that modulates the rate or extent of progression through the cell cycle.
	GO:0051983	regulation of chromosome segregation	Any process that modulates the frequency, rate or extent of chromosome segregation, the process in which genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets.
	GO:0060964	regulation of gene silencing by miRNA	Any process that modulates the rate, frequency, or extent of the downregulation of gene expression through the action of microRNAs (miRNAs), endogenous 21-24 nucleotide small RNAs processed from stem-loop RNA precursors (pre-miRNAs). Once incorporated into a RNA-induced silencing complex (RISC), miRNAs can downregulate gene expression by either of two posttranscriptional mechanisms: mRNA cleavage or translational repression.
	GO:0043488	regulation of mRNA stability	Any process that modulates the propensity of mRNA molecules to degradation. Includes processes that both stabilize and destabilize mRNAs.
	GO:0006417	regulation of translation	Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
	GO:0007283	spermatogenesis	The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
	GO:0048863	stem cell differentiation	The process in which a relatively unspecialized cell acquires specialized features of a stem cell. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells.
cellular component
	GO:0000932	P-body	A focus in the cytoplasm where mRNAs may become inactivated by decapping or some other mechanism. Protein and RNA localized to these foci are involved in mRNA degradation, nonsense-mediated mRNA decay (NMD), translational repression, and RNA-mediated gene silencing.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0010494	cytoplasmic stress granule	A dense aggregation in the cytosol composed of proteins and RNAs that appear when the cell is under stress.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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	1m8w
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	PUM1_HUMAN \| Q14671
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	PUM1_HUMAN \| Q14671
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UniProtKB/Swiss-Prot
	PUM1_HUMAN \| Q14671	:	1ib2 1m8x 1m8y 1m8z 2yjy 3bsb 3bsx 3q0l 3q0m 3q0n 3q0o 3q0p

1ib2	CRYSTAL STRUCTURE OF A PUMILIO-HOMOLOGY DOMAIN
1ib3	CRYSTAL STRUCTURE OF A PUMILIO-HOMOLOGY DOMAIN
1m8x	CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO1 IN COMPLEX WITH NRE1-14 RNA
1m8y	CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO1 IN COMPLEX WITH NRE2-10 RNA

Description

Compounds

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Ligands, Modified Residues, Ions (0, 0)

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PROSITE Motifs (2, 18)

Exons (8, 16)

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SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (1, 16)

Gene Ontology (21, 21)

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Related Entries Specified in the PDB File